Wall clock time and date at job start Tue Mar 31 2020 06:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38349 * 127.15068 * 2 1 4 4 C 1.39776 * 126.56574 * 0.02562 * 3 2 1 5 5 H 1.07999 * 119.99778 * 5.78312 * 4 3 2 6 6 C 1.40085 * 120.00068 * 185.77562 * 4 3 2 7 7 N 1.30808 * 119.99942 * 184.12744 * 6 4 3 8 8 Si 1.86799 * 119.99669 * 4.13543 * 6 4 3 9 9 H 1.48509 * 109.46950 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47355 * 299.99259 * 8 6 4 11 11 H 1.48501 * 109.47215 * 59.99928 * 8 6 4 12 12 N 1.33098 * 106.87112 * 179.74281 * 3 2 1 13 13 N 1.28516 * 109.74302 * 0.24028 * 12 3 2 14 14 C 1.32388 * 110.20609 * 0.02562 * 13 12 3 15 15 S 1.76202 * 126.26021 * 180.02562 * 14 13 12 16 16 C 1.81001 * 99.99784 * 359.97438 * 15 14 13 17 17 C 1.50698 * 109.47052 * 179.97438 * 16 15 14 18 18 O 1.21326 * 120.00148 * 359.97438 * 17 16 15 19 19 C 1.46597 * 120.00012 * 179.97438 * 17 16 15 20 20 C 1.47199 * 127.23410 * 180.02562 * 19 17 16 21 21 C 1.34091 * 105.93619 * 180.02562 * 20 19 17 22 22 O 1.34234 * 109.22546 * 359.97438 * 21 20 19 23 23 C 1.33544 * 110.98252 * 359.72981 * 22 21 20 24 24 H 1.08991 * 109.47295 * 89.99934 * 1 2 3 25 25 H 1.08996 * 109.46934 * 210.00007 * 1 2 3 26 26 H 1.09000 * 109.46691 * 329.99366 * 1 2 3 27 27 H 0.97000 * 120.00392 * 354.84969 * 7 6 4 28 28 H 1.09003 * 109.47327 * 299.99328 * 16 15 14 29 29 H 1.08993 * 109.47535 * 59.99722 * 16 15 14 30 30 H 1.07997 * 127.03310 * 0.02562 * 20 19 17 31 31 H 1.07996 * 125.38250 * 180.02562 * 21 20 19 32 32 H 1.08007 * 125.84203 * 180.32010 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9086 2.4444 0.0005 5 1 0.8640 2.7018 0.0952 6 6 2.8708 3.4552 -0.1217 7 7 2.5140 4.7111 -0.0402 8 14 4.6632 3.0096 -0.4011 9 1 5.4729 4.2509 -0.4958 10 1 5.1511 2.1853 0.7337 11 1 4.7906 2.2385 -1.6638 12 7 3.5490 0.6414 0.0057 13 7 3.5370 -0.6437 0.0041 14 6 2.2904 -1.0893 -0.0033 15 16 1.7873 -2.7780 -0.0075 16 6 3.4059 -3.5881 0.0002 17 6 3.2192 -5.0835 -0.0015 18 8 2.1014 -5.5553 -0.0069 19 6 4.3881 -5.9681 0.0033 20 6 4.3911 -7.4401 0.0019 21 6 5.6812 -7.8057 0.0084 22 8 6.4520 -6.7067 0.0129 23 6 5.7058 -5.5992 0.0038 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.5753 4.9451 0.0298 28 1 3.9654 -3.2905 -0.8867 29 1 3.9562 -3.2921 0.8932 30 1 3.5303 -8.0923 -0.0032 31 1 6.0428 -8.8233 0.0089 32 1 6.0786 -4.5855 0.0000 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000629178889.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:24 Heat of formation + Delta-G solvation = 39.811277 kcal Electronic energy + Delta-G solvation = -19774.885459 eV Core-core repulsion = 16443.690704 eV Total energy + Delta-G solvation = -3331.194754 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.80262 -40.97680 -39.16930 -33.97972 -33.61902 -33.24576 -31.22833 -30.07284 -29.09460 -26.77065 -25.38769 -23.80005 -21.73434 -21.50106 -20.40872 -19.67764 -18.24874 -18.02176 -16.82860 -16.45010 -15.84958 -15.35436 -15.30739 -14.92814 -14.91509 -14.48366 -13.83462 -13.56544 -13.21648 -13.12854 -12.78753 -12.66310 -12.54255 -12.44851 -11.96225 -11.18910 -10.90765 -10.43160 -10.11160 -10.09884 -9.93334 -9.62407 -9.44288 -9.15752 -9.09399 -8.72469 -8.44446 -7.46525 -7.13819 -4.88367 0.84403 1.62790 1.70005 2.49721 2.64617 2.77703 2.85991 3.53317 3.55580 3.77325 3.83711 4.01021 4.10000 4.37010 4.38345 4.50176 4.95440 5.06752 5.11705 5.30306 5.36544 5.40910 5.48142 5.67287 5.71454 5.90008 5.97840 6.31930 6.60052 6.64494 7.07899 7.31234 7.36117 7.48094 8.00791 8.30694 8.51500 9.91999 10.05188 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.025654 B = 0.003760 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.181271 B = 7444.044121 C = 8507.152140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.511 5.511 3 C 0.346 3.654 4 C -0.491 4.491 5 H 0.083 0.917 6 C 0.064 3.936 7 N -0.806 5.806 8 Si 1.113 2.887 9 H -0.311 1.311 10 H -0.260 1.260 11 H -0.281 1.281 12 N -0.416 5.416 13 N -0.273 5.273 14 C 0.054 3.946 15 S 0.013 5.987 16 C -0.158 4.158 17 C 0.442 3.558 18 O -0.440 6.440 19 C -0.265 4.265 20 C -0.168 4.168 21 C -0.045 4.045 22 O -0.173 6.173 23 C 0.048 3.952 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.284 0.716 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.159 0.841 31 H 0.208 0.792 32 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.852 -19.009 -0.065 19.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.212 5.212 3 C 0.103 3.897 4 C -0.532 4.532 5 H 0.101 0.899 6 C -0.159 4.159 7 N -0.430 5.430 8 Si 0.942 3.058 9 H -0.241 1.241 10 H -0.186 1.186 11 H -0.207 1.207 12 N -0.266 5.266 13 N -0.117 5.117 14 C -0.319 4.319 15 S 0.239 5.761 16 C -0.308 4.308 17 C 0.318 3.682 18 O -0.314 6.314 19 C -0.269 4.269 20 C -0.187 4.187 21 C -0.110 4.110 22 O -0.068 6.068 23 C -0.022 4.022 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.144 0.856 29 H 0.144 0.856 30 H 0.177 0.823 31 H 0.225 0.775 32 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 4.399 -19.085 -0.182 19.586 hybrid contribution -2.275 0.154 0.178 2.287 sum 2.124 -18.931 -0.004 19.050 Atomic orbital electron populations 1.21563 0.77648 1.03044 1.02132 1.45809 1.06470 1.04800 1.64096 1.21714 0.85084 0.89079 0.93856 1.19409 0.97478 0.87228 1.49106 0.89855 1.27370 1.08511 0.91261 0.88750 1.70671 1.21609 1.18475 1.32280 0.82692 0.70574 0.72169 0.80378 1.24112 1.18598 1.20711 1.73964 1.15945 1.00908 1.35769 1.74213 1.15425 1.05733 1.16323 1.25682 0.91024 0.93898 1.21329 1.85164 1.06468 0.89069 1.95372 1.23929 1.02231 0.95417 1.09181 1.20839 0.87395 0.88475 0.71478 1.90569 1.26380 1.78326 1.36165 1.21925 0.94475 0.94707 1.15796 1.22884 0.97759 0.93182 1.04848 1.23926 0.89444 0.90621 1.07053 1.83797 1.38445 1.14201 1.70348 1.24899 0.89140 0.90980 0.97223 0.92043 0.91068 0.90202 0.90507 0.85575 0.85598 0.82348 0.77537 0.76266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.79 10.89 59.85 0.65 2.44 16 2 N -0.51 -11.77 3.26 -123.18 -0.40 -12.18 16 3 C 0.35 9.13 7.27 -154.81 -1.13 8.00 16 4 C -0.49 -13.09 9.50 -38.31 -0.36 -13.46 16 5 H 0.08 2.16 7.46 -52.49 -0.39 1.76 16 6 C 0.06 1.71 5.52 -17.29 -0.10 1.61 16 7 N -0.81 -21.51 13.65 55.56 0.76 -20.75 16 8 Si 1.11 27.61 25.90 -169.99 -4.40 23.20 16 9 H -0.31 -7.42 7.11 56.52 0.40 -7.02 16 10 H -0.26 -6.62 6.76 56.52 0.38 -6.24 16 11 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 12 N -0.42 -11.30 7.52 31.26 0.23 -11.07 16 13 N -0.27 -6.74 11.62 30.89 0.36 -6.38 16 14 C 0.05 1.21 8.09 -87.28 -0.71 0.51 16 15 S 0.01 0.22 20.92 -107.50 -2.25 -2.03 16 16 C -0.16 -2.22 5.19 36.00 0.19 -2.03 16 17 C 0.44 5.91 7.14 -30.94 -0.22 5.69 16 18 O -0.44 -7.09 16.49 5.52 0.09 -7.00 16 19 C -0.27 -2.91 6.29 -103.39 -0.65 -3.56 16 20 C -0.17 -1.60 11.01 -37.40 -0.41 -2.01 16 21 C -0.04 -0.33 12.02 29.27 0.35 0.02 16 22 O -0.17 -1.51 10.51 7.88 0.08 -1.43 16 23 C 0.05 0.42 11.64 30.23 0.35 0.77 16 24 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.07 1.11 7.85 -51.93 -0.41 0.70 16 26 H 0.08 1.37 7.48 -51.93 -0.39 0.98 16 27 H 0.28 7.19 8.72 -40.82 -0.36 6.83 16 28 H 0.13 1.67 8.14 -51.91 -0.42 1.25 16 29 H 0.13 1.67 8.14 -51.92 -0.42 1.24 16 30 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.21 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.22 1.31 8.02 -52.48 -0.42 0.89 16 LS Contribution 305.47 15.07 4.60 4.60 Total: -1.00 -33.68 305.47 -5.85 -39.53 By element: Atomic # 1 Polarization: -1.60 SS G_CDS: -2.89 Total: -4.49 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -2.03 Total: -2.01 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: 0.95 Total: -50.37 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.17 Total: -8.43 kcal Atomic # 14 Polarization: 27.61 SS G_CDS: -4.40 Total: 23.20 kcal Atomic # 16 Polarization: 0.22 SS G_CDS: -2.25 Total: -2.03 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.68 -5.85 -39.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000629178889.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.340 kcal (2) G-P(sol) polarization free energy of solvation -33.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds