Wall clock time and date at job start Tue Mar 31 2020 06:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86794 * 120.00084 * 2 1 4 4 H 1.48502 * 109.46951 * 269.99569 * 3 2 1 5 5 H 1.48500 * 109.47211 * 29.99215 * 3 2 1 6 6 H 1.48502 * 109.47621 * 149.99676 * 3 2 1 7 7 C 1.39948 * 120.00199 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00041 * 197.87365 * 7 2 1 9 9 C 1.41397 * 119.99755 * 17.87115 * 7 2 1 10 10 C 1.40731 * 120.24358 * 24.37311 * 9 7 2 11 11 C 1.37600 * 119.74815 * 180.02562 * 10 9 7 12 12 C 1.38662 * 120.24356 * 359.72337 * 11 10 9 13 13 C 1.38617 * 120.50007 * 0.55727 * 12 11 10 14 14 S 1.76202 * 119.87265 * 179.71901 * 13 12 11 15 15 O 1.42097 * 106.39936 * 156.18112 * 14 13 12 16 16 O 1.42105 * 106.40369 * 23.26524 * 14 13 12 17 17 N 1.65590 * 107.21898 * 269.72441 * 14 13 12 18 18 C 1.40797 * 120.00198 * 65.00154 * 17 14 13 19 19 C 1.40225 * 126.06662 * 314.69061 * 18 17 14 20 20 N 1.30868 * 108.36302 * 179.87797 * 19 18 17 21 21 N 1.40076 * 108.36001 * 0.38041 * 20 19 18 22 22 H 0.96999 * 126.06554 * 179.73590 * 21 20 19 23 23 C 1.35703 * 126.07023 * 135.00157 * 18 17 14 24 24 C 1.37634 * 120.25013 * 359.44125 * 13 12 11 25 25 H 0.96996 * 120.00052 * 0.02562 * 1 2 3 26 26 H 1.08004 * 120.13080 * 359.97438 * 10 9 7 27 27 H 1.07996 * 119.88328 * 180.02562 * 11 10 9 28 28 H 1.08000 * 119.75165 * 180.29427 * 12 11 10 29 29 H 0.97005 * 120.00223 * 244.99897 * 17 14 13 30 30 H 1.08002 * 125.81749 * 0.02562 * 19 18 17 31 31 H 1.08000 * 126.22131 * 359.93925 * 23 18 17 32 32 H 1.07995 * 120.12749 * 180.25325 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0463 -1.4001 5 1 1.4396 2.6527 0.6999 6 1 3.5398 1.4402 0.7001 7 6 2.0080 -1.2120 0.0005 8 1 3.0490 -1.2344 0.2876 9 6 1.3522 -2.4071 -0.3747 10 6 0.2209 -2.3625 -1.2105 11 6 -0.4098 -3.5318 -1.5689 12 6 0.0689 -4.7512 -1.1144 13 6 1.1790 -4.8066 -0.2860 14 16 1.7688 -6.3646 0.2879 15 8 3.1422 -6.1822 0.6036 16 8 1.3073 -7.3356 -0.6415 17 7 0.9984 -6.6836 1.7185 18 6 -0.3953 -6.8829 1.7385 19 6 -1.3510 -6.0980 1.0776 20 7 -2.5362 -6.5926 1.3293 21 7 -2.3813 -7.7051 2.1664 22 1 -3.0954 -8.2620 2.5139 23 6 -1.0524 -7.8652 2.4055 24 6 1.8256 -3.6497 0.0852 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1515 -1.4140 -1.5687 27 1 -1.2779 -3.5001 -2.2106 28 1 -0.4294 -5.6644 -1.4045 29 1 1.5072 -6.7333 2.5429 30 1 -1.1441 -5.2341 0.4634 31 1 -0.6018 -8.6344 3.0151 32 1 2.6927 -3.6955 0.7273 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619569628.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:11 Heat of formation + Delta-G solvation = -0.927010 kcal Electronic energy + Delta-G solvation = -20953.576688 eV Core-core repulsion = 17620.615389 eV Total energy + Delta-G solvation = -3332.961299 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.08793 -39.49176 -38.27177 -36.93704 -35.97853 -35.67926 -32.38952 -31.85518 -31.56312 -29.41052 -27.38057 -23.73844 -23.32155 -22.65304 -22.11961 -20.64398 -19.79545 -19.04195 -18.46095 -17.72744 -17.09753 -16.74214 -16.61938 -16.02931 -15.61191 -15.40219 -15.21670 -15.04242 -14.31789 -14.22234 -13.57707 -13.35078 -13.27269 -13.15473 -13.09633 -13.03946 -12.78356 -12.59695 -12.35292 -12.18326 -11.65591 -11.52455 -11.17159 -11.11581 -10.62021 -9.85050 -9.52876 -9.18312 -8.72198 -6.43413 -0.55937 0.39114 0.83502 0.87703 1.39043 1.47174 1.51975 1.63507 1.86846 2.18783 2.25880 2.55246 2.77218 3.44515 3.53708 3.94565 4.03263 4.31945 4.38279 4.44635 4.54847 4.86193 4.89253 4.95287 5.09847 5.21768 5.41214 5.49900 5.56388 5.89888 5.95052 6.10156 6.14014 6.40567 6.53577 6.65499 6.80895 6.85314 8.25418 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.020817 B = 0.005133 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.706632 B = 5453.985995 C = 6037.456376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.038 3.962 3 Si 0.983 3.017 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.495 4.495 8 H 0.081 0.919 9 C 0.064 3.936 10 C -0.140 4.140 11 C -0.119 4.119 12 C -0.151 4.151 13 C -0.637 4.637 14 S 2.721 3.279 15 O -0.985 6.985 16 O -0.980 6.980 17 N -1.018 6.018 18 C -0.027 4.027 19 C 0.007 3.993 20 N -0.303 5.303 21 N -0.459 5.459 22 H 0.461 0.539 23 C 0.080 3.920 24 C -0.139 4.139 25 H 0.292 0.708 26 H 0.113 0.887 27 H 0.125 0.875 28 H 0.127 0.873 29 H 0.434 0.566 30 H 0.184 0.816 31 H 0.234 0.766 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.189 -10.781 6.460 12.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.178 4.178 3 Si 0.804 3.196 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.182 1.182 7 C -0.524 4.524 8 H 0.099 0.901 9 C 0.061 3.939 10 C -0.160 4.160 11 C -0.138 4.138 12 C -0.171 4.171 13 C -0.727 4.727 14 S 2.814 3.186 15 O -0.975 6.975 16 O -0.970 6.970 17 N -0.774 5.774 18 C -0.134 4.134 19 C -0.181 4.181 20 N -0.127 5.127 21 N -0.172 5.172 22 H 0.310 0.690 23 C -0.072 4.072 24 C -0.160 4.160 25 H 0.103 0.897 26 H 0.131 0.869 27 H 0.143 0.857 28 H 0.145 0.855 29 H 0.274 0.726 30 H 0.201 0.799 31 H 0.251 0.749 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.082 -11.050 5.716 13.093 hybrid contribution 0.619 1.386 0.520 1.605 sum -3.463 -9.664 6.236 12.012 Atomic orbital electron populations 1.69816 1.08922 1.30995 1.34815 1.26734 0.95505 1.04475 0.91045 0.85180 0.79110 0.75779 0.79578 1.18685 1.19153 1.18216 1.19886 0.98638 0.92195 1.41673 0.90120 1.18037 0.92568 0.92943 0.90352 1.21642 0.98269 0.97643 0.98417 1.21118 0.99822 0.92556 1.00322 1.20345 0.97046 0.97873 1.01868 1.30163 1.09252 1.19035 1.14202 1.00850 0.71873 0.73409 0.72481 1.93523 1.32431 1.87314 1.84237 1.93505 1.82192 1.59058 1.62217 1.52319 1.12312 1.86539 1.26256 1.17468 0.83420 1.00715 1.11747 1.24822 0.90173 1.00890 1.02176 1.77300 1.21728 1.01396 1.12238 1.46281 1.07299 1.24729 1.38908 0.68992 1.23070 0.84183 0.98619 1.01336 1.20874 1.00978 0.91858 1.02276 0.89737 0.86871 0.85666 0.85492 0.72644 0.79928 0.74943 0.86733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.96 10.95 21.83 0.24 -40.72 16 2 C 0.04 1.85 5.14 85.26 0.44 2.29 16 3 Si 0.98 36.89 29.59 68.60 2.03 38.92 16 4 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 5 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 6 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 7 C -0.49 -25.86 9.05 23.46 0.21 -25.64 16 8 H 0.08 4.08 7.91 -2.91 -0.02 4.06 16 9 C 0.06 3.37 5.58 -21.29 -0.12 3.25 16 10 C -0.14 -7.05 8.70 22.73 0.20 -6.85 16 11 C -0.12 -5.27 10.02 22.22 0.22 -5.05 16 12 C -0.15 -6.38 6.37 22.46 0.14 -6.23 16 13 C -0.64 -27.39 5.21 22.22 0.12 -27.28 16 14 S 2.72 98.93 5.61 -56.49 -0.32 98.61 16 15 O -0.98 -39.43 17.27 -128.00 -2.21 -41.64 16 16 O -0.98 -38.97 16.98 -128.00 -2.17 -41.14 16 17 N -1.02 -28.10 5.94 -51.74 -0.31 -28.41 16 18 C -0.03 -0.76 6.41 37.59 0.24 -0.52 16 19 C 0.01 0.24 10.71 85.32 0.91 1.16 16 20 N -0.30 -9.15 12.69 -56.77 -0.72 -9.87 16 21 N -0.46 -8.89 7.41 -56.75 -0.42 -9.31 16 22 H 0.46 4.82 8.96 -213.34 -1.91 2.91 16 23 C 0.08 1.47 12.05 83.46 1.01 2.48 16 24 C -0.14 -6.68 9.26 22.73 0.21 -6.47 16 25 H 0.29 13.12 8.30 -92.71 -0.77 12.36 16 26 H 0.11 5.87 6.15 -2.91 -0.02 5.85 16 27 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 28 H 0.13 4.92 7.18 -2.91 -0.02 4.90 16 29 H 0.43 8.94 8.96 -96.74 -0.87 8.08 16 30 H 0.18 6.90 4.23 -2.91 -0.01 6.89 16 31 H 0.23 1.68 8.06 -2.91 -0.02 1.66 16 32 H 0.11 5.30 7.60 -2.91 -0.02 5.28 16 Total: -1.00 -70.31 291.67 -1.87 -72.17 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: -1.57 Total: 30.24 kcal Atomic # 6 Polarization: -72.45 SS G_CDS: 3.58 Total: -68.86 kcal Atomic # 7 Polarization: -87.10 SS G_CDS: -1.21 Total: -88.30 kcal Atomic # 8 Polarization: -78.39 SS G_CDS: -4.38 Total: -82.78 kcal Atomic # 14 Polarization: 36.89 SS G_CDS: 2.03 Total: 38.92 kcal Atomic # 16 Polarization: 98.93 SS G_CDS: -0.32 Total: 98.61 kcal Total: -70.31 -1.87 -72.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619569628.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.248 kcal (2) G-P(sol) polarization free energy of solvation -70.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds