Wall clock time and date at job start Tue Mar 31 2020 07:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99894 * 2 1 4 4 H 1.48505 * 109.47336 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47329 * 300.00165 * 3 2 1 6 6 H 1.48495 * 109.47211 * 60.00355 * 3 2 1 7 7 C 1.37877 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99703 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99944 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47086 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47280 * 180.02562 * 10 9 7 12 12 C 1.34775 * 119.99871 * 180.02562 * 11 10 9 13 13 O 1.21660 * 120.00293 * 359.97438 * 12 11 10 14 14 C 1.46939 * 119.99770 * 180.02562 * 12 11 10 15 15 C 1.33706 * 124.65969 * 179.97438 * 14 12 11 16 16 C 1.40365 * 115.57497 * 180.02562 * 15 14 12 17 17 C 1.40060 * 112.59523 * 359.97438 * 16 15 14 18 18 C 1.39837 * 119.95903 * 179.97438 * 17 16 15 19 19 C 1.37438 * 120.38332 * 0.02573 * 18 17 16 20 20 C 1.38880 * 120.22857 * 359.74077 * 19 18 17 21 21 C 1.37213 * 120.51135 * 0.49136 * 20 19 18 22 22 F 1.35104 * 119.83436 * 179.78375 * 21 20 19 23 23 S 1.75481 * 124.66501 * 0.02562 * 14 12 11 24 24 H 0.97000 * 120.00172 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47231 * 60.00401 * 9 7 2 26 26 H 1.09004 * 109.47191 * 300.00040 * 9 7 2 27 27 H 1.08998 * 109.47144 * 59.99875 * 10 9 7 28 28 H 1.09001 * 109.47286 * 300.00359 * 10 9 7 29 29 H 0.96993 * 119.99975 * 359.97438 * 11 10 9 30 30 H 1.07994 * 122.21435 * 0.03718 * 15 14 12 31 31 H 1.07999 * 119.80674 * 179.97438 * 18 17 16 32 32 H 1.08003 * 119.88293 * 179.97438 * 19 18 17 33 33 H 1.07997 * 119.74205 * 180.25889 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5127 -4.9308 -0.0012 12 6 2.1866 -6.0979 -0.0007 13 8 3.4032 -6.0980 -0.0003 14 6 1.4519 -7.3705 -0.0019 15 6 2.0242 -8.5789 -0.0021 16 6 1.1392 -9.6684 -0.0039 17 6 -0.2038 -9.2709 -0.0046 18 6 -1.2172 -10.2343 -0.0069 19 6 -0.9041 -11.5726 -0.0079 20 6 0.4235 -11.9800 -0.0122 21 6 1.4364 -11.0543 -0.0052 22 9 2.7232 -11.4660 -0.0051 23 16 -0.2971 -7.5132 -0.0046 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5570 0.8897 27 1 2.8719 -3.6043 0.8894 28 1 2.8719 -3.6043 -0.8905 29 1 0.5428 -4.9308 -0.0011 30 1 3.0964 -8.7081 -0.0008 31 1 -2.2520 -9.9250 -0.0069 32 1 -1.6934 -12.3099 -0.0093 33 1 0.6606 -13.0336 -0.0172 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701271998.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:41 Heat of formation + Delta-G solvation = -67.910895 kcal Electronic energy + Delta-G solvation = -19333.393582 eV Core-core repulsion = 15977.607682 eV Total energy + Delta-G solvation = -3355.785900 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.063 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.04077 -41.11492 -40.30260 -36.89147 -36.29349 -34.91167 -32.05954 -31.58196 -30.49773 -27.20185 -25.55316 -24.43874 -23.09305 -22.41894 -21.26814 -19.90281 -18.66012 -18.31402 -17.53518 -17.24491 -16.87930 -16.77276 -16.63050 -16.48235 -16.24303 -15.44697 -15.14340 -15.11633 -14.36276 -14.33077 -14.29357 -14.09133 -13.27772 -12.99227 -12.82344 -12.73439 -12.54099 -12.38229 -12.24947 -11.98245 -11.75150 -11.54162 -11.22293 -10.70234 -10.63869 -10.27966 -9.77550 -8.84518 -8.25858 -6.36512 -0.95424 -0.03777 0.17499 0.60317 0.71391 1.40652 1.41627 1.54682 1.89644 1.95566 2.41224 2.43472 3.08527 3.09077 3.36694 3.62818 3.80554 3.84174 4.22585 4.35522 4.39487 4.41344 4.53318 4.65316 4.77619 4.87749 5.02704 5.07757 5.09865 5.23995 5.41004 5.52120 5.72129 5.74506 6.11456 6.31765 6.75806 6.92704 7.32906 8.86373 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.038014 B = 0.002860 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.403255 B = 9787.909773 C =10503.865196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.022 3.978 10 C 0.139 3.861 11 N -0.709 5.709 12 C 0.579 3.421 13 O -0.571 6.571 14 C -0.243 4.243 15 C -0.040 4.040 16 C -0.143 4.143 17 C -0.115 4.115 18 C -0.097 4.097 19 C -0.046 4.046 20 C -0.146 4.146 21 C 0.126 3.874 22 F -0.141 7.141 23 S 0.169 5.831 24 H 0.266 0.734 25 H 0.010 0.990 26 H 0.010 0.990 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.406 0.594 30 H 0.145 0.855 31 H 0.165 0.835 32 H 0.189 0.811 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.697 -26.477 -0.022 27.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.016 4.016 10 C 0.016 3.984 11 N -0.358 5.358 12 C 0.366 3.634 13 O -0.453 6.453 14 C -0.362 4.362 15 C -0.072 4.072 16 C -0.151 4.151 17 C -0.232 4.232 18 C -0.120 4.120 19 C -0.068 4.068 20 C -0.167 4.167 21 C 0.104 3.896 22 F -0.120 7.120 23 S 0.437 5.563 24 H 0.075 0.925 25 H 0.029 0.971 26 H 0.028 0.972 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.242 0.758 30 H 0.163 0.837 31 H 0.183 0.817 32 H 0.206 0.794 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -7.076 -25.137 -0.025 26.114 hybrid contribution 1.683 0.277 0.005 1.706 sum -5.393 -24.860 -0.019 25.438 Atomic orbital electron populations 1.70060 1.07529 1.28019 1.50884 1.25873 0.95817 1.03111 0.94341 0.85374 0.78929 0.78681 0.77925 1.18999 1.20180 1.20172 1.21459 0.93628 0.91714 1.51676 0.92164 1.19156 0.94200 0.91647 0.96561 1.21393 0.95193 0.81229 1.00578 1.46044 1.10769 1.05687 1.73324 1.17428 0.86622 0.83143 0.76257 1.90776 1.14394 1.87715 1.52386 1.23508 0.99474 0.96507 1.16684 1.20192 1.01660 0.89765 0.95627 1.18169 0.93134 0.93066 1.10770 1.23141 0.96172 0.98208 1.05666 1.21018 0.98774 0.91638 1.00551 1.21502 0.96140 0.95494 0.93621 1.21398 0.92035 1.00701 1.02545 1.17916 0.79198 0.90334 1.02160 1.91497 1.36305 1.90597 1.93588 1.84128 0.98373 0.98157 1.75649 0.92464 0.97138 0.97152 0.92750 0.92757 0.75784 0.83688 0.81719 0.79412 0.81030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.17 13.29 21.45 0.28 -53.89 16 2 C 0.01 0.42 5.46 84.66 0.46 0.88 16 3 Si 0.97 43.68 29.54 68.60 2.03 45.71 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 6 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.55 -30.63 9.11 25.60 0.23 -30.40 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.02 1.11 5.09 29.85 0.15 1.26 16 10 C 0.14 6.14 5.61 86.38 0.48 6.63 16 11 N -0.71 -26.72 5.55 -466.84 -2.59 -29.31 16 12 C 0.58 21.88 7.79 86.52 0.67 22.56 16 13 O -0.57 -25.47 16.72 -4.22 -0.07 -25.54 16 14 C -0.24 -7.41 6.32 23.52 0.15 -7.26 16 15 C -0.04 -1.13 9.71 21.76 0.21 -0.92 16 16 C -0.14 -3.34 5.87 -21.45 -0.13 -3.47 16 17 C -0.11 -2.26 6.49 23.10 0.15 -2.11 16 18 C -0.10 -1.13 10.06 22.47 0.23 -0.90 16 19 C -0.05 -0.34 10.03 22.23 0.22 -0.12 16 20 C -0.15 -1.63 9.96 22.18 0.22 -1.41 16 21 C 0.13 2.44 7.36 22.89 0.17 2.61 16 22 F -0.14 -3.13 17.19 44.97 0.77 -2.36 16 23 S 0.17 3.86 22.26 -56.49 -1.26 2.60 16 24 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 25 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 27 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.41 13.56 7.52 -92.71 -0.70 12.86 16 30 H 0.15 4.32 7.96 -2.91 -0.02 4.30 16 31 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 32 H 0.19 -0.22 8.06 -2.91 -0.02 -0.24 16 33 H 0.17 0.92 8.06 -2.91 -0.02 0.89 16 Total: -1.00 -70.24 312.99 2.85 -67.38 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 0.46 Total: 8.04 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: 3.23 Total: -12.64 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -2.31 Total: -83.20 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.07 Total: -25.54 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.77 Total: -2.36 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: 3.86 SS G_CDS: -1.26 Total: 2.60 kcal Total: -70.24 2.85 -67.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701271998.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.527 kcal (2) G-P(sol) polarization free energy of solvation -70.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds