Wall clock time and date at job start Tue Mar 31 2020 06:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42104 * 110.54454 * 2 1 4 4 O 1.42099 * 110.54728 * 223.24963 * 2 1 3 5 5 C 1.76199 * 104.45068 * 111.62151 * 2 1 3 6 6 C 1.43203 * 120.00323 * 285.70364 * 5 2 1 7 7 N 3.77150 * 92.69465 * 76.98975 * 2 1 3 8 8 C 1.34816 * 119.99995 * 105.69718 * 5 2 1 9 9 C 1.47229 * 119.99934 * 349.23574 * 8 5 2 10 10 C 1.39893 * 120.13431 * 316.48647 * 9 8 5 11 11 C 1.37930 * 119.96116 * 179.78820 * 10 9 8 12 12 C 1.38287 * 120.24818 * 0.47135 * 11 10 9 13 13 C 1.39000 * 120.27205 * 359.78408 * 12 11 10 14 14 O 1.35762 * 119.98350 * 179.97438 * 13 12 11 15 15 C 1.34827 * 116.99827 * 174.39259 * 14 13 12 16 16 H 1.08000 * 120.00448 * 5.05357 * 15 14 13 17 17 C 1.38653 * 120.00015 * 185.05990 * 15 14 13 18 18 N 1.31566 * 120.00001 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00411 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47141 * 89.99630 * 19 17 15 21 21 H 1.48502 * 109.47397 * 210.00091 * 19 17 15 22 22 H 1.48504 * 109.46586 * 329.99641 * 19 17 15 23 23 C 1.38570 * 120.03149 * 359.97438 * 13 12 11 24 24 H 1.08996 * 109.47214 * 308.37947 * 1 2 3 25 25 H 1.09004 * 109.47109 * 68.37650 * 1 2 3 26 26 H 1.09000 * 109.47037 * 188.37504 * 1 2 3 27 27 H 1.08006 * 119.99934 * 169.23621 * 8 5 2 28 28 H 1.07997 * 120.01775 * 0.02562 * 10 9 8 29 29 H 1.08006 * 119.87903 * 180.23844 * 11 10 9 30 30 H 1.08003 * 119.86496 * 179.76650 * 12 11 10 31 31 H 0.96993 * 119.99614 * 179.97438 * 18 17 15 32 32 H 1.08005 * 120.12397 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 6 2.2537 -0.6287 1.5862 6 6 2.1073 0.1948 2.7486 7 7 1.9913 0.8481 3.6706 8 6 2.7278 -1.8851 1.7056 9 6 2.6580 -2.8100 0.5622 10 6 1.4948 -2.8838 -0.2114 11 6 1.4349 -3.7484 -1.2845 12 6 2.5178 -4.5509 -1.5938 13 6 3.6766 -4.4895 -0.8287 14 8 4.7361 -5.2803 -1.1373 15 6 5.8683 -5.0902 -0.4303 16 1 5.8792 -4.3934 0.3948 17 6 7.0188 -5.7890 -0.7627 18 7 7.0055 -6.6381 -1.7676 19 14 8.5877 -5.5251 0.2162 20 1 8.6311 -6.4836 1.3496 21 1 9.7633 -5.7455 -0.6638 22 1 8.6158 -4.1362 0.7411 23 6 3.7511 -3.6214 0.2489 24 1 -0.3633 0.6380 0.8056 25 1 -0.3633 0.3787 -0.9554 26 1 -0.3633 -1.0167 0.1497 27 1 3.1587 -2.2131 2.6400 28 1 0.6455 -2.2615 0.0291 29 1 0.5375 -3.8016 -1.8832 30 1 2.4628 -5.2283 -2.4331 31 1 7.8104 -7.1267 -2.0003 32 1 4.6506 -3.5728 0.8446 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727744356.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:24 Heat of formation + Delta-G solvation = -18.103843 kcal Electronic energy + Delta-G solvation = -20638.207782 eV Core-core repulsion = 17272.208889 eV Total energy + Delta-G solvation = -3365.998893 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.85797 -39.03703 -38.23381 -37.50877 -36.90287 -35.21334 -34.13809 -31.42396 -30.64892 -30.03122 -27.34218 -25.56554 -23.33517 -22.14992 -20.96972 -19.87568 -19.12610 -18.68634 -17.37909 -16.99481 -16.79709 -16.36657 -16.08218 -15.99987 -15.48067 -15.08162 -14.96038 -14.67558 -14.53777 -14.27026 -13.95831 -13.95359 -13.73335 -13.60530 -13.51861 -13.09082 -12.80628 -12.50566 -12.40924 -12.26487 -12.11822 -11.85437 -11.73262 -11.27731 -11.21457 -10.67859 -9.51997 -8.74709 -8.41916 -6.08965 -0.92292 -0.78448 0.76192 0.87846 1.37214 1.42970 1.45698 1.53244 1.86792 2.05007 2.20127 2.53030 2.87373 3.00272 3.18279 3.34656 3.59420 3.66279 3.92840 4.10381 4.16996 4.33273 4.37366 4.40699 4.58430 4.79606 5.00775 5.12393 5.16006 5.21239 5.51423 5.66863 5.72811 6.06885 6.21640 6.29078 7.03598 7.86393 8.81396 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.020368 B = 0.004739 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.378285 B = 5906.582886 C = 6668.566857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.626 4.626 2 S 2.476 3.524 3 O -0.981 6.981 4 O -0.926 6.926 5 C -0.644 4.644 6 C 0.294 3.706 7 N -0.448 5.448 8 C 0.164 3.836 9 C -0.083 4.083 10 C -0.102 4.102 11 C -0.075 4.075 12 C -0.168 4.168 13 C 0.098 3.902 14 O -0.234 6.234 15 C -0.409 4.409 16 H 0.102 0.898 17 C -0.022 4.022 18 N -0.921 5.921 19 Si 1.011 2.989 20 H -0.262 1.262 21 H -0.274 1.274 22 H -0.256 1.256 23 C -0.194 4.194 24 H 0.151 0.849 25 H 0.166 0.834 26 H 0.168 0.832 27 H 0.165 0.835 28 H 0.154 0.846 29 H 0.168 0.832 30 H 0.117 0.883 31 H 0.271 0.729 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.095 9.840 4.408 19.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.780 4.780 2 S 2.656 3.344 3 O -0.978 6.978 4 O -0.922 6.922 5 C -0.731 4.731 6 C -0.021 4.021 7 N -0.125 5.125 8 C 0.141 3.859 9 C -0.084 4.084 10 C -0.121 4.121 11 C -0.093 4.093 12 C -0.187 4.187 13 C 0.048 3.952 14 O -0.142 6.142 15 C -0.486 4.486 16 H 0.119 0.881 17 C -0.220 4.220 18 N -0.559 5.559 19 Si 0.831 3.169 20 H -0.187 1.187 21 H -0.199 1.199 22 H -0.180 1.180 23 C -0.213 4.213 24 H 0.169 0.831 25 H 0.184 0.816 26 H 0.186 0.814 27 H 0.182 0.818 28 H 0.171 0.829 29 H 0.185 0.815 30 H 0.135 0.865 31 H 0.080 0.920 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.499 10.827 4.966 19.547 hybrid contribution 1.128 -0.679 0.571 1.435 sum -14.371 10.148 5.537 18.444 Atomic orbital electron populations 1.30183 1.18119 1.14943 1.14794 1.06114 0.81253 0.73226 0.73792 1.93540 1.80096 1.38101 1.86058 1.93900 1.79508 1.58748 1.60076 1.29351 1.27019 1.02008 1.14678 1.24680 0.92922 0.92364 0.92095 1.81256 1.10379 1.10051 1.10861 1.22682 0.77588 0.87997 0.97653 1.18692 0.95798 0.97491 0.96401 1.21241 0.96610 0.99296 0.94958 1.20945 0.97675 0.94069 0.96652 1.20745 0.92753 1.04122 1.01086 1.19741 0.89521 0.91300 0.94631 1.83966 1.19195 1.53143 1.57885 1.21749 0.86610 1.26584 1.13612 0.88103 1.26459 1.01997 0.95499 0.98012 1.70175 1.30350 1.26482 1.28933 0.84685 0.75214 0.79540 0.77433 1.18710 1.19936 1.17958 1.21173 0.99971 0.99789 1.00393 0.83106 0.81576 0.81448 0.81760 0.82884 0.81470 0.86531 0.92032 0.85879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -3.54 10.43 113.37 1.18 -2.35 16 2 S 2.48 47.92 5.01 -56.49 -0.28 47.64 16 3 O -0.98 -27.50 17.71 -127.65 -2.26 -29.76 16 4 O -0.93 -24.23 12.44 -127.65 -1.59 -25.82 16 5 C -0.64 -13.19 5.47 22.73 0.12 -13.07 16 6 C 0.29 7.01 15.14 88.33 1.34 8.35 16 7 N -0.45 -12.55 18.54 19.00 0.35 -12.20 16 8 C 0.16 3.51 9.41 23.85 0.22 3.73 16 9 C -0.08 -2.35 4.15 -20.16 -0.08 -2.43 16 10 C -0.10 -2.35 6.13 22.60 0.14 -2.21 16 11 C -0.08 -1.99 10.00 22.21 0.22 -1.76 16 12 C -0.17 -6.32 9.98 22.46 0.22 -6.09 16 13 C 0.10 4.50 6.64 22.53 0.15 4.65 16 14 O -0.23 -13.53 9.76 -22.85 -0.22 -13.75 16 15 C -0.41 -23.08 9.48 67.92 0.64 -22.43 16 16 H 0.10 5.15 5.20 -2.91 -0.02 5.14 16 17 C -0.02 -1.25 5.49 84.83 0.47 -0.78 16 18 N -0.92 -55.74 13.67 21.61 0.30 -55.45 16 19 Si 1.01 42.43 29.55 68.60 2.03 44.45 16 20 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 21 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 23 C -0.19 -7.58 8.91 22.70 0.20 -7.38 16 24 H 0.15 0.45 8.14 -2.39 -0.02 0.43 16 25 H 0.17 0.21 8.14 -2.39 -0.02 0.19 16 26 H 0.17 0.06 5.78 -2.39 -0.01 0.05 16 27 H 0.17 2.79 8.06 -2.91 -0.02 2.77 16 28 H 0.15 1.71 4.16 -2.91 -0.01 1.70 16 29 H 0.17 2.80 8.06 -2.91 -0.02 2.77 16 30 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 31 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 32 H 0.12 4.90 5.63 -2.91 -0.02 4.88 16 Total: -1.00 -83.96 298.77 4.34 -79.63 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: 1.18 Total: 7.05 kcal Atomic # 6 Polarization: -46.63 SS G_CDS: 4.83 Total: -41.80 kcal Atomic # 7 Polarization: -68.30 SS G_CDS: 0.65 Total: -67.65 kcal Atomic # 8 Polarization: -65.25 SS G_CDS: -4.07 Total: -69.32 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 16 Polarization: 47.92 SS G_CDS: -0.28 Total: 47.64 kcal Total: -83.96 4.34 -79.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727744356.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.523 kcal (2) G-P(sol) polarization free energy of solvation -83.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds