Wall clock time and date at job start Tue Mar 31 2020 07:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39589 * 120.12845 * 188.26337 * 3 2 1 5 5 C 1.38570 * 119.78562 * 180.32084 * 4 3 2 6 6 N 1.39772 * 119.98225 * 179.97438 * 5 4 3 7 7 C 1.46500 * 119.99916 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47225 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99810 * 359.97438 * 8 7 6 10 10 N 1.34782 * 119.99987 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99684 * 179.97438 * 10 8 7 12 12 C 1.50701 * 109.46910 * 180.02562 * 11 10 8 13 13 H 1.08003 * 119.99808 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99928 * 179.97438 * 12 11 10 15 15 N 1.31521 * 120.00217 * 179.97438 * 14 12 11 16 16 Si 1.86795 * 120.00112 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47317 * 89.99891 * 16 14 12 18 18 H 1.48508 * 109.47229 * 209.99532 * 16 14 12 19 19 H 1.48499 * 109.47291 * 329.99841 * 16 14 12 20 20 C 1.39044 * 120.03328 * 359.93621 * 5 4 3 21 21 C 1.38171 * 120.25319 * 0.04032 * 20 5 4 22 22 C 1.38154 * 120.22036 * 0.02562 * 21 20 5 23 23 Cl 1.73601 * 120.02197 * 179.97438 * 22 21 20 24 24 H 1.08004 * 120.10380 * 0.27973 * 4 3 2 25 25 H 0.97003 * 120.00164 * 359.97259 * 6 5 4 26 26 H 1.09005 * 109.46813 * 299.99459 * 7 6 5 27 27 H 1.09004 * 109.47510 * 59.99256 * 7 6 5 28 28 H 0.96997 * 119.99821 * 0.02562 * 10 8 7 29 29 H 1.09005 * 109.47239 * 299.99914 * 11 10 8 30 30 H 1.08999 * 109.47073 * 60.00228 * 11 10 8 31 31 H 0.96997 * 120.00200 * 180.02562 * 15 14 12 32 32 H 1.07997 * 119.87563 * 180.02562 * 20 5 4 33 33 H 1.08000 * 119.88942 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2681 1.1957 0.1735 5 6 4.6538 1.1891 0.1657 6 7 5.3589 2.3835 0.3385 7 6 6.8239 2.3768 0.3308 8 6 7.3337 3.7802 0.5347 9 8 6.5504 4.6959 0.6724 10 7 8.6601 4.0178 0.5641 11 6 9.1556 5.3822 0.7618 12 6 10.6626 5.3753 0.7540 13 1 11.1977 4.4475 0.6152 14 6 11.3582 6.5537 0.9229 15 7 12.6734 6.5477 0.9167 16 14 10.4327 8.1585 1.1622 17 1 10.1942 8.3812 2.6110 18 1 11.2374 9.2803 0.6150 19 1 9.1309 8.0900 0.4511 20 6 5.3430 -0.0051 -0.0133 21 6 4.6515 -1.1890 -0.1847 22 6 3.2700 -1.1943 -0.1800 23 17 2.4064 -2.6847 -0.3965 24 1 2.7315 2.1226 0.3128 25 1 4.8784 3.2168 0.4635 26 1 7.1885 1.7371 1.1346 27 1 7.1806 1.9965 -0.6264 28 1 9.2865 3.2855 0.4536 29 1 8.7914 6.0212 -0.0427 30 1 8.7986 5.7634 1.7185 31 1 13.1627 7.3766 1.0359 32 1 6.4230 -0.0074 -0.0185 33 1 5.1928 -2.1132 -0.3236 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690182727.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:07 Heat of formation + Delta-G solvation = -10.074210 kcal Electronic energy + Delta-G solvation = -19060.083235 eV Core-core repulsion = 15724.681578 eV Total energy + Delta-G solvation = -3335.401658 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.03395 -40.33736 -37.92818 -37.48463 -36.34395 -35.80484 -34.41424 -32.43096 -31.38767 -29.88998 -27.38508 -25.10084 -23.90908 -23.18462 -21.57708 -19.89817 -19.34762 -18.23002 -17.54170 -17.30813 -16.84079 -16.71899 -16.38618 -15.87942 -15.47783 -15.15412 -14.94403 -14.87363 -14.53934 -14.26593 -14.03483 -14.00089 -13.92211 -13.61057 -13.15849 -12.99537 -12.72888 -12.58951 -12.56896 -11.93300 -11.83891 -11.63118 -10.94770 -10.90398 -10.88161 -10.07158 -9.95221 -8.45271 -8.38013 -6.44672 -0.31806 0.34045 1.15801 1.34027 1.37639 1.47943 1.50161 1.65782 1.90561 2.03205 2.29170 2.63798 2.79231 2.86368 2.97971 3.78218 3.81876 4.11042 4.23772 4.35118 4.42580 4.48635 4.78939 4.82716 4.85581 5.05180 5.17400 5.21239 5.28395 5.48336 5.50648 6.06659 6.18129 6.33284 6.56804 6.61857 6.83264 7.16862 7.37054 8.76385 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.040506 B = 0.002428 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.085622 B =11531.367647 C =12202.002446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.272 3.728 3 C 0.016 3.984 4 C -0.139 4.139 5 C 0.225 3.775 6 N -0.732 5.732 7 C 0.112 3.888 8 C 0.494 3.506 9 O -0.594 6.594 10 N -0.698 5.698 11 C 0.231 3.769 12 C -0.544 4.544 13 H 0.064 0.936 14 C 0.025 3.975 15 N -0.931 5.931 16 Si 0.935 3.065 17 H -0.267 1.267 18 H -0.278 1.278 19 H -0.259 1.259 20 C -0.150 4.150 21 C -0.049 4.049 22 C -0.064 4.064 23 Cl -0.074 7.074 24 H 0.144 0.856 25 H 0.409 0.591 26 H 0.125 0.875 27 H 0.125 0.875 28 H 0.414 0.586 29 H 0.013 0.987 30 H 0.012 0.988 31 H 0.271 0.729 32 H 0.168 0.832 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.949 -17.482 -2.491 22.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.043 4.043 3 C 0.012 3.988 4 C -0.165 4.165 5 C 0.120 3.880 6 N -0.363 5.363 7 C -0.015 4.015 8 C 0.281 3.719 9 O -0.476 6.476 10 N -0.348 5.348 11 C 0.107 3.893 12 C -0.582 4.582 13 H 0.082 0.918 14 C -0.175 4.175 15 N -0.570 5.570 16 Si 0.759 3.241 17 H -0.192 1.192 18 H -0.203 1.203 19 H -0.183 1.183 20 C -0.173 4.173 21 C -0.068 4.068 22 C -0.095 4.095 23 Cl -0.045 7.045 24 H 0.161 0.839 25 H 0.246 0.754 26 H 0.143 0.857 27 H 0.143 0.857 28 H 0.251 0.749 29 H 0.031 0.969 30 H 0.030 0.970 31 H 0.080 0.920 32 H 0.186 0.814 33 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -15.922 -16.835 -2.397 23.295 hybrid contribution 0.321 1.033 0.165 1.094 sum -15.600 -15.802 -2.232 22.317 Atomic orbital electron populations 1.81231 1.13068 1.08375 1.09586 1.25769 0.92828 0.92722 0.93006 1.15469 0.83259 0.93663 1.06441 1.20547 0.92529 0.97028 1.06379 1.17685 0.90175 0.86945 0.93239 1.44540 1.04714 1.07739 1.79265 1.21252 0.81484 0.92362 1.06393 1.21259 0.82401 0.92130 0.76090 1.90653 1.56557 1.47766 1.52645 1.45913 1.06641 1.11222 1.71043 1.19102 0.93232 0.81506 0.95479 1.21309 0.90004 0.95818 1.51080 0.91796 1.25585 0.95457 1.02448 0.94002 1.69978 1.07512 1.29145 1.50364 0.85896 0.79307 0.79477 0.79413 1.19209 1.20293 1.18286 1.21197 1.02017 0.89484 1.04625 1.21005 0.90048 1.00034 0.95715 1.20758 0.93220 0.85564 1.09955 1.98384 1.77261 1.33105 1.95776 0.83863 0.75363 0.85702 0.85727 0.74926 0.96871 0.96969 0.91954 0.81429 0.81337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -11.59 18.54 19.00 0.35 -11.24 16 2 C 0.27 5.82 14.37 88.33 1.27 7.09 16 3 C 0.02 0.28 5.73 -21.34 -0.12 0.15 16 4 C -0.14 -2.08 9.60 22.68 0.22 -1.87 16 5 C 0.23 3.05 6.65 38.15 0.25 3.30 16 6 N -0.73 -12.01 5.71 -343.22 -1.96 -13.97 16 7 C 0.11 1.71 5.39 85.63 0.46 2.17 16 8 C 0.49 14.05 7.90 87.66 0.69 14.74 16 9 O -0.59 -22.08 15.67 -3.04 -0.05 -22.13 16 10 N -0.70 -22.64 5.55 -466.77 -2.59 -25.23 16 11 C 0.23 10.15 4.50 85.63 0.38 10.53 16 12 C -0.54 -27.74 9.83 25.60 0.25 -27.49 16 13 H 0.06 3.39 7.84 -2.91 -0.02 3.37 16 14 C 0.03 1.36 5.47 84.65 0.46 1.83 16 15 N -0.93 -53.34 13.96 21.45 0.30 -53.04 16 16 Si 0.93 41.89 27.47 68.60 1.88 43.77 16 17 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 18 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.26 -11.38 6.54 99.48 0.65 -10.73 16 20 C -0.15 -1.38 9.30 22.45 0.21 -1.17 16 21 C -0.05 -0.46 9.81 22.23 0.22 -0.25 16 22 C -0.06 -0.92 6.35 22.62 0.14 -0.78 16 23 Cl -0.07 -1.20 28.01 -2.72 -0.08 -1.28 16 24 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 25 H 0.41 8.21 7.45 -92.71 -0.69 7.52 16 26 H 0.13 1.21 7.94 -2.38 -0.02 1.19 16 27 H 0.13 1.21 7.94 -2.38 -0.02 1.19 16 28 H 0.41 10.96 8.32 -92.71 -0.77 10.19 16 29 H 0.01 0.63 7.20 -2.38 -0.02 0.61 16 30 H 0.01 0.57 7.57 -2.39 -0.02 0.55 16 31 H 0.27 14.57 8.31 -92.71 -0.77 13.79 16 32 H 0.17 0.65 6.71 -2.91 -0.02 0.63 16 33 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 Total: -1.00 -68.14 315.95 1.98 -66.17 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -0.33 Total: 8.68 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 4.44 Total: 8.27 kcal Atomic # 7 Polarization: -99.59 SS G_CDS: -3.90 Total: -103.48 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.05 Total: -22.13 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 1.88 Total: 43.77 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal Total: -68.14 1.98 -66.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690182727.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.093 kcal (2) G-P(sol) polarization free energy of solvation -68.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds