Wall clock time and date at job start Tue Mar 31 2020 06:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42104 * 110.54454 * 2 1 4 4 O 1.42099 * 110.54728 * 223.24963 * 2 1 3 5 5 C 1.76199 * 104.45068 * 111.62151 * 2 1 3 6 6 C 1.43203 * 120.00323 * 285.70364 * 5 2 1 7 7 N 3.77150 * 92.69465 * 76.98975 * 2 1 3 8 8 C 1.34816 * 119.99995 * 105.69718 * 5 2 1 9 9 C 1.47229 * 119.99934 * 349.23574 * 8 5 2 10 10 C 1.39893 * 120.13431 * 316.48647 * 9 8 5 11 11 C 1.37930 * 119.96116 * 179.78820 * 10 9 8 12 12 C 1.38287 * 120.24818 * 0.47135 * 11 10 9 13 13 C 1.39000 * 120.27205 * 359.78408 * 12 11 10 14 14 O 1.35762 * 119.98350 * 179.97438 * 13 12 11 15 15 C 1.34827 * 116.99827 * 174.39259 * 14 13 12 16 16 H 1.08000 * 120.00448 * 5.05357 * 15 14 13 17 17 C 1.38653 * 120.00015 * 185.05990 * 15 14 13 18 18 N 1.31566 * 120.00001 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00411 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47141 * 89.99630 * 19 17 15 21 21 H 1.48502 * 109.47397 * 210.00091 * 19 17 15 22 22 H 1.48504 * 109.46586 * 329.99641 * 19 17 15 23 23 C 1.38570 * 120.03149 * 359.97438 * 13 12 11 24 24 H 1.08996 * 109.47214 * 308.37947 * 1 2 3 25 25 H 1.09004 * 109.47109 * 68.37650 * 1 2 3 26 26 H 1.09000 * 109.47037 * 188.37504 * 1 2 3 27 27 H 1.08006 * 119.99934 * 169.23621 * 8 5 2 28 28 H 1.07997 * 120.01775 * 0.02562 * 10 9 8 29 29 H 1.08006 * 119.87903 * 180.23844 * 11 10 9 30 30 H 1.08003 * 119.86496 * 179.76650 * 12 11 10 31 31 H 0.96993 * 119.99614 * 179.97438 * 18 17 15 32 32 H 1.08005 * 120.12397 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 6 2.2537 -0.6287 1.5862 6 6 2.1073 0.1948 2.7486 7 7 1.9913 0.8481 3.6706 8 6 2.7278 -1.8851 1.7056 9 6 2.6580 -2.8100 0.5622 10 6 1.4948 -2.8838 -0.2114 11 6 1.4349 -3.7484 -1.2845 12 6 2.5178 -4.5509 -1.5938 13 6 3.6766 -4.4895 -0.8287 14 8 4.7361 -5.2803 -1.1373 15 6 5.8683 -5.0902 -0.4303 16 1 5.8792 -4.3934 0.3948 17 6 7.0188 -5.7890 -0.7627 18 7 7.0055 -6.6381 -1.7676 19 14 8.5877 -5.5251 0.2162 20 1 8.6311 -6.4836 1.3496 21 1 9.7633 -5.7455 -0.6638 22 1 8.6158 -4.1362 0.7411 23 6 3.7511 -3.6214 0.2489 24 1 -0.3633 0.6380 0.8056 25 1 -0.3633 0.3787 -0.9554 26 1 -0.3633 -1.0167 0.1497 27 1 3.1587 -2.2131 2.6400 28 1 0.6455 -2.2615 0.0291 29 1 0.5375 -3.8016 -1.8832 30 1 2.4628 -5.2283 -2.4331 31 1 7.8104 -7.1267 -2.0003 32 1 4.6506 -3.5728 0.8446 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727744356.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:25 Heat of formation + Delta-G solvation = 7.442601 kcal Electronic energy + Delta-G solvation = -20637.100005 eV Core-core repulsion = 17272.208889 eV Total energy + Delta-G solvation = -3364.891116 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.42738 -37.64588 -37.14539 -36.27986 -35.81860 -34.00589 -32.29189 -30.25988 -29.71587 -28.80051 -25.51163 -24.37311 -21.90740 -20.86410 -19.90247 -18.37050 -17.97052 -17.14506 -16.30931 -15.99996 -15.59397 -15.00168 -14.72041 -14.44137 -14.00123 -13.85171 -13.73738 -13.54346 -13.46182 -13.28932 -13.12657 -12.71034 -12.47620 -12.42695 -12.03711 -11.77785 -11.43093 -11.17099 -11.11302 -10.92450 -10.88188 -10.55474 -10.47813 -10.11358 -9.52568 -8.85777 -8.20588 -7.25332 -6.50335 -4.10312 -0.05663 0.29844 2.06998 2.25024 2.45225 2.87383 3.07224 3.10267 3.11962 3.15711 3.60406 3.84194 3.91639 4.14598 4.38881 4.54843 4.63130 4.87050 5.00584 5.11081 5.21782 5.25738 5.40269 5.56914 5.65521 5.95308 6.10198 6.48279 6.56510 6.78314 7.01471 7.03683 7.26688 7.36228 7.57930 7.91999 8.94885 9.62201 10.67299 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.020368 B = 0.004739 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.378285 B = 5906.582886 C = 6668.566857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.488 3.512 3 O -0.937 6.937 4 O -0.887 6.887 5 C -0.660 4.660 6 C 0.278 3.722 7 N -0.420 5.420 8 C 0.164 3.836 9 C -0.085 4.085 10 C -0.126 4.126 11 C -0.081 4.081 12 C -0.151 4.151 13 C 0.143 3.857 14 O -0.176 6.176 15 C -0.395 4.395 16 H 0.091 0.909 17 C 0.042 3.958 18 N -0.860 5.860 19 Si 0.939 3.061 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.267 1.267 23 C -0.177 4.177 24 H 0.127 0.873 25 H 0.135 0.865 26 H 0.138 0.862 27 H 0.143 0.857 28 H 0.098 0.902 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.271 0.729 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.655 7.603 3.044 15.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.664 3.336 3 O -0.934 6.934 4 O -0.883 6.883 5 C -0.748 4.748 6 C -0.037 4.037 7 N -0.097 5.097 8 C 0.141 3.859 9 C -0.087 4.087 10 C -0.146 4.146 11 C -0.100 4.100 12 C -0.171 4.171 13 C 0.089 3.911 14 O -0.079 6.079 15 C -0.471 4.471 16 H 0.109 0.891 17 C -0.163 4.163 18 N -0.495 5.495 19 Si 0.764 3.236 20 H -0.199 1.199 21 H -0.202 1.202 22 H -0.192 1.192 23 C -0.196 4.196 24 H 0.146 0.854 25 H 0.153 0.847 26 H 0.156 0.844 27 H 0.160 0.840 28 H 0.116 0.884 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.081 0.919 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.058 8.557 3.569 15.210 hybrid contribution 0.522 -0.269 0.965 1.130 sum -11.536 8.288 4.534 14.911 Atomic orbital electron populations 1.30395 1.26279 1.12191 1.11866 1.05912 0.78182 0.74681 0.74798 1.93581 1.77258 1.36691 1.85902 1.93950 1.76822 1.58030 1.59522 1.29331 1.27798 1.02745 1.14951 1.24625 0.93713 0.92951 0.92440 1.81222 1.09447 1.09089 1.09913 1.22722 0.77175 0.88267 0.97718 1.18471 0.96425 0.98225 0.95555 1.20499 0.95890 1.01037 0.97147 1.20368 0.97563 0.95843 0.96216 1.20423 0.92372 1.03078 1.01215 1.19147 0.89455 0.89914 0.92553 1.84014 1.17936 1.50092 1.55898 1.21267 0.85931 1.26570 1.13346 0.89147 1.25264 0.98543 0.95728 0.96779 1.70029 1.29375 1.24007 1.26056 0.85744 0.79951 0.79063 0.78887 1.19872 1.20181 1.19160 1.21145 0.98732 0.98930 1.00828 0.85388 0.84671 0.84353 0.83981 0.88446 0.86285 0.86059 0.91939 0.84839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -4.26 10.43 101.05 1.05 -3.21 16 2 S 2.49 28.77 5.01 -107.50 -0.54 28.23 16 3 O -0.94 -14.14 17.71 -57.54 -1.02 -15.16 16 4 O -0.89 -12.89 12.44 -57.54 -0.72 -13.61 16 5 C -0.66 -7.92 5.47 -38.87 -0.21 -8.14 16 6 C 0.28 3.75 15.14 -22.47 -0.34 3.41 16 7 N -0.42 -6.41 18.54 41.84 0.78 -5.63 16 8 C 0.16 2.00 9.41 -37.14 -0.35 1.65 16 9 C -0.09 -1.31 4.15 -105.08 -0.44 -1.74 16 10 C -0.13 -1.73 6.13 -39.08 -0.24 -1.97 16 11 C -0.08 -1.21 10.00 -39.68 -0.40 -1.61 16 12 C -0.15 -2.82 9.98 -39.28 -0.39 -3.21 16 13 C 0.14 3.13 6.64 -39.18 -0.26 2.87 16 14 O -0.18 -4.69 9.76 0.02 0.00 -4.69 16 15 C -0.40 -10.43 9.48 30.89 0.29 -10.14 16 16 H 0.09 2.17 5.20 -52.49 -0.27 1.90 16 17 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 18 N -0.86 -24.33 13.67 55.48 0.76 -23.57 16 19 Si 0.94 19.82 29.55 -169.99 -5.02 14.80 16 20 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 21 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 23 C -0.18 -3.38 8.91 -38.92 -0.35 -3.73 16 24 H 0.13 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.13 0.62 8.14 -51.92 -0.42 0.20 16 26 H 0.14 0.66 5.78 -51.92 -0.30 0.36 16 27 H 0.14 1.40 8.06 -52.48 -0.42 0.98 16 28 H 0.10 0.90 4.16 -52.49 -0.22 0.68 16 29 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 30 H 0.12 2.16 8.06 -52.48 -0.42 1.74 16 31 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.13 2.52 5.63 -52.48 -0.30 2.23 16 LS Contribution 298.77 15.07 4.50 4.50 Total: -1.00 -34.27 298.77 -5.32 -39.59 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -2.34 Total: 0.35 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: -1.72 Total: -24.81 kcal Atomic # 7 Polarization: -30.74 SS G_CDS: 1.53 Total: -29.21 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -1.73 Total: -33.45 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 16 Polarization: 28.77 SS G_CDS: -0.54 Total: 28.23 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -34.27 -5.32 -39.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727744356.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.032 kcal (2) G-P(sol) polarization free energy of solvation -34.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds