Wall clock time and date at job start Tue Mar 31 2020 06:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86800 * 119.99864 * 2 1 4 4 H 1.48494 * 109.47230 * 240.00110 * 3 2 1 5 5 H 1.48503 * 109.47390 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47092 * 120.00128 * 3 2 1 7 7 C 1.38794 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00232 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00317 * 0.02562 * 7 2 1 10 10 C 1.80994 * 100.00189 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.47285 * 179.97438 * 10 9 7 12 12 O 1.20822 * 119.99545 * 0.02562 * 11 10 9 13 13 O 1.34224 * 120.00060 * 179.97438 * 11 10 9 14 14 C 1.45202 * 116.99794 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47172 * 180.02562 * 14 13 11 16 16 N 1.30099 * 124.95998 * 179.97438 * 15 14 13 17 17 C 1.35673 * 109.50098 * 180.02562 * 16 15 14 18 18 C 1.39833 * 133.87622 * 180.02562 * 17 16 15 19 19 C 1.38178 * 118.15563 * 179.74554 * 18 17 16 20 20 C 1.38619 * 119.55678 * 0.25776 * 19 18 17 21 21 N 1.31687 * 121.35733 * 359.97438 * 20 19 18 22 22 C 1.32353 * 121.57654 * 359.97438 * 21 20 19 23 23 N 1.36125 * 124.95448 * 0.58697 * 15 14 13 24 24 H 0.96994 * 126.27946 * 359.39558 * 23 15 14 25 25 H 0.96995 * 120.00316 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47261 * 59.99909 * 10 9 7 27 27 H 1.08998 * 109.47596 * 300.00144 * 10 9 7 28 28 H 1.08998 * 109.47102 * 60.00194 * 14 13 11 29 29 H 1.09000 * 109.47092 * 300.00187 * 14 13 11 30 30 H 1.08002 * 120.92543 * 0.02775 * 18 17 16 31 31 H 1.07997 * 120.22115 * 180.27314 * 19 18 17 32 32 H 1.07992 * 119.32145 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8913 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7958 -5.5015 0.0011 13 8 2.8409 -6.3388 0.0008 14 6 2.2612 -7.6701 0.0008 15 6 3.3634 -8.6979 0.0010 16 7 3.1814 -9.9861 0.0015 17 6 4.3844 -10.6134 0.0021 18 6 4.7777 -11.9553 0.0023 19 6 6.1302 -12.2383 -0.0025 20 6 7.0465 -11.1981 -0.0020 21 7 6.6557 -9.9406 0.0025 22 6 5.3732 -9.6135 0.0062 23 7 4.6946 -8.4138 0.0124 24 1 5.0928 -7.5294 0.0136 25 1 -0.4850 0.8400 0.0004 26 1 3.1246 -3.7312 0.8906 27 1 3.1246 -3.7313 -0.8894 28 1 1.6448 -7.7981 -0.8889 29 1 1.6454 -7.7982 0.8910 30 1 4.0448 -12.7485 0.0016 31 1 6.4711 -13.2631 -0.0069 32 1 8.1026 -11.4237 -0.0063 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726367111.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:49 Heat of formation + Delta-G solvation = -20.623841 kcal Electronic energy + Delta-G solvation = -19210.665766 eV Core-core repulsion = 15876.850348 eV Total energy + Delta-G solvation = -3333.815417 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.50906 -41.62554 -39.44316 -37.74604 -34.74550 -34.61135 -32.45256 -32.24447 -31.05949 -28.56080 -27.67480 -24.22471 -24.04954 -22.62639 -22.18106 -19.99412 -19.44147 -19.08809 -18.28250 -18.04397 -17.41068 -16.92616 -16.87687 -16.86298 -16.04010 -15.60240 -15.27068 -14.92624 -14.55698 -14.20936 -13.96769 -13.77575 -13.50729 -13.42163 -13.18741 -12.87869 -12.68630 -12.31117 -12.13676 -12.08871 -11.82137 -11.74801 -11.14719 -10.38670 -10.30895 -9.94054 -9.56595 -8.73383 -8.37663 -6.17060 -0.30002 0.24257 0.79623 1.03062 1.36878 1.40770 1.44454 1.49762 1.52301 1.68758 2.23374 2.77948 2.79190 2.97679 3.26044 3.29906 3.61714 3.75918 3.81733 4.00109 4.04828 4.17609 4.17728 4.26177 4.44046 4.65403 4.75302 5.03373 5.08295 5.18179 5.41179 5.61602 5.98238 6.17698 6.46476 6.54465 6.83547 7.04498 8.71051 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.039869 B = 0.002543 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.136463 B =11009.825823 C =11691.508035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.016 3.984 3 Si 0.997 3.003 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.549 4.549 8 H 0.087 0.913 9 S -0.134 6.134 10 C -0.109 4.109 11 C 0.500 3.500 12 O -0.508 6.508 13 O -0.353 6.353 14 C 0.148 3.852 15 C 0.300 3.700 16 N -0.497 5.497 17 C -0.025 4.025 18 C -0.028 4.028 19 C -0.166 4.166 20 C 0.139 3.861 21 N -0.511 5.511 22 C 0.217 3.783 23 N -0.570 5.570 24 H 0.439 0.561 25 H 0.272 0.728 26 H 0.126 0.874 27 H 0.126 0.874 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.162 0.838 31 H 0.189 0.811 32 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.696 -22.857 -0.015 27.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.189 4.189 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.696 4.696 8 H 0.105 0.895 9 S 0.093 5.907 10 C -0.257 4.257 11 C 0.342 3.658 12 O -0.394 6.394 13 O -0.270 6.270 14 C 0.073 3.927 15 C 0.032 3.968 16 N -0.220 5.220 17 C -0.146 4.146 18 C -0.056 4.056 19 C -0.188 4.188 20 C -0.028 4.028 21 N -0.225 5.225 22 C -0.018 4.018 23 N -0.185 5.185 24 H 0.281 0.719 25 H 0.081 0.919 26 H 0.144 0.856 27 H 0.144 0.856 28 H 0.138 0.862 29 H 0.138 0.862 30 H 0.179 0.821 31 H 0.206 0.794 32 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 12.823 -22.772 -0.006 26.134 hybrid contribution 1.520 1.522 0.002 2.151 sum 14.342 -21.250 -0.004 25.637 Atomic orbital electron populations 1.70146 1.07878 1.28849 1.47650 1.26088 0.95957 1.03230 0.93615 0.85016 0.77814 0.75759 0.79515 1.18682 1.20508 1.18692 1.23160 0.95548 0.91581 1.59324 0.89477 1.85562 1.08975 0.99011 1.97192 1.23112 1.04461 0.89402 1.08716 1.22906 0.84588 0.86663 0.71679 1.90716 1.17970 1.85667 1.45093 1.86312 1.40884 1.14932 1.84910 1.21249 0.89728 0.74611 1.07142 1.22948 0.82771 0.92342 0.98777 1.70217 1.26082 1.02667 1.23029 1.20150 0.89177 0.96396 1.08863 1.21199 0.97835 0.92242 0.94284 1.22400 0.91597 1.03050 1.01708 1.23436 1.02457 0.84870 0.92048 1.66489 1.14353 1.24417 1.17200 1.19229 0.91394 0.86760 1.04462 1.42645 1.05979 1.08566 1.61280 0.71868 0.91862 0.85586 0.85579 0.86212 0.86240 0.82057 0.79358 0.77952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.75 13.22 21.65 0.29 -53.46 16 2 C 0.02 0.90 5.49 84.86 0.47 1.36 16 3 Si 1.00 42.03 29.55 68.60 2.03 44.06 16 4 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 5 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 7 C -0.55 -29.69 9.50 67.95 0.65 -29.05 16 8 H 0.09 4.35 7.80 -2.91 -0.02 4.32 16 9 S -0.13 -6.93 20.57 -56.49 -1.16 -8.09 16 10 C -0.11 -3.93 6.27 71.24 0.45 -3.48 16 11 C 0.50 16.63 7.98 71.24 0.57 17.20 16 12 O -0.51 -20.24 15.61 21.97 0.34 -19.89 16 13 O -0.35 -9.05 9.66 -51.36 -0.50 -9.55 16 14 C 0.15 3.39 6.09 71.24 0.43 3.82 16 15 C 0.30 7.26 7.91 137.90 1.09 8.35 16 16 N -0.50 -13.12 11.28 -179.82 -2.03 -15.15 16 17 C -0.03 -0.61 7.24 39.52 0.29 -0.32 16 18 C -0.03 -0.45 10.22 22.64 0.23 -0.22 16 19 C -0.17 -1.65 10.09 22.35 0.23 -1.43 16 20 C 0.14 1.80 11.16 84.81 0.95 2.75 16 21 N -0.51 -11.05 10.38 -192.74 -2.00 -13.06 16 22 C 0.22 5.31 8.46 133.84 1.13 6.44 16 23 N -0.57 -13.23 6.04 -183.87 -1.11 -14.34 16 24 H 0.44 8.78 8.54 -92.71 -0.79 7.99 16 25 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 26 H 0.13 4.07 8.14 -2.39 -0.02 4.05 16 27 H 0.13 4.07 8.14 -2.40 -0.02 4.05 16 28 H 0.12 2.59 8.13 -2.39 -0.02 2.57 16 29 H 0.12 2.59 8.13 -2.39 -0.02 2.57 16 30 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 31 H 0.19 0.20 8.06 -2.91 -0.02 0.18 16 32 H 0.20 0.93 8.06 -2.91 -0.02 0.91 16 Total: -1.00 -74.53 309.42 2.72 -71.81 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.39 Total: 12.23 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 6.47 Total: 5.43 kcal Atomic # 7 Polarization: -91.14 SS G_CDS: -4.85 Total: -96.00 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.15 Total: -29.44 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 16 Polarization: -6.93 SS G_CDS: -1.16 Total: -8.09 kcal Total: -74.53 2.72 -71.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726367111.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.188 kcal (2) G-P(sol) polarization free energy of solvation -74.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds