Wall clock time and date at job start Tue Mar 31 2020 06:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00333 * 2 1 4 4 H 1.48501 * 109.47114 * 239.99911 * 3 2 1 5 5 H 1.48499 * 109.46911 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46771 * 120.00170 * 3 2 1 7 7 C 1.37879 * 119.99518 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99702 * 171.02915 * 7 2 1 9 9 C 1.50693 * 120.00439 * 351.03055 * 7 2 1 10 10 C 1.53002 * 115.55196 * 84.69620 * 9 7 2 11 11 N 1.46494 * 109.46778 * 35.63872 * 10 9 7 12 12 C 1.31086 * 120.00459 * 115.01028 * 11 10 9 13 13 N 1.35585 * 125.81508 * 179.71357 * 12 11 10 14 14 H 0.96995 * 122.97246 * 359.97438 * 13 12 11 15 15 N 1.37814 * 114.04674 * 179.79898 * 13 12 11 16 16 C 1.27561 * 116.55090 * 0.51021 * 15 13 12 17 17 C 1.50703 * 124.81079 * 179.74899 * 16 15 13 18 18 F 1.39903 * 109.46919 * 4.97084 * 17 16 15 19 19 F 1.39895 * 109.47194 * 124.97007 * 17 16 15 20 20 F 1.39897 * 109.46799 * 244.97272 * 17 16 15 21 21 S 1.75886 * 110.38273 * 359.71929 * 16 15 13 22 22 C 1.53005 * 117.51967 * 230.40577 * 9 7 2 23 23 C 1.53003 * 60.00084 * 107.47890 * 22 9 7 24 24 H 0.97007 * 119.99636 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46990 * 155.63358 * 10 9 7 26 26 H 1.08996 * 109.47342 * 275.63225 * 10 9 7 27 27 H 1.09003 * 117.49700 * 214.96816 * 22 9 7 28 28 H 1.08999 * 117.49722 * 359.97438 * 22 9 7 29 29 H 1.08999 * 117.49321 * 252.51289 * 23 22 9 30 30 H 1.08992 * 117.51907 * 107.48391 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0746 -1.1998 -0.1464 9 6 1.2648 -2.4913 0.2023 10 6 0.6454 -3.1017 -1.0565 11 7 1.5209 -2.8484 -2.2035 12 6 2.1013 -3.8499 -2.8189 13 7 2.9259 -3.7519 -3.8906 14 1 3.1596 -2.9048 -4.3012 15 7 3.4056 -4.9622 -4.3426 16 6 3.0134 -6.0012 -3.7150 17 6 3.4163 -7.4136 -4.0529 18 9 4.3668 -7.3945 -5.0792 19 9 3.9646 -8.0256 -2.9207 20 9 2.2913 -8.1316 -4.4725 21 16 1.9365 -5.5520 -2.3990 22 6 1.8033 -3.4538 1.2628 23 6 0.5113 -2.6761 1.5211 24 1 -0.4850 0.8401 0.0004 25 1 0.5283 -4.1767 -0.9193 26 1 -0.3300 -2.6501 -1.2372 27 1 1.7165 -4.5220 1.0635 28 1 2.6932 -3.1491 1.8136 29 1 0.5511 -1.8596 2.2421 30 1 -0.4256 -3.2321 1.4918 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619527827.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:22 Heat of formation + Delta-G solvation = -39.650221 kcal Electronic energy + Delta-G solvation = -20858.385118 eV Core-core repulsion = 16981.887915 eV Total energy + Delta-G solvation = -3876.497204 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.050 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.45787 -47.97475 -47.95148 -39.94948 -37.12801 -34.79990 -32.01714 -31.87590 -27.78123 -26.22556 -25.26375 -23.35597 -21.47562 -21.20246 -19.77276 -19.15051 -18.85794 -18.09516 -17.70805 -16.84912 -16.09752 -15.40862 -14.81620 -14.73797 -14.64207 -14.41067 -14.35701 -14.07419 -14.07038 -13.79115 -13.25115 -13.05780 -12.82519 -12.40406 -11.84023 -11.40780 -11.00703 -10.88342 -10.82752 -10.53995 -10.23975 -9.96897 -9.61333 -9.19191 -8.70592 -8.47546 -8.19061 -7.51541 -6.05432 -4.06837 0.75042 0.84581 1.38230 1.67378 2.33379 2.72999 3.30020 3.34643 3.37443 3.39897 3.79749 3.97903 4.40243 4.61399 5.17734 5.23813 5.35726 5.89419 6.07693 6.28411 6.44711 6.63717 6.78965 6.89777 6.96269 7.02748 7.26052 7.39309 7.87245 8.07299 8.41152 8.89727 9.56936 11.05092 Molecular weight = 293.05amu Principal moments of inertia in cm(-1) A = 0.027694 B = 0.004298 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.790919 B = 6513.550370 C = 6996.176911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.076 3.924 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.475 4.475 8 H 0.056 0.944 9 C 0.045 3.955 10 C 0.107 3.893 11 N -0.438 5.438 12 C 0.292 3.708 13 N -0.502 5.502 14 H 0.454 0.546 15 N -0.146 5.146 16 C -0.063 4.063 17 C 0.569 3.431 18 F -0.158 7.158 19 F -0.157 7.157 20 F -0.158 7.158 21 S 0.025 5.975 22 C -0.212 4.212 23 C -0.153 4.153 24 H 0.260 0.740 25 H 0.022 0.978 26 H 0.097 0.903 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.048 -13.546 -7.541 16.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.127 4.127 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.513 4.513 8 H 0.074 0.926 9 C 0.043 3.957 10 C -0.023 4.023 11 N -0.163 5.163 12 C -0.098 4.098 13 N -0.243 5.243 14 H 0.303 0.697 15 N 0.036 4.964 16 C -0.365 4.365 17 C 0.511 3.489 18 F -0.139 7.139 19 F -0.138 7.138 20 F -0.140 7.140 21 S 0.250 5.750 22 C -0.250 4.250 23 C -0.191 4.191 24 H 0.069 0.931 25 H 0.040 0.960 26 H 0.115 0.885 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.636 -12.774 -7.332 15.171 hybrid contribution 0.702 1.032 -0.324 1.289 sum 4.339 -11.742 -7.655 14.673 Atomic orbital electron populations 1.69981 1.05867 1.26542 1.49181 1.24876 0.94708 0.98703 0.94433 0.86721 0.79711 0.83319 0.78577 1.20309 1.21346 1.20364 1.20094 0.92968 0.88326 1.49942 0.92606 1.18827 0.97800 0.94433 0.84600 1.21981 0.95700 0.95156 0.89459 1.71756 1.11547 1.22046 1.10957 1.25346 0.98866 0.91478 0.94127 1.45429 1.44857 1.05239 1.28728 0.69712 1.73200 1.13384 0.91236 1.18608 1.27005 1.08584 0.96586 1.04298 1.16518 0.75219 0.82166 0.75040 1.93269 1.64675 1.96564 1.59387 1.93285 1.85698 1.83855 1.50970 1.93278 1.51594 1.79041 1.90058 1.86348 1.51830 1.03770 1.33041 1.23141 0.98282 0.95573 1.07968 1.22560 0.92690 1.01124 1.02763 0.93067 0.95964 0.88468 0.91597 0.90229 0.89753 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.30 13.03 55.43 0.72 -23.58 16 2 C 0.08 2.04 5.38 -17.82 -0.10 1.95 16 3 Si 0.89 21.05 29.55 -169.99 -5.02 16.03 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.48 -12.67 8.05 -34.44 -0.28 -12.95 16 8 H 0.06 1.53 7.83 -52.48 -0.41 1.12 16 9 C 0.04 1.06 1.77 -155.66 -0.28 0.79 16 10 C 0.11 2.33 6.46 -4.04 -0.03 2.31 16 11 N -0.44 -9.25 9.88 -61.38 -0.61 -9.85 16 12 C 0.29 5.14 8.43 -89.39 -0.75 4.39 16 13 N -0.50 -7.51 6.93 30.42 0.21 -7.30 16 14 H 0.45 5.88 8.96 -184.29 -1.65 4.23 16 15 N -0.15 -2.04 11.65 32.97 0.38 -1.66 16 16 C -0.06 -0.85 6.92 -14.05 -0.10 -0.94 16 17 C 0.57 6.55 3.55 36.01 0.13 6.68 16 18 F -0.16 -1.78 17.09 2.25 0.04 -1.74 16 19 F -0.16 -1.78 17.30 2.25 0.04 -1.74 16 20 F -0.16 -1.74 17.30 2.25 0.04 -1.71 16 21 S 0.03 0.38 21.46 -107.50 -2.31 -1.92 16 22 C -0.21 -4.50 9.88 -26.73 -0.26 -4.76 16 23 C -0.15 -3.44 9.56 -26.73 -0.26 -3.70 16 24 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 25 H 0.02 0.44 6.03 -51.93 -0.31 0.12 16 26 H 0.10 2.27 8.14 -51.93 -0.42 1.85 16 27 H 0.07 1.26 8.06 -51.93 -0.42 0.84 16 28 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 29 H 0.08 2.02 8.14 -51.93 -0.42 1.59 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 297.26 15.07 4.48 4.48 Total: -1.00 -27.81 297.26 -7.56 -35.37 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -3.62 Total: -0.13 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -1.92 Total: -6.24 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.71 Total: -42.39 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.12 Total: -5.19 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 0.38 SS G_CDS: -2.31 Total: -1.92 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.81 -7.56 -35.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619527827.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.283 kcal (2) G-P(sol) polarization free energy of solvation -27.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds