Wall clock time and date at job start Tue Mar 31 2020 06:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86794 * 120.00084 * 2 1 4 4 H 1.48502 * 109.46951 * 269.99569 * 3 2 1 5 5 H 1.48500 * 109.47211 * 29.99215 * 3 2 1 6 6 H 1.48502 * 109.47621 * 149.99676 * 3 2 1 7 7 C 1.39948 * 120.00199 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00041 * 197.87365 * 7 2 1 9 9 C 1.41397 * 119.99755 * 17.87115 * 7 2 1 10 10 C 1.40731 * 120.24358 * 24.37311 * 9 7 2 11 11 C 1.37600 * 119.74815 * 180.02562 * 10 9 7 12 12 C 1.38662 * 120.24356 * 359.72337 * 11 10 9 13 13 C 1.38617 * 120.50007 * 0.55727 * 12 11 10 14 14 S 1.76202 * 119.87265 * 179.71901 * 13 12 11 15 15 O 1.42097 * 106.39936 * 156.18112 * 14 13 12 16 16 O 1.42105 * 106.40369 * 23.26524 * 14 13 12 17 17 N 1.65590 * 107.21898 * 269.72441 * 14 13 12 18 18 C 1.40797 * 120.00198 * 65.00154 * 17 14 13 19 19 C 1.40225 * 126.06662 * 314.69061 * 18 17 14 20 20 N 1.30868 * 108.36302 * 179.87797 * 19 18 17 21 21 N 1.40076 * 108.36001 * 0.38041 * 20 19 18 22 22 H 0.96999 * 126.06554 * 179.73590 * 21 20 19 23 23 C 1.35703 * 126.07023 * 135.00157 * 18 17 14 24 24 C 1.37634 * 120.25013 * 359.44125 * 13 12 11 25 25 H 0.96996 * 120.00052 * 0.02562 * 1 2 3 26 26 H 1.08004 * 120.13080 * 359.97438 * 10 9 7 27 27 H 1.07996 * 119.88328 * 180.02562 * 11 10 9 28 28 H 1.08000 * 119.75165 * 180.29427 * 12 11 10 29 29 H 0.97005 * 120.00223 * 244.99897 * 17 14 13 30 30 H 1.08002 * 125.81749 * 0.02562 * 19 18 17 31 31 H 1.08000 * 126.22131 * 359.93925 * 23 18 17 32 32 H 1.07995 * 120.12749 * 180.25325 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0463 -1.4001 5 1 1.4396 2.6527 0.6999 6 1 3.5398 1.4402 0.7001 7 6 2.0080 -1.2120 0.0005 8 1 3.0490 -1.2344 0.2876 9 6 1.3522 -2.4071 -0.3747 10 6 0.2209 -2.3625 -1.2105 11 6 -0.4098 -3.5318 -1.5689 12 6 0.0689 -4.7512 -1.1144 13 6 1.1790 -4.8066 -0.2860 14 16 1.7688 -6.3646 0.2879 15 8 3.1422 -6.1822 0.6036 16 8 1.3073 -7.3356 -0.6415 17 7 0.9984 -6.6836 1.7185 18 6 -0.3953 -6.8829 1.7385 19 6 -1.3510 -6.0980 1.0776 20 7 -2.5362 -6.5926 1.3293 21 7 -2.3813 -7.7051 2.1664 22 1 -3.0954 -8.2620 2.5139 23 6 -1.0524 -7.8652 2.4055 24 6 1.8256 -3.6497 0.0852 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1515 -1.4140 -1.5687 27 1 -1.2779 -3.5001 -2.2106 28 1 -0.4294 -5.6644 -1.4045 29 1 1.5072 -6.7333 2.5429 30 1 -1.1441 -5.2341 0.4634 31 1 -0.6018 -8.6344 3.0151 32 1 2.6927 -3.6955 0.7273 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619569628.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:11 Heat of formation + Delta-G solvation = 23.022894 kcal Electronic energy + Delta-G solvation = -20952.538142 eV Core-core repulsion = 17620.615389 eV Total energy + Delta-G solvation = -3331.922753 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.00368 -37.72549 -36.69018 -35.34721 -34.76885 -33.90719 -31.21610 -30.11181 -29.82355 -28.30162 -25.56744 -22.26273 -21.84384 -21.01531 -20.90426 -19.24814 -18.29099 -17.74407 -17.02262 -15.98766 -15.74078 -15.16609 -14.94985 -14.53632 -14.48919 -14.18789 -13.50108 -13.36730 -13.07186 -12.59315 -11.92652 -11.85325 -11.59839 -11.54818 -11.45222 -11.40287 -11.19077 -11.01893 -10.88442 -10.63343 -10.41381 -9.76804 -9.53404 -9.49248 -9.36212 -8.08606 -8.06755 -7.71571 -6.95387 -4.55939 0.93224 1.88717 2.13192 2.59359 2.82965 2.87735 2.99501 3.03417 3.06104 3.56612 3.81427 4.21597 4.39686 4.85876 4.93566 5.19514 5.34336 5.45485 5.56618 6.02958 6.11311 6.21304 6.63241 6.65745 6.73968 6.82777 7.00737 7.15925 7.20232 7.29066 7.34582 7.69220 7.70264 7.78343 7.91386 8.37615 8.63996 8.68592 9.99752 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.020817 B = 0.005133 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.706632 B = 5453.985995 C = 6037.456376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.075 3.925 3 Si 0.913 3.087 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.458 4.458 8 H 0.084 0.916 9 C 0.093 3.907 10 C -0.119 4.119 11 C -0.116 4.116 12 C -0.160 4.160 13 C -0.630 4.630 14 S 2.688 3.312 15 O -0.967 6.967 16 O -0.965 6.965 17 N -1.037 6.037 18 C 0.013 3.987 19 C 0.034 3.966 20 N -0.275 5.275 21 N -0.481 5.481 22 H 0.442 0.558 23 C 0.041 3.959 24 C -0.121 4.121 25 H 0.284 0.716 26 H 0.126 0.874 27 H 0.101 0.899 28 H 0.111 0.889 29 H 0.418 0.582 30 H 0.208 0.792 31 H 0.180 0.820 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.838 -9.087 5.200 10.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.487 4.487 8 H 0.102 0.898 9 C 0.089 3.911 10 C -0.139 4.139 11 C -0.136 4.136 12 C -0.182 4.182 13 C -0.723 4.723 14 S 2.785 3.215 15 O -0.958 6.958 16 O -0.955 6.955 17 N -0.788 5.788 18 C -0.093 4.093 19 C -0.155 4.155 20 N -0.097 5.097 21 N -0.192 5.192 22 H 0.286 0.714 23 C -0.110 4.110 24 C -0.142 4.142 25 H 0.095 0.905 26 H 0.143 0.857 27 H 0.119 0.881 28 H 0.129 0.871 29 H 0.253 0.747 30 H 0.224 0.776 31 H 0.197 0.803 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.698 -9.368 4.461 11.015 hybrid contribution 0.648 1.090 0.834 1.517 sum -3.050 -8.278 5.294 10.289 Atomic orbital electron populations 1.69776 1.07658 1.29741 1.34383 1.25948 0.94792 1.01604 0.92023 0.86229 0.80515 0.80094 0.79499 1.19116 1.20208 1.18402 1.19658 0.98432 0.90958 1.39637 0.89791 1.17694 0.91775 0.91963 0.89642 1.21653 0.97589 0.97252 0.97370 1.20836 0.99366 0.92983 1.00388 1.20101 0.97485 0.97576 1.02999 1.29685 1.09863 1.17871 1.14845 1.01815 0.72641 0.74917 0.72162 1.93552 1.31042 1.87404 1.83764 1.93529 1.81917 1.59346 1.60659 1.52915 1.12029 1.86992 1.26835 1.17249 0.83869 0.98895 1.09331 1.25066 0.88818 1.00566 1.01010 1.77375 1.22054 0.99615 1.10692 1.46188 1.06209 1.26094 1.40665 0.71432 1.22340 0.84987 0.99749 1.03879 1.20792 1.00359 0.91544 1.01528 0.90484 0.85666 0.88121 0.87116 0.74676 0.77563 0.80255 0.86891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.17 10.95 55.55 0.61 -18.56 16 2 C 0.07 1.77 5.14 -17.34 -0.09 1.68 16 3 Si 0.91 17.76 29.59 -169.99 -5.03 12.73 16 4 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 6 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 7 C -0.46 -11.47 9.05 -37.74 -0.34 -11.81 16 8 H 0.08 2.03 7.91 -52.49 -0.41 1.61 16 9 C 0.09 2.33 5.58 -106.82 -0.60 1.74 16 10 C -0.12 -2.87 8.70 -38.87 -0.34 -3.21 16 11 C -0.12 -2.52 10.02 -39.66 -0.40 -2.92 16 12 C -0.16 -3.37 6.37 -39.28 -0.25 -3.62 16 13 C -0.63 -13.40 5.21 -39.66 -0.21 -13.61 16 14 S 2.69 50.13 5.61 -107.50 -0.60 49.52 16 15 O -0.97 -19.72 17.27 -57.17 -0.99 -20.71 16 16 O -0.96 -19.87 16.98 -57.17 -0.97 -20.84 16 17 N -1.04 -15.37 5.94 32.30 0.19 -15.18 16 18 C 0.01 0.20 6.41 -83.90 -0.54 -0.34 16 19 C 0.03 0.59 10.71 -17.22 -0.18 0.40 16 20 N -0.28 -4.37 12.69 30.70 0.39 -3.98 16 21 N -0.48 -5.52 7.41 30.71 0.23 -5.29 16 22 H 0.44 3.22 8.96 -182.62 -1.64 1.58 16 23 C 0.04 0.47 12.05 -16.62 -0.20 0.27 16 24 C -0.12 -2.81 9.26 -38.87 -0.36 -3.17 16 25 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 26 H 0.13 3.09 6.15 -52.48 -0.32 2.77 16 27 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 28 H 0.11 2.17 7.18 -52.49 -0.38 1.79 16 29 H 0.42 4.84 8.96 -34.47 -0.31 4.54 16 30 H 0.21 3.84 4.23 -52.49 -0.22 3.62 16 31 H 0.18 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.11 2.51 7.60 -52.49 -0.40 2.11 16 LS Contribution 291.67 15.07 4.40 4.40 Total: -1.00 -31.55 291.67 -8.94 -40.49 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -3.66 Total: 12.02 kcal Atomic # 6 Polarization: -31.10 SS G_CDS: -3.50 Total: -34.60 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 1.42 Total: -43.01 kcal Atomic # 8 Polarization: -39.59 SS G_CDS: -1.96 Total: -41.55 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.03 Total: 12.73 kcal Atomic # 16 Polarization: 50.13 SS G_CDS: -0.60 Total: 49.52 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.55 -8.94 -40.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619569628.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.515 kcal (2) G-P(sol) polarization free energy of solvation -31.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds