Wall clock time and date at job start Tue Mar 31 2020 07:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99894 * 2 1 4 4 H 1.48505 * 109.47336 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47329 * 300.00165 * 3 2 1 6 6 H 1.48495 * 109.47211 * 60.00355 * 3 2 1 7 7 C 1.37877 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99703 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99944 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47086 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47280 * 180.02562 * 10 9 7 12 12 C 1.34775 * 119.99871 * 180.02562 * 11 10 9 13 13 O 1.21660 * 120.00293 * 359.97438 * 12 11 10 14 14 C 1.46939 * 119.99770 * 180.02562 * 12 11 10 15 15 C 1.33706 * 124.65969 * 179.97438 * 14 12 11 16 16 C 1.40365 * 115.57497 * 180.02562 * 15 14 12 17 17 C 1.40060 * 112.59523 * 359.97438 * 16 15 14 18 18 C 1.39837 * 119.95903 * 179.97438 * 17 16 15 19 19 C 1.37438 * 120.38332 * 0.02573 * 18 17 16 20 20 C 1.38880 * 120.22857 * 359.74077 * 19 18 17 21 21 C 1.37213 * 120.51135 * 0.49136 * 20 19 18 22 22 F 1.35104 * 119.83436 * 179.78375 * 21 20 19 23 23 S 1.75481 * 124.66501 * 0.02562 * 14 12 11 24 24 H 0.97000 * 120.00172 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47231 * 60.00401 * 9 7 2 26 26 H 1.09004 * 109.47191 * 300.00040 * 9 7 2 27 27 H 1.08998 * 109.47144 * 59.99875 * 10 9 7 28 28 H 1.09001 * 109.47286 * 300.00359 * 10 9 7 29 29 H 0.96993 * 119.99975 * 359.97438 * 11 10 9 30 30 H 1.07994 * 122.21435 * 0.03718 * 15 14 12 31 31 H 1.07999 * 119.80674 * 179.97438 * 18 17 16 32 32 H 1.08003 * 119.88293 * 179.97438 * 19 18 17 33 33 H 1.07997 * 119.74205 * 180.25889 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5127 -4.9308 -0.0012 12 6 2.1866 -6.0979 -0.0007 13 8 3.4032 -6.0980 -0.0003 14 6 1.4519 -7.3705 -0.0019 15 6 2.0242 -8.5789 -0.0021 16 6 1.1392 -9.6684 -0.0039 17 6 -0.2038 -9.2709 -0.0046 18 6 -1.2172 -10.2343 -0.0069 19 6 -0.9041 -11.5726 -0.0079 20 6 0.4235 -11.9800 -0.0122 21 6 1.4364 -11.0543 -0.0052 22 9 2.7232 -11.4660 -0.0051 23 16 -0.2971 -7.5132 -0.0046 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5570 0.8897 27 1 2.8719 -3.6043 0.8894 28 1 2.8719 -3.6043 -0.8905 29 1 0.5428 -4.9308 -0.0011 30 1 3.0964 -8.7081 -0.0008 31 1 -2.2520 -9.9250 -0.0069 32 1 -1.6934 -12.3099 -0.0093 33 1 0.6606 -13.0336 -0.0172 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701271998.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:42 Heat of formation + Delta-G solvation = -48.865917 kcal Electronic energy + Delta-G solvation = -19332.567730 eV Core-core repulsion = 15977.607682 eV Total energy + Delta-G solvation = -3354.960047 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.063 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.24194 -39.99491 -39.17719 -35.65968 -34.90393 -32.92747 -30.95426 -30.42636 -29.24071 -25.56687 -24.40391 -23.43453 -21.75986 -20.91411 -20.10109 -18.88443 -17.47692 -16.73257 -16.36600 -16.31002 -16.01930 -15.61037 -15.21609 -15.13702 -14.64058 -14.47696 -13.76813 -13.75372 -13.47696 -13.18564 -13.07060 -12.34889 -12.06628 -12.00135 -11.50163 -11.27025 -11.10352 -11.07993 -10.66069 -10.41626 -10.05517 -9.90498 -9.61606 -9.28774 -9.02395 -8.64813 -8.42668 -8.02464 -6.12499 -4.15583 -0.03921 0.64269 1.07138 1.53284 1.65248 3.04413 3.26830 3.32409 3.32871 3.35847 3.41831 3.81906 4.24365 4.36280 4.39640 4.55562 4.80040 4.91114 5.15657 5.24794 5.26735 5.54522 5.54861 5.77998 5.84204 5.87179 6.24652 6.26142 6.35204 6.62993 6.72275 7.45358 7.55380 7.77779 7.85519 8.21053 8.38772 8.90258 9.49549 10.99156 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.038014 B = 0.002860 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.403255 B = 9787.909773 C =10503.865196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.061 0.939 9 C 0.011 3.989 10 C 0.121 3.879 11 N -0.712 5.712 12 C 0.576 3.424 13 O -0.531 6.531 14 C -0.208 4.208 15 C -0.049 4.049 16 C -0.114 4.114 17 C -0.113 4.113 18 C -0.095 4.095 19 C -0.070 4.070 20 C -0.159 4.159 21 C 0.147 3.853 22 F -0.130 7.130 23 S 0.153 5.847 24 H 0.262 0.738 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.396 0.604 30 H 0.158 0.842 31 H 0.137 0.863 32 H 0.142 0.858 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.008 -24.343 -0.017 24.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.079 0.921 9 C -0.026 4.026 10 C -0.001 4.001 11 N -0.361 5.361 12 C 0.360 3.640 13 O -0.410 6.410 14 C -0.327 4.327 15 C -0.081 4.081 16 C -0.123 4.123 17 C -0.230 4.230 18 C -0.117 4.117 19 C -0.092 4.092 20 C -0.180 4.180 21 C 0.125 3.875 22 F -0.108 7.108 23 S 0.420 5.580 24 H 0.072 0.928 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.230 0.770 30 H 0.176 0.824 31 H 0.155 0.845 32 H 0.160 0.840 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.366 -22.991 -0.019 23.609 hybrid contribution 1.258 -0.145 0.004 1.267 sum -4.107 -23.136 -0.015 23.498 Atomic orbital electron populations 1.69960 1.06099 1.26840 1.50305 1.24998 0.94906 0.99461 0.94923 0.86444 0.80161 0.83253 0.77638 1.19563 1.20908 1.20906 1.21062 0.93303 0.90239 1.51435 0.92105 1.19351 0.94195 0.91046 0.98017 1.21855 0.96153 0.80775 1.01292 1.46265 1.10357 1.06473 1.72995 1.17055 0.86942 0.82316 0.77697 1.90816 1.12611 1.86965 1.50595 1.23942 0.97411 0.98208 1.13110 1.20104 1.01757 0.89109 0.97118 1.18130 0.92859 0.92742 1.08614 1.22914 0.95879 0.98552 1.05641 1.20541 0.98147 0.91549 1.01495 1.20912 0.95680 0.95333 0.97255 1.20924 0.92251 0.99772 1.05086 1.17592 0.78815 0.90377 1.00685 1.91526 1.35359 1.90627 1.93331 1.84360 1.01435 0.96781 1.75394 0.92844 0.95794 0.95807 0.92013 0.92018 0.76990 0.82437 0.84523 0.83990 0.83988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 8 H 0.06 1.64 7.74 -52.48 -0.41 1.24 16 9 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 10 C 0.12 2.57 5.61 -4.04 -0.02 2.54 16 11 N -0.71 -12.86 5.55 -61.54 -0.34 -13.20 16 12 C 0.58 10.35 7.79 -12.74 -0.10 10.25 16 13 O -0.53 -11.20 16.72 5.22 0.09 -11.11 16 14 C -0.21 -3.04 6.32 -37.65 -0.24 -3.27 16 15 C -0.05 -0.67 9.71 -40.37 -0.39 -1.06 16 16 C -0.11 -1.36 5.87 -107.08 -0.63 -1.99 16 17 C -0.11 -1.21 6.49 -38.30 -0.25 -1.46 16 18 C -0.09 -0.74 10.06 -39.27 -0.40 -1.14 16 19 C -0.07 -0.44 10.03 -39.64 -0.40 -0.84 16 20 C -0.16 -1.21 9.96 -39.72 -0.40 -1.60 16 21 C 0.15 1.54 7.36 -38.62 -0.28 1.25 16 22 F -0.13 -1.47 17.19 2.25 0.04 -1.43 16 23 S 0.15 1.77 22.26 -107.50 -2.39 -0.62 16 24 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.40 6.36 7.52 -40.82 -0.31 6.06 16 30 H 0.16 2.15 7.96 -52.49 -0.42 1.74 16 31 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.14 0.44 8.06 -52.48 -0.42 0.02 16 33 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 LS Contribution 312.99 15.07 4.72 4.72 Total: -1.00 -31.49 312.99 -9.06 -40.54 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -3.23 Total: 0.34 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -3.65 Total: -10.31 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.39 Total: -38.36 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.11 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -2.39 Total: -0.62 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.49 -9.06 -40.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701271998.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.321 kcal (2) G-P(sol) polarization free energy of solvation -31.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds