Wall clock time and date at job start Tue Mar 31 2020 06:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00333 * 2 1 4 4 H 1.48501 * 109.47114 * 239.99911 * 3 2 1 5 5 H 1.48499 * 109.46911 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46771 * 120.00170 * 3 2 1 7 7 C 1.37879 * 119.99518 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99702 * 171.02915 * 7 2 1 9 9 C 1.50693 * 120.00439 * 351.03055 * 7 2 1 10 10 C 1.53002 * 115.55196 * 84.69620 * 9 7 2 11 11 N 1.46494 * 109.46778 * 35.63872 * 10 9 7 12 12 C 1.31086 * 120.00459 * 115.01028 * 11 10 9 13 13 N 1.35585 * 125.81508 * 179.71357 * 12 11 10 14 14 H 0.96995 * 122.97246 * 359.97438 * 13 12 11 15 15 N 1.37814 * 114.04674 * 179.79898 * 13 12 11 16 16 C 1.27561 * 116.55090 * 0.51021 * 15 13 12 17 17 C 1.50703 * 124.81079 * 179.74899 * 16 15 13 18 18 F 1.39903 * 109.46919 * 4.97084 * 17 16 15 19 19 F 1.39895 * 109.47194 * 124.97007 * 17 16 15 20 20 F 1.39897 * 109.46799 * 244.97272 * 17 16 15 21 21 S 1.75886 * 110.38273 * 359.71929 * 16 15 13 22 22 C 1.53005 * 117.51967 * 230.40577 * 9 7 2 23 23 C 1.53003 * 60.00084 * 107.47890 * 22 9 7 24 24 H 0.97007 * 119.99636 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46990 * 155.63358 * 10 9 7 26 26 H 1.08996 * 109.47342 * 275.63225 * 10 9 7 27 27 H 1.09003 * 117.49700 * 214.96816 * 22 9 7 28 28 H 1.08999 * 117.49722 * 359.97438 * 22 9 7 29 29 H 1.08999 * 117.49321 * 252.51289 * 23 22 9 30 30 H 1.08992 * 117.51907 * 107.48391 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0746 -1.1998 -0.1464 9 6 1.2648 -2.4913 0.2023 10 6 0.6454 -3.1017 -1.0565 11 7 1.5209 -2.8484 -2.2035 12 6 2.1013 -3.8499 -2.8189 13 7 2.9259 -3.7519 -3.8906 14 1 3.1596 -2.9048 -4.3012 15 7 3.4056 -4.9622 -4.3426 16 6 3.0134 -6.0012 -3.7150 17 6 3.4163 -7.4136 -4.0529 18 9 4.3668 -7.3945 -5.0792 19 9 3.9646 -8.0256 -2.9207 20 9 2.2913 -8.1316 -4.4725 21 16 1.9365 -5.5520 -2.3990 22 6 1.8033 -3.4538 1.2628 23 6 0.5113 -2.6761 1.5211 24 1 -0.4850 0.8401 0.0004 25 1 0.5283 -4.1767 -0.9193 26 1 -0.3300 -2.6501 -1.2372 27 1 1.7165 -4.5220 1.0635 28 1 2.6932 -3.1491 1.8136 29 1 0.5511 -1.8596 2.2421 30 1 -0.4256 -3.2321 1.4918 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619527827.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:21 Heat of formation + Delta-G solvation = -56.395936 kcal Electronic energy + Delta-G solvation = -20859.111267 eV Core-core repulsion = 16981.887915 eV Total energy + Delta-G solvation = -3877.223352 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.050 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -51.38806 -48.89596 -48.87563 -41.19061 -38.83108 -36.26271 -33.95865 -33.23586 -29.04607 -27.76670 -27.03779 -24.72459 -22.94813 -22.59360 -21.22569 -20.67515 -19.78773 -19.18755 -18.83570 -18.18009 -17.87865 -16.70275 -16.57401 -16.14000 -15.70560 -15.62064 -15.38522 -15.27033 -14.98674 -14.98477 -14.86030 -14.49292 -14.02694 -13.91015 -13.55197 -13.07692 -12.89092 -12.66952 -12.40865 -12.07277 -11.99171 -11.59829 -11.02771 -10.93550 -10.44749 -10.27403 -9.98589 -8.89988 -8.07851 -6.13022 -0.49558 -0.31712 0.07100 0.55793 0.93431 1.40929 1.41806 1.48329 1.65594 2.31221 2.44909 2.81058 3.03450 3.22644 3.36215 3.45940 3.93370 4.28030 4.37132 4.56400 4.69653 4.95155 5.07950 5.20346 5.45093 5.60227 5.70513 5.79230 5.82311 6.38299 6.71370 6.88809 7.52096 9.01754 Molecular weight = 293.05amu Principal moments of inertia in cm(-1) A = 0.027694 B = 0.004298 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.790919 B = 6513.550370 C = 6996.176911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.034 3.966 3 Si 0.940 3.060 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.481 4.481 8 H 0.039 0.961 9 C 0.014 3.986 10 C 0.122 3.878 11 N -0.493 5.493 12 C 0.300 3.700 13 N -0.499 5.499 14 H 0.460 0.540 15 N -0.144 5.144 16 C -0.055 4.055 17 C 0.579 3.421 18 F -0.153 7.153 19 F -0.152 7.152 20 F -0.152 7.152 21 S 0.049 5.951 22 C -0.189 4.189 23 C -0.156 4.156 24 H 0.257 0.743 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.949 -15.178 -8.113 17.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.167 4.167 3 Si 0.767 3.233 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.519 4.519 8 H 0.058 0.942 9 C 0.013 3.987 10 C -0.009 4.009 11 N -0.220 5.220 12 C -0.090 4.090 13 N -0.240 5.240 14 H 0.311 0.689 15 N 0.038 4.962 16 C -0.358 4.358 17 C 0.520 3.480 18 F -0.134 7.134 19 F -0.134 7.134 20 F -0.133 7.133 21 S 0.274 5.726 22 C -0.226 4.226 23 C -0.194 4.194 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.087 0.913 27 H 0.111 0.889 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.565 -14.424 -7.921 17.078 hybrid contribution 0.510 1.362 -0.229 1.472 sum 5.075 -13.062 -8.151 16.211 Atomic orbital electron populations 1.70075 1.06789 1.26813 1.50499 1.25456 0.95386 1.01240 0.94591 0.85909 0.78644 0.80334 0.78429 1.20294 1.21108 1.20040 1.20244 0.92366 0.90025 1.49284 0.94229 1.18976 0.99054 0.94616 0.86080 1.21596 0.94539 0.95713 0.89003 1.71721 1.14097 1.23959 1.12227 1.25520 0.97421 0.92487 0.93587 1.45573 1.44208 1.06125 1.28064 0.68875 1.73280 1.13438 0.90947 1.18490 1.27410 1.07534 0.97565 1.03294 1.16254 0.75417 0.81064 0.75227 1.93289 1.64488 1.96457 1.59169 1.93304 1.85635 1.83578 1.50834 1.93301 1.51345 1.78666 1.89986 1.86275 1.51762 1.01332 1.33199 1.23126 0.97253 0.96537 1.05733 1.22483 0.94141 1.01096 1.01677 0.93357 0.94047 0.91298 0.88884 0.90547 0.91967 0.90122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.91 13.03 21.45 0.28 -50.63 16 2 C 0.03 1.83 5.38 84.66 0.46 2.28 16 3 Si 0.94 43.67 29.55 68.60 2.03 45.69 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 6 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.48 -25.95 8.05 25.60 0.21 -25.74 16 8 H 0.04 2.20 7.83 -2.91 -0.02 2.18 16 9 C 0.01 0.66 1.77 -52.93 -0.09 0.57 16 10 C 0.12 5.31 6.46 86.38 0.56 5.87 16 11 N -0.49 -20.76 9.88 -348.11 -3.44 -24.20 16 12 C 0.30 10.20 8.43 179.92 1.52 11.71 16 13 N -0.50 -14.18 6.93 -57.66 -0.40 -14.58 16 14 H 0.46 11.48 8.96 -214.77 -1.93 9.56 16 15 N -0.14 -3.70 11.65 -48.92 -0.57 -4.27 16 16 C -0.06 -1.34 6.92 88.73 0.61 -0.73 16 17 C 0.58 11.60 3.55 71.24 0.25 11.86 16 18 F -0.15 -3.01 17.09 44.97 0.77 -2.24 16 19 F -0.15 -2.99 17.30 44.97 0.78 -2.22 16 20 F -0.15 -2.89 17.30 44.97 0.78 -2.11 16 21 S 0.05 1.36 21.46 -56.49 -1.21 0.14 16 22 C -0.19 -7.76 9.88 30.60 0.30 -7.45 16 23 C -0.16 -6.97 9.56 30.60 0.29 -6.68 16 24 H 0.26 14.02 8.31 -92.70 -0.77 13.25 16 25 H 0.04 1.57 6.03 -2.38 -0.01 1.56 16 26 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 27 H 0.09 3.28 8.06 -2.39 -0.02 3.26 16 28 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 29 H 0.06 3.02 8.14 -2.39 -0.02 3.00 16 30 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -58.82 297.26 2.40 -56.41 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -0.71 Total: 6.30 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: 4.10 Total: -8.31 kcal Atomic # 7 Polarization: -89.55 SS G_CDS: -4.13 Total: -93.68 kcal Atomic # 9 Polarization: -8.89 SS G_CDS: 2.32 Total: -6.57 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -1.21 Total: 0.14 kcal Total: -58.82 2.40 -56.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619527827.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.019 kcal (2) G-P(sol) polarization free energy of solvation -58.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds