Wall clock time and date at job start Tue Mar 31 2020 06:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86800 * 119.99864 * 2 1 4 4 H 1.48494 * 109.47230 * 240.00110 * 3 2 1 5 5 H 1.48503 * 109.47390 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47092 * 120.00128 * 3 2 1 7 7 C 1.38794 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00232 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00317 * 0.02562 * 7 2 1 10 10 C 1.80994 * 100.00189 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.47285 * 179.97438 * 10 9 7 12 12 O 1.20822 * 119.99545 * 0.02562 * 11 10 9 13 13 O 1.34224 * 120.00060 * 179.97438 * 11 10 9 14 14 C 1.45202 * 116.99794 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47172 * 180.02562 * 14 13 11 16 16 N 1.30099 * 124.95998 * 179.97438 * 15 14 13 17 17 C 1.35673 * 109.50098 * 180.02562 * 16 15 14 18 18 C 1.39833 * 133.87622 * 180.02562 * 17 16 15 19 19 C 1.38178 * 118.15563 * 179.74554 * 18 17 16 20 20 C 1.38619 * 119.55678 * 0.25776 * 19 18 17 21 21 N 1.31687 * 121.35733 * 359.97438 * 20 19 18 22 22 C 1.32353 * 121.57654 * 359.97438 * 21 20 19 23 23 N 1.36125 * 124.95448 * 0.58697 * 15 14 13 24 24 H 0.96994 * 126.27946 * 359.39558 * 23 15 14 25 25 H 0.96995 * 120.00316 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47261 * 59.99909 * 10 9 7 27 27 H 1.08998 * 109.47596 * 300.00144 * 10 9 7 28 28 H 1.08998 * 109.47102 * 60.00194 * 14 13 11 29 29 H 1.09000 * 109.47092 * 300.00187 * 14 13 11 30 30 H 1.08002 * 120.92543 * 0.02775 * 18 17 16 31 31 H 1.07997 * 120.22115 * 180.27314 * 19 18 17 32 32 H 1.07992 * 119.32145 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8913 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7958 -5.5015 0.0011 13 8 2.8409 -6.3388 0.0008 14 6 2.2612 -7.6701 0.0008 15 6 3.3634 -8.6979 0.0010 16 7 3.1814 -9.9861 0.0015 17 6 4.3844 -10.6134 0.0021 18 6 4.7777 -11.9553 0.0023 19 6 6.1302 -12.2383 -0.0025 20 6 7.0465 -11.1981 -0.0020 21 7 6.6557 -9.9406 0.0025 22 6 5.3732 -9.6135 0.0062 23 7 4.6946 -8.4138 0.0124 24 1 5.0928 -7.5294 0.0136 25 1 -0.4850 0.8400 0.0004 26 1 3.1246 -3.7312 0.8906 27 1 3.1246 -3.7313 -0.8894 28 1 1.6448 -7.7981 -0.8889 29 1 1.6454 -7.7982 0.8910 30 1 4.0448 -12.7485 0.0016 31 1 6.4711 -13.2631 -0.0069 32 1 8.1026 -11.4237 -0.0063 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726367111.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:50 Heat of formation + Delta-G solvation = 0.748113 kcal Electronic energy + Delta-G solvation = -19209.739008 eV Core-core repulsion = 15876.850348 eV Total energy + Delta-G solvation = -3332.888660 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.69307 -40.33125 -38.68673 -36.46520 -33.95556 -32.55625 -31.53070 -31.36610 -29.79931 -27.63021 -25.61964 -23.47422 -23.23655 -21.45734 -21.19109 -18.74940 -18.11013 -17.95207 -17.06236 -16.90354 -16.58810 -15.89060 -15.84247 -14.91077 -14.88046 -14.22083 -14.12174 -13.84431 -13.53521 -12.96996 -12.91261 -12.74995 -12.56182 -12.20669 -11.51123 -11.28852 -11.18501 -11.11473 -10.95111 -10.89871 -10.30277 -9.99741 -9.55178 -9.20901 -9.17500 -8.75989 -8.47274 -6.69771 -6.34155 -4.08225 0.43235 0.93687 2.09488 2.25120 2.34046 2.41347 3.11343 3.17367 3.22412 3.31342 3.49134 3.74157 4.06091 4.09103 4.35142 4.58649 4.62582 4.81604 4.85380 4.93304 5.01919 5.12696 5.21383 5.37107 5.53682 5.61985 5.71441 5.83640 5.92876 6.23455 6.31925 6.77321 7.32989 7.48130 7.54992 7.86850 8.22833 9.11297 10.73209 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.039869 B = 0.002543 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.136463 B =11009.825823 C =11691.508035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.075 3.925 3 Si 0.922 3.078 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.539 4.539 8 H 0.076 0.924 9 S -0.054 6.054 10 C -0.129 4.129 11 C 0.487 3.513 12 O -0.476 6.476 13 O -0.370 6.370 14 C 0.144 3.856 15 C 0.310 3.690 16 N -0.479 5.479 17 C 0.006 3.994 18 C -0.019 4.019 19 C -0.185 4.185 20 C 0.137 3.863 21 N -0.482 5.482 22 C 0.240 3.760 23 N -0.571 5.571 24 H 0.436 0.564 25 H 0.271 0.729 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.000 -21.437 -0.010 24.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.135 4.135 3 Si 0.748 3.252 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.687 4.687 8 H 0.094 0.906 9 S 0.172 5.828 10 C -0.277 4.277 11 C 0.328 3.672 12 O -0.360 6.360 13 O -0.289 6.289 14 C 0.068 3.932 15 C 0.042 3.958 16 N -0.201 5.201 17 C -0.115 4.115 18 C -0.046 4.046 19 C -0.207 4.207 20 C -0.031 4.031 21 N -0.194 5.194 22 C 0.004 3.996 23 N -0.185 5.185 24 H 0.277 0.723 25 H 0.081 0.919 26 H 0.123 0.877 27 H 0.124 0.876 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.161 0.839 31 H 0.163 0.837 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 10.101 -21.330 -0.001 23.601 hybrid contribution 2.201 1.361 0.000 2.588 sum 12.301 -19.970 -0.001 23.455 Atomic orbital electron populations 1.69988 1.05991 1.27892 1.46244 1.25005 0.95083 0.99152 0.94215 0.86166 0.79212 0.80877 0.78933 1.19811 1.20726 1.19814 1.22785 0.94986 0.91065 1.59850 0.90570 1.85465 1.03842 0.96553 1.96920 1.23342 1.07394 0.90207 1.06715 1.23356 0.85067 0.86450 0.72355 1.90715 1.16612 1.85207 1.43466 1.86371 1.42109 1.14684 1.85695 1.21138 0.89670 0.76033 1.06351 1.23071 0.82575 0.92447 0.97710 1.70294 1.25078 1.02173 1.22532 1.19680 0.89584 0.94925 1.07353 1.20757 0.96178 0.93071 0.94603 1.21913 0.92921 1.01240 1.04642 1.22616 1.00346 0.85656 0.94444 1.66410 1.14833 1.22472 1.15722 1.18974 0.90734 0.86588 1.03340 1.42669 1.06143 1.08314 1.61357 0.72265 0.91909 0.87651 0.87643 0.86919 0.86938 0.83914 0.83699 0.81616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.12 13.22 55.49 0.73 -24.39 16 2 C 0.08 2.06 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 20.65 29.55 -169.99 -5.02 15.62 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.54 -14.58 9.50 30.94 0.29 -14.29 16 8 H 0.08 1.94 7.80 -52.48 -0.41 1.53 16 9 S -0.05 -1.37 20.57 -107.50 -2.21 -3.58 16 10 C -0.13 -2.38 6.27 36.01 0.23 -2.16 16 11 C 0.49 8.23 7.98 36.01 0.29 8.52 16 12 O -0.48 -9.40 15.61 -18.75 -0.29 -9.69 16 13 O -0.37 -4.90 9.66 -39.24 -0.38 -5.28 16 14 C 0.14 1.67 6.09 36.00 0.22 1.88 16 15 C 0.31 3.76 7.91 -154.75 -1.22 2.53 16 16 N -0.48 -6.31 11.28 -8.19 -0.09 -6.40 16 17 C 0.01 0.07 7.24 -84.67 -0.61 -0.55 16 18 C -0.02 -0.17 10.22 -39.01 -0.40 -0.57 16 19 C -0.18 -1.25 10.09 -39.46 -0.40 -1.65 16 20 C 0.14 1.09 11.16 -17.47 -0.19 0.90 16 21 N -0.48 -5.54 10.38 -12.27 -0.13 -5.67 16 22 C 0.24 3.00 8.46 -155.63 -1.32 1.68 16 23 N -0.57 -6.64 6.04 -9.47 -0.06 -6.70 16 24 H 0.44 4.38 8.54 -40.82 -0.35 4.03 16 25 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.11 1.79 8.14 -51.91 -0.42 1.36 16 27 H 0.11 1.79 8.14 -51.92 -0.42 1.36 16 28 H 0.11 1.23 8.13 -51.93 -0.42 0.80 16 29 H 0.11 1.22 8.13 -51.93 -0.42 0.80 16 30 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 31 H 0.15 0.47 8.06 -52.49 -0.42 0.05 16 32 H 0.17 0.74 8.06 -52.49 -0.42 0.31 16 LS Contribution 309.42 15.07 4.66 4.66 Total: -1.00 -33.47 309.42 -8.85 -42.32 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -2.85 Total: 0.84 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -3.22 Total: -1.73 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.46 Total: -43.16 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.67 Total: -14.97 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: -1.37 SS G_CDS: -2.21 Total: -3.58 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.47 -8.85 -42.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726367111.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.068 kcal (2) G-P(sol) polarization free energy of solvation -33.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds