Wall clock time and date at job start Tue Mar 31 2020 07:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.27566 * 126.41711 * 2 1 4 4 N 1.39154 * 113.16096 * 179.97438 * 3 2 1 5 5 C 1.39686 * 124.43681 * 179.97438 * 4 3 2 6 6 C 1.39385 * 120.86500 * 124.69839 * 5 4 3 7 7 C 1.37961 * 119.09032 * 179.72735 * 6 5 4 8 8 N 1.31971 * 120.85672 * 0.55860 * 7 6 5 9 9 C 1.31953 * 121.90957 * 359.71073 * 8 7 6 10 10 C 1.38079 * 120.82116 * 0.02562 * 9 8 7 11 11 Cl 1.73597 * 120.47370 * 179.97438 * 10 9 8 12 12 C 1.35308 * 111.16161 * 0.08869 * 4 3 2 13 13 O 1.21296 * 127.67524 * 179.91119 * 12 4 3 14 14 C 1.51445 * 126.41115 * 179.97438 * 2 1 3 15 15 H 1.08998 * 110.60893 * 61.32807 * 14 2 1 16 16 C 1.53000 * 110.60716 * 298.51181 * 14 2 1 17 17 C 1.50703 * 109.46912 * 177.15490 * 16 14 2 18 18 H 1.07996 * 119.99751 * 0.02562 * 17 16 14 19 19 C 1.37877 * 120.00001 * 180.02562 * 17 16 14 20 20 N 1.31517 * 120.00094 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99955 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47171 * 89.99544 * 21 19 17 23 23 H 1.48500 * 109.46632 * 209.99795 * 21 19 17 24 24 H 1.48494 * 109.47053 * 329.99231 * 21 19 17 25 25 H 1.09000 * 109.46581 * 270.00754 * 1 2 3 26 26 H 1.08997 * 109.46654 * 30.00086 * 1 2 3 27 27 H 1.08993 * 109.46952 * 150.00354 * 1 2 3 28 28 H 1.08001 * 120.45693 * 359.97438 * 6 5 4 29 29 H 1.08000 * 119.57109 * 180.26877 * 7 6 5 30 30 H 1.08002 * 119.58788 * 180.02562 * 9 8 7 31 31 H 1.09002 * 109.47398 * 297.15568 * 16 14 2 32 32 H 1.09001 * 109.47194 * 57.15748 * 16 14 2 33 33 H 0.97000 * 120.00333 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2644 1.0265 0.0000 4 7 3.6189 0.7075 0.0006 5 6 4.6519 1.6477 0.0002 6 6 5.6389 1.6260 0.9841 7 6 6.6455 2.5686 0.9453 8 7 6.6752 3.4887 -0.0003 9 6 5.7570 3.5466 -0.9462 10 6 4.7192 2.6364 -0.9813 11 17 3.5157 2.7213 -2.2295 12 6 3.8050 -0.6328 -0.0010 13 8 4.8578 -1.2350 -0.0024 14 6 2.4060 -1.2188 0.0005 15 1 2.2398 -1.8185 -0.8943 16 6 2.1755 -2.0574 1.2593 17 6 3.0303 -3.2971 1.2005 18 1 3.6738 -3.4694 0.3505 19 6 2.9907 -4.2114 2.2318 20 7 2.2074 -4.0014 3.2671 21 14 4.0508 -5.7478 2.1591 22 1 5.3679 -5.4705 2.7863 23 1 3.3760 -6.8497 2.8911 24 1 4.2508 -6.1446 0.7422 25 1 -0.3632 0.0001 1.0277 26 1 -0.3632 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5137 28 1 5.6183 0.8790 1.7639 29 1 7.4167 2.5563 1.7013 30 1 5.8179 4.3154 -1.7022 31 1 2.4434 -1.4728 2.1395 32 1 1.1252 -2.3427 1.3185 33 1 2.1792 -4.6447 3.9925 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601942678.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:24 Heat of formation + Delta-G solvation = 50.150265 kcal Electronic energy + Delta-G solvation = -20828.304153 eV Core-core repulsion = 17495.514025 eV Total energy + Delta-G solvation = -3332.790128 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.34870 -39.93704 -37.10013 -36.63925 -34.87482 -33.17216 -31.33203 -31.04308 -30.53664 -27.96346 -26.24053 -23.95041 -23.50908 -22.28551 -20.29367 -19.66688 -17.96076 -16.91268 -16.49218 -16.28324 -15.50439 -15.27617 -14.78164 -14.46779 -14.24803 -14.16373 -13.89293 -13.38468 -13.18631 -12.55907 -12.33799 -12.32943 -12.06022 -11.70014 -11.60249 -11.49912 -11.22588 -10.99223 -10.77009 -10.40150 -10.07685 -9.85478 -9.68989 -9.48667 -9.12193 -8.95578 -8.47629 -8.32885 -6.12064 -4.14350 0.75931 0.88144 1.94420 1.97652 2.45965 2.93437 3.29863 3.35833 3.40808 3.50539 4.24560 4.28394 4.36921 4.49041 4.67596 4.74770 4.93190 5.22913 5.27378 5.34911 5.50916 5.66380 5.71170 5.76647 5.86162 5.99718 6.16041 6.27651 6.42990 6.71597 7.29414 7.32362 7.66562 7.85403 7.87924 8.16083 8.22879 8.90971 9.51087 10.98945 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.018983 B = 0.005158 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.655634 B = 5427.384608 C = 6369.082598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.115 3.885 3 N -0.246 5.246 4 N -0.444 5.444 5 C 0.231 3.769 6 C -0.157 4.157 7 C 0.117 3.883 8 N -0.477 5.477 9 C 0.121 3.879 10 C -0.093 4.093 11 Cl -0.040 7.040 12 C 0.516 3.484 13 O -0.465 6.465 14 C -0.127 4.127 15 H 0.128 0.872 16 C 0.055 3.945 17 C -0.520 4.520 18 H 0.065 0.935 19 C 0.061 3.939 20 N -0.896 5.896 21 Si 0.896 3.104 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.272 1.272 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.149 0.851 29 H 0.170 0.830 30 H 0.168 0.832 31 H 0.020 0.980 32 H 0.042 0.958 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.314 13.435 -7.335 15.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.077 4.077 3 N -0.051 5.051 4 N -0.258 5.258 5 C 0.130 3.870 6 C -0.180 4.180 7 C -0.039 4.039 8 N -0.187 5.187 9 C -0.037 4.037 10 C -0.125 4.125 11 Cl -0.012 7.012 12 C 0.305 3.695 13 O -0.332 6.332 14 C -0.151 4.151 15 H 0.146 0.854 16 C 0.016 3.984 17 C -0.558 4.558 18 H 0.083 0.917 19 C -0.140 4.140 20 N -0.535 5.535 21 Si 0.724 3.276 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.197 1.197 25 H 0.110 0.890 26 H 0.097 0.903 27 H 0.108 0.892 28 H 0.167 0.833 29 H 0.187 0.813 30 H 0.185 0.815 31 H 0.039 0.961 32 H 0.060 0.940 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.005 14.622 -7.283 16.367 hybrid contribution -0.087 -2.282 0.036 2.284 sum 0.918 12.341 -7.247 14.341 Atomic orbital electron populations 1.20347 0.84673 1.03895 1.04361 1.25636 0.97559 0.91699 0.92836 1.74843 0.86982 1.26249 1.17023 1.47180 1.02421 1.05242 1.70968 1.17446 0.88340 0.88963 0.92250 1.22359 0.95821 1.01476 0.98347 1.22746 0.96205 0.89201 0.95779 1.67820 1.24900 1.23080 1.02894 1.22682 0.88131 0.96308 0.96603 1.22257 0.95621 1.00815 0.93792 1.98373 1.54883 1.97759 1.50151 1.21757 0.92578 0.80696 0.74427 1.90746 1.31393 1.64949 1.46066 1.22110 0.89617 0.96350 1.07016 0.85444 1.18938 0.98958 0.93251 0.87211 1.21158 1.24446 1.04386 1.05827 0.91705 1.24945 0.95460 0.98429 0.95179 1.69944 1.38409 1.36500 1.08628 0.86515 0.80454 0.82342 0.78304 1.20613 1.21198 1.19707 0.88953 0.90269 0.89212 0.83292 0.81321 0.81479 0.96130 0.93965 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.49 36.01 0.38 -0.46 16 2 C 0.12 1.84 6.93 -78.72 -0.55 1.30 16 3 N -0.25 -4.21 11.01 35.53 0.39 -3.82 16 4 N -0.44 -8.27 3.27 -9.22 -0.03 -8.30 16 5 C 0.23 3.90 5.99 -83.39 -0.50 3.40 16 6 C -0.16 -2.41 9.65 -39.26 -0.38 -2.78 16 7 C 0.12 1.49 11.17 -17.59 -0.20 1.29 16 8 N -0.48 -6.29 10.36 -13.30 -0.14 -6.43 16 9 C 0.12 1.52 10.98 -17.56 -0.19 1.33 16 10 C -0.09 -1.36 6.36 -39.18 -0.25 -1.61 16 11 Cl -0.04 -0.55 27.73 -51.86 -1.44 -1.99 16 12 C 0.52 10.99 7.40 -10.27 -0.08 10.91 16 13 O -0.46 -11.25 16.67 5.54 0.09 -11.16 16 14 C -0.13 -2.49 2.98 -92.08 -0.27 -2.76 16 15 H 0.13 2.34 8.14 -51.93 -0.42 1.92 16 16 C 0.05 1.29 4.50 -27.88 -0.13 1.17 16 17 C -0.52 -14.14 8.39 -34.44 -0.29 -14.43 16 18 H 0.06 1.80 7.24 -52.49 -0.38 1.42 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.90 -25.70 13.29 55.43 0.74 -24.96 16 21 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 25 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.15 2.35 8.06 -52.49 -0.42 1.92 16 29 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.17 1.58 8.06 -52.49 -0.42 1.16 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 312.05 15.07 4.70 4.70 Total: -1.00 -32.23 312.05 -6.57 -38.80 By element: Atomic # 1 Polarization: 0.87 SS G_CDS: -3.32 Total: -2.45 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -2.55 Total: -1.03 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 0.96 Total: -43.51 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.44 Total: -1.99 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.23 -6.57 -38.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601942678.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.953 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds