Wall clock time and date at job start Tue Mar 31 2020 07:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.27566 * 126.41711 * 2 1 4 4 N 1.39154 * 113.16096 * 179.97438 * 3 2 1 5 5 C 1.39686 * 124.43681 * 179.97438 * 4 3 2 6 6 C 1.39385 * 120.86500 * 124.69839 * 5 4 3 7 7 C 1.37961 * 119.09032 * 179.72735 * 6 5 4 8 8 N 1.31971 * 120.85672 * 0.55860 * 7 6 5 9 9 C 1.31953 * 121.90957 * 359.71073 * 8 7 6 10 10 C 1.38079 * 120.82116 * 0.02562 * 9 8 7 11 11 Cl 1.73597 * 120.47370 * 179.97438 * 10 9 8 12 12 C 1.35308 * 111.16161 * 0.08869 * 4 3 2 13 13 O 1.21296 * 127.67524 * 179.91119 * 12 4 3 14 14 C 1.51445 * 126.41115 * 179.97438 * 2 1 3 15 15 H 1.08998 * 110.60893 * 61.32807 * 14 2 1 16 16 C 1.53000 * 110.60716 * 298.51181 * 14 2 1 17 17 C 1.50703 * 109.46912 * 177.15490 * 16 14 2 18 18 H 1.07996 * 119.99751 * 0.02562 * 17 16 14 19 19 C 1.37877 * 120.00001 * 180.02562 * 17 16 14 20 20 N 1.31517 * 120.00094 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99955 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47171 * 89.99544 * 21 19 17 23 23 H 1.48500 * 109.46632 * 209.99795 * 21 19 17 24 24 H 1.48494 * 109.47053 * 329.99231 * 21 19 17 25 25 H 1.09000 * 109.46581 * 270.00754 * 1 2 3 26 26 H 1.08997 * 109.46654 * 30.00086 * 1 2 3 27 27 H 1.08993 * 109.46952 * 150.00354 * 1 2 3 28 28 H 1.08001 * 120.45693 * 359.97438 * 6 5 4 29 29 H 1.08000 * 119.57109 * 180.26877 * 7 6 5 30 30 H 1.08002 * 119.58788 * 180.02562 * 9 8 7 31 31 H 1.09002 * 109.47398 * 297.15568 * 16 14 2 32 32 H 1.09001 * 109.47194 * 57.15748 * 16 14 2 33 33 H 0.97000 * 120.00333 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2644 1.0265 0.0000 4 7 3.6189 0.7075 0.0006 5 6 4.6519 1.6477 0.0002 6 6 5.6389 1.6260 0.9841 7 6 6.6455 2.5686 0.9453 8 7 6.6752 3.4887 -0.0003 9 6 5.7570 3.5466 -0.9462 10 6 4.7192 2.6364 -0.9813 11 17 3.5157 2.7213 -2.2295 12 6 3.8050 -0.6328 -0.0010 13 8 4.8578 -1.2350 -0.0024 14 6 2.4060 -1.2188 0.0005 15 1 2.2398 -1.8185 -0.8943 16 6 2.1755 -2.0574 1.2593 17 6 3.0303 -3.2971 1.2005 18 1 3.6738 -3.4694 0.3505 19 6 2.9907 -4.2114 2.2318 20 7 2.2074 -4.0014 3.2671 21 14 4.0508 -5.7478 2.1591 22 1 5.3679 -5.4705 2.7863 23 1 3.3760 -6.8497 2.8911 24 1 4.2508 -6.1446 0.7422 25 1 -0.3632 0.0001 1.0277 26 1 -0.3632 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5137 28 1 5.6183 0.8790 1.7639 29 1 7.4167 2.5563 1.7013 30 1 5.8179 4.3154 -1.7022 31 1 2.4434 -1.4728 2.1395 32 1 1.1252 -2.3427 1.3185 33 1 2.1792 -4.6447 3.9925 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601942678.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:23 Heat of formation + Delta-G solvation = 29.992334 kcal Electronic energy + Delta-G solvation = -20829.178266 eV Core-core repulsion = 17495.514025 eV Total energy + Delta-G solvation = -3333.664242 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.76566 -41.09723 -38.71307 -37.73206 -36.33166 -35.03492 -32.62795 -32.26463 -32.06132 -29.11539 -28.05954 -25.39662 -24.69049 -23.87216 -21.83401 -20.99888 -19.39962 -18.41545 -18.10361 -17.51776 -17.02148 -16.63484 -16.55698 -15.91571 -15.58838 -15.38989 -15.16777 -14.69682 -14.45204 -14.26209 -13.70814 -13.50986 -13.35431 -13.26023 -13.12291 -12.88689 -12.76438 -12.63639 -12.33793 -12.15000 -11.62472 -11.56908 -11.16753 -10.92954 -10.68708 -10.51454 -10.18326 -9.70973 -8.24994 -6.32663 -0.38683 -0.23099 0.55317 0.80311 1.13926 1.36416 1.38548 1.43734 1.48992 2.37876 2.40306 2.91019 3.10351 3.13488 3.29052 3.43731 3.63447 3.82488 3.87813 4.21268 4.24328 4.44936 4.54508 4.66915 4.74101 4.86249 4.98946 5.08967 5.29431 5.29464 5.34722 5.49632 5.72446 6.10258 6.46674 6.60348 6.66257 6.78384 7.35585 8.85925 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.018983 B = 0.005158 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.655634 B = 5427.384608 C = 6369.082598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.132 3.868 3 N -0.254 5.254 4 N -0.442 5.442 5 C 0.197 3.803 6 C -0.175 4.175 7 C 0.131 3.869 8 N -0.479 5.479 9 C 0.133 3.867 10 C -0.100 4.100 11 Cl -0.034 7.034 12 C 0.506 3.494 13 O -0.509 6.509 14 C -0.130 4.130 15 H 0.140 0.860 16 C 0.067 3.933 17 C -0.533 4.533 18 H 0.052 0.948 19 C 0.014 3.986 20 N -0.924 5.924 21 Si 0.952 3.048 22 H -0.284 1.284 23 H -0.274 1.274 24 H -0.268 1.268 25 H 0.100 0.900 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.134 0.866 29 H 0.204 0.796 30 H 0.202 0.798 31 H -0.012 1.012 32 H 0.046 0.954 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.569 14.565 -8.205 16.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.060 4.060 3 N -0.058 5.058 4 N -0.255 5.255 5 C 0.097 3.903 6 C -0.197 4.197 7 C -0.025 4.025 8 N -0.189 5.189 9 C -0.025 4.025 10 C -0.131 4.131 11 Cl -0.005 7.005 12 C 0.295 3.705 13 O -0.380 6.380 14 C -0.153 4.153 15 H 0.157 0.843 16 C 0.029 3.971 17 C -0.571 4.571 18 H 0.071 0.929 19 C -0.185 4.185 20 N -0.564 5.564 21 Si 0.777 3.223 22 H -0.210 1.210 23 H -0.199 1.199 24 H -0.192 1.192 25 H 0.118 0.882 26 H 0.124 0.876 27 H 0.127 0.873 28 H 0.152 0.848 29 H 0.220 0.780 30 H 0.219 0.781 31 H 0.007 0.993 32 H 0.064 0.936 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.727 15.793 -8.162 17.792 hybrid contribution 0.000 -2.547 0.296 2.564 sum 0.727 13.246 -7.866 15.423 Atomic orbital electron populations 1.20630 0.80963 1.06195 1.05469 1.26232 0.99234 0.89243 0.91310 1.74897 0.86327 1.26318 1.18305 1.47146 1.03402 1.04728 1.70178 1.17861 0.88653 0.89856 0.93978 1.22415 0.96759 1.02257 0.98312 1.23224 0.95694 0.87666 0.95942 1.67963 1.24907 1.22944 1.03054 1.23233 0.86713 0.95918 0.96618 1.22362 0.96498 1.00659 0.93617 1.98369 1.54750 1.97717 1.49644 1.21996 0.92557 0.81861 0.74059 1.90696 1.32744 1.66137 1.48389 1.21992 0.90214 0.97625 1.05496 0.84302 1.18640 0.98312 0.92236 0.87896 1.21443 1.24538 1.05722 1.05432 0.92929 1.25678 0.96625 1.01222 0.94986 1.70022 1.39616 1.37555 1.09181 0.85644 0.78687 0.79432 0.78504 1.20985 1.19867 1.19198 0.88166 0.87552 0.87348 0.84804 0.77971 0.78090 0.99330 0.93595 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.49 10.49 71.24 0.75 -0.74 16 2 C 0.13 4.09 6.93 46.83 0.32 4.41 16 3 N -0.25 -8.53 11.01 -40.84 -0.45 -8.98 16 4 N -0.44 -16.68 3.27 -301.15 -0.99 -17.67 16 5 C 0.20 6.67 5.99 38.47 0.23 6.90 16 6 C -0.17 -5.41 9.65 22.48 0.22 -5.19 16 7 C 0.13 3.14 11.17 84.61 0.95 4.09 16 8 N -0.48 -11.55 10.36 -196.01 -2.03 -13.58 16 9 C 0.13 3.05 10.98 84.64 0.93 3.98 16 10 C -0.10 -2.81 6.36 22.53 0.14 -2.67 16 11 Cl -0.03 -0.87 27.73 -2.72 -0.08 -0.95 16 12 C 0.51 22.17 7.40 87.88 0.65 22.82 16 13 O -0.51 -25.75 16.67 -3.08 -0.05 -25.80 16 14 C -0.13 -5.12 2.98 -11.74 -0.03 -5.15 16 15 H 0.14 5.11 8.14 -2.39 -0.02 5.09 16 16 C 0.07 3.26 4.50 29.85 0.13 3.40 16 17 C -0.53 -29.61 8.39 25.60 0.21 -29.40 16 18 H 0.05 3.00 7.24 -2.91 -0.02 2.98 16 19 C 0.01 0.77 5.46 84.65 0.46 1.23 16 20 N -0.92 -53.56 13.29 21.45 0.28 -53.27 16 21 Si 0.95 44.76 29.54 68.60 2.03 46.79 16 22 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 23 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 25 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 29 H 0.20 3.31 8.06 -2.91 -0.02 3.29 16 30 H 0.20 3.12 8.06 -2.91 -0.02 3.09 16 31 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 32 H 0.05 2.16 8.14 -2.39 -0.02 2.15 16 33 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -70.95 312.05 4.82 -66.13 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: 1.14 Total: 3.65 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 4.96 Total: 3.68 kcal Atomic # 7 Polarization: -90.32 SS G_CDS: -3.18 Total: -93.50 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.05 Total: -25.80 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.95 kcal Total: -70.95 4.82 -66.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601942678.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.117 kcal (2) G-P(sol) polarization free energy of solvation -70.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds