Wall clock time and date at job start Tue Mar 31 2020 06:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38349 * 127.15068 * 2 1 4 4 C 1.39776 * 126.56574 * 0.02562 * 3 2 1 5 5 H 1.07999 * 119.99778 * 5.78312 * 4 3 2 6 6 C 1.40085 * 120.00068 * 185.77562 * 4 3 2 7 7 N 1.30808 * 119.99942 * 184.12744 * 6 4 3 8 8 Si 1.86799 * 119.99669 * 4.13543 * 6 4 3 9 9 H 1.48509 * 109.46950 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47355 * 299.99259 * 8 6 4 11 11 H 1.48501 * 109.47215 * 59.99928 * 8 6 4 12 12 N 1.33098 * 106.87112 * 179.74281 * 3 2 1 13 13 N 1.28516 * 109.74302 * 0.24028 * 12 3 2 14 14 C 1.32388 * 110.20609 * 0.02562 * 13 12 3 15 15 S 1.76202 * 126.26021 * 180.02562 * 14 13 12 16 16 C 1.81001 * 99.99784 * 359.97438 * 15 14 13 17 17 C 1.50698 * 109.47052 * 179.97438 * 16 15 14 18 18 O 1.21326 * 120.00148 * 359.97438 * 17 16 15 19 19 C 1.46597 * 120.00012 * 179.97438 * 17 16 15 20 20 C 1.47199 * 127.23410 * 180.02562 * 19 17 16 21 21 C 1.34091 * 105.93619 * 180.02562 * 20 19 17 22 22 O 1.34234 * 109.22546 * 359.97438 * 21 20 19 23 23 C 1.33544 * 110.98252 * 359.72981 * 22 21 20 24 24 H 1.08991 * 109.47295 * 89.99934 * 1 2 3 25 25 H 1.08996 * 109.46934 * 210.00007 * 1 2 3 26 26 H 1.09000 * 109.46691 * 329.99366 * 1 2 3 27 27 H 0.97000 * 120.00392 * 354.84969 * 7 6 4 28 28 H 1.09003 * 109.47327 * 299.99328 * 16 15 14 29 29 H 1.08993 * 109.47535 * 59.99722 * 16 15 14 30 30 H 1.07997 * 127.03310 * 0.02562 * 20 19 17 31 31 H 1.07996 * 125.38250 * 180.02562 * 21 20 19 32 32 H 1.08007 * 125.84203 * 180.32010 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9086 2.4444 0.0005 5 1 0.8640 2.7018 0.0952 6 6 2.8708 3.4552 -0.1217 7 7 2.5140 4.7111 -0.0402 8 14 4.6632 3.0096 -0.4011 9 1 5.4729 4.2509 -0.4958 10 1 5.1511 2.1853 0.7337 11 1 4.7906 2.2385 -1.6638 12 7 3.5490 0.6414 0.0057 13 7 3.5370 -0.6437 0.0041 14 6 2.2904 -1.0893 -0.0033 15 16 1.7873 -2.7780 -0.0075 16 6 3.4059 -3.5881 0.0002 17 6 3.2192 -5.0835 -0.0015 18 8 2.1014 -5.5553 -0.0069 19 6 4.3881 -5.9681 0.0033 20 6 4.3911 -7.4401 0.0019 21 6 5.6812 -7.8057 0.0084 22 8 6.4520 -6.7067 0.0129 23 6 5.7058 -5.5992 0.0038 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.5753 4.9451 0.0298 28 1 3.9654 -3.2905 -0.8867 29 1 3.9562 -3.2921 0.8932 30 1 3.5303 -8.0923 -0.0032 31 1 6.0428 -8.8233 0.0089 32 1 6.0786 -4.5855 0.0000 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000629178889.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:24 Heat of formation + Delta-G solvation = 18.907130 kcal Electronic energy + Delta-G solvation = -19775.791930 eV Core-core repulsion = 16443.690704 eV Total energy + Delta-G solvation = -3332.101226 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.48788 -42.85292 -40.25850 -35.93823 -35.40973 -34.04684 -32.25691 -31.84501 -30.00370 -28.42106 -27.24085 -24.71376 -23.34574 -22.39820 -22.19835 -20.58675 -20.19234 -18.90770 -18.37754 -17.19581 -17.08897 -16.89211 -16.67544 -16.17386 -16.06518 -15.76801 -15.59352 -15.05388 -14.77203 -14.26435 -14.22473 -13.86608 -13.83913 -13.54916 -13.22435 -13.09710 -12.84925 -11.99530 -11.77108 -11.54785 -11.40532 -11.18109 -10.94336 -10.86515 -10.57891 -10.37026 -9.76608 -9.49114 -8.74296 -6.86495 -0.02241 0.16789 0.97538 1.03997 1.04085 1.55847 1.60636 1.89799 1.95452 2.02939 2.12452 2.20327 2.42357 2.80175 3.04395 3.65642 3.85082 3.92502 4.00659 4.24621 4.32098 4.35100 4.45665 4.54337 4.58525 4.68898 4.75680 5.03718 5.22561 5.32701 5.36887 5.66965 5.96703 5.99995 6.30235 6.38828 6.56001 7.92314 8.13138 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.025654 B = 0.003760 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.181271 B = 7444.044121 C = 8507.152140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.514 5.514 3 C 0.326 3.674 4 C -0.509 4.509 5 H 0.082 0.918 6 C 0.040 3.960 7 N -0.823 5.823 8 Si 1.147 2.853 9 H -0.298 1.298 10 H -0.273 1.273 11 H -0.292 1.292 12 N -0.444 5.444 13 N -0.302 5.302 14 C 0.072 3.928 15 S 0.031 5.969 16 C -0.156 4.156 17 C 0.453 3.547 18 O -0.477 6.477 19 C -0.297 4.297 20 C -0.195 4.195 21 C -0.026 4.026 22 O -0.176 6.176 23 C 0.067 3.933 24 H 0.078 0.922 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.286 0.714 28 H 0.138 0.862 29 H 0.138 0.862 30 H 0.160 0.840 31 H 0.248 0.752 32 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.585 -21.199 -0.109 21.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.214 5.214 3 C 0.079 3.921 4 C -0.550 4.550 5 H 0.100 0.900 6 C -0.179 4.179 7 N -0.448 5.448 8 Si 0.975 3.025 9 H -0.228 1.228 10 H -0.200 1.200 11 H -0.219 1.219 12 N -0.293 5.293 13 N -0.144 5.144 14 C -0.303 4.303 15 S 0.258 5.742 16 C -0.305 4.305 17 C 0.332 3.668 18 O -0.354 6.354 19 C -0.301 4.301 20 C -0.214 4.214 21 C -0.091 4.091 22 O -0.070 6.070 23 C -0.004 4.004 24 H 0.097 0.903 25 H 0.115 0.885 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.156 0.844 29 H 0.155 0.845 30 H 0.178 0.822 31 H 0.264 0.736 32 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 5.128 -21.267 -0.225 21.877 hybrid contribution -2.524 0.527 0.194 2.585 sum 2.605 -20.740 -0.031 20.903 Atomic orbital electron populations 1.21904 0.74811 1.04555 1.03768 1.46167 1.08354 1.04199 1.62682 1.21778 0.85718 0.89825 0.94742 1.19413 0.97439 0.87669 1.50495 0.89994 1.27849 1.09914 0.91419 0.88749 1.70669 1.21859 1.18535 1.33784 0.82210 0.69367 0.71885 0.79062 1.22773 1.19999 1.21942 1.73858 1.16837 1.02263 1.36321 1.74146 1.16650 1.04826 1.18807 1.26600 0.90498 0.96034 1.17137 1.85257 1.08864 0.85450 1.94662 1.24122 1.00301 0.95748 1.10372 1.20884 0.87718 0.88053 0.70158 1.90560 1.27698 1.78627 1.38538 1.21836 0.94384 0.95291 1.18569 1.23061 0.99013 0.92653 1.06642 1.24634 0.88527 0.91622 1.04327 1.83845 1.38645 1.14578 1.69954 1.25349 0.88311 0.91995 0.94739 0.90302 0.88528 0.89759 0.90316 0.84423 0.84453 0.82246 0.73628 0.73844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.11 10.89 127.77 1.39 4.50 16 2 N -0.51 -23.14 3.26 -543.63 -1.77 -24.91 16 3 C 0.33 17.20 7.27 133.23 0.97 18.17 16 4 C -0.51 -27.35 9.50 23.09 0.22 -27.13 16 5 H 0.08 4.28 7.46 -2.91 -0.02 4.26 16 6 C 0.04 2.19 5.52 85.29 0.47 2.66 16 7 N -0.82 -44.14 13.65 21.86 0.30 -43.84 16 8 Si 1.15 56.77 25.90 68.60 1.78 58.55 16 9 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 10 H -0.27 -13.99 6.76 99.48 0.67 -13.32 16 11 H -0.29 -14.83 7.11 99.48 0.71 -14.13 16 12 N -0.44 -24.11 7.52 -55.02 -0.41 -24.52 16 13 N -0.30 -14.63 11.62 -56.17 -0.65 -15.29 16 14 C 0.07 3.12 8.09 179.18 1.45 4.57 16 15 S 0.03 1.04 20.92 -56.49 -1.18 -0.15 16 16 C -0.16 -4.08 5.19 71.24 0.37 -3.71 16 17 C 0.45 11.46 7.14 27.87 0.20 11.66 16 18 O -0.48 -14.98 16.49 -3.17 -0.05 -15.03 16 19 C -0.30 -5.97 6.29 -19.07 -0.12 -6.09 16 20 C -0.19 -3.35 11.01 23.68 0.26 -3.09 16 21 C -0.03 -0.30 12.02 66.87 0.80 0.50 16 22 O -0.18 -2.51 10.51 5.27 0.06 -2.45 16 23 C 0.07 0.98 11.64 67.49 0.79 1.77 16 24 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 25 H 0.10 2.76 7.85 -2.39 -0.02 2.74 16 26 H 0.08 2.78 7.48 -2.39 -0.02 2.76 16 27 H 0.29 14.61 8.72 -92.71 -0.81 13.80 16 28 H 0.14 3.34 8.14 -2.39 -0.02 3.32 16 29 H 0.14 3.33 8.14 -2.40 -0.02 3.31 16 30 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 31 H 0.25 0.61 8.06 -2.91 -0.02 0.58 16 32 H 0.25 2.11 8.02 -2.91 -0.02 2.09 16 Total: -1.00 -72.57 305.47 5.95 -66.63 By element: Atomic # 1 Polarization: -3.88 SS G_CDS: 1.09 Total: -2.79 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 6.80 Total: 3.81 kcal Atomic # 7 Polarization: -106.03 SS G_CDS: -2.54 Total: -108.57 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.00 Total: -17.48 kcal Atomic # 14 Polarization: 56.77 SS G_CDS: 1.78 Total: 58.55 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -1.18 Total: -0.15 kcal Total: -72.57 5.95 -66.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000629178889.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.533 kcal (2) G-P(sol) polarization free energy of solvation -72.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds