Wall clock time and date at job start Tue Mar 31 2020 06:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42093 * 110.54686 * 2 1 4 4 O 1.42108 * 110.54125 * 223.24517 * 2 1 3 5 5 C 1.76198 * 104.45046 * 111.62693 * 2 1 3 6 6 C 1.43205 * 119.99464 * 294.99622 * 5 2 1 7 7 N 3.77142 * 87.71990 * 79.29028 * 2 1 3 8 8 C 1.34808 * 120.00727 * 114.99809 * 5 2 1 9 9 C 1.47220 * 120.00628 * 187.73630 * 8 5 2 10 10 C 1.39896 * 120.13960 * 215.73143 * 9 8 5 11 11 C 1.37933 * 119.96624 * 179.71670 * 10 9 8 12 12 C 1.38284 * 120.24532 * 0.55319 * 11 10 9 13 13 C 1.38995 * 120.27528 * 359.72537 * 12 11 10 14 14 O 1.35754 * 119.98777 * 179.97438 * 13 12 11 15 15 C 1.34837 * 117.00003 * 6.54070 * 14 13 12 16 16 H 1.08001 * 119.99866 * 354.86176 * 15 14 13 17 17 C 1.38657 * 120.00194 * 174.85657 * 15 14 13 18 18 N 1.31551 * 119.99626 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 119.99889 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47093 * 89.99842 * 19 17 15 21 21 H 1.48500 * 109.47039 * 209.99837 * 19 17 15 22 22 H 1.48497 * 109.47502 * 330.00064 * 19 17 15 23 23 C 1.38578 * 120.03140 * 359.97438 * 13 12 11 24 24 H 1.08999 * 109.46576 * 308.37609 * 1 2 3 25 25 H 1.08999 * 109.46889 * 68.37257 * 1 2 3 26 26 H 1.08999 * 109.47029 * 188.37736 * 1 2 3 27 27 H 1.08011 * 119.99783 * 7.45609 * 8 5 2 28 28 H 1.08000 * 120.01342 * 359.97438 * 10 9 8 29 29 H 1.07999 * 119.87726 * 180.25009 * 11 10 9 30 30 H 1.07997 * 119.86008 * 179.69238 * 12 11 10 31 31 H 0.97005 * 119.99266 * 180.02562 * 18 17 15 32 32 H 1.07996 * 120.12441 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3305 0.0000 4 8 2.3126 -0.9693 -0.9117 5 6 2.2537 -0.6289 1.5861 6 6 1.9248 0.1124 2.7665 7 7 1.6640 0.7003 3.7028 8 6 2.8997 -1.8076 1.6886 9 6 3.1163 -2.4159 3.0117 10 6 4.2951 -3.1212 3.2761 11 6 4.4969 -3.6846 4.5188 12 6 3.5327 -3.5650 5.5027 13 6 2.3551 -2.8714 5.2492 14 8 1.4122 -2.7579 6.2193 15 6 1.7348 -3.2213 7.4437 16 1 2.6735 -3.7327 7.5975 17 6 0.8614 -3.0412 8.5055 18 7 1.1765 -3.4928 9.7002 19 14 -0.7625 -2.1572 8.2394 20 1 -1.8086 -3.1442 7.8695 21 1 -1.1583 -1.4617 9.4903 22 1 -0.6117 -1.1629 7.1467 23 6 2.1432 -2.2955 4.0067 24 1 -0.3632 0.6380 0.8057 25 1 -0.3633 0.3788 -0.9553 26 1 -0.3633 -1.0167 0.1497 27 1 3.2543 -2.3082 0.7996 28 1 5.0486 -3.2210 2.5088 29 1 5.4093 -4.2254 4.7226 30 1 3.6950 -4.0128 6.4720 31 1 0.5653 -3.3671 10.4429 32 1 1.2286 -1.7566 3.8080 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727744357.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:27 Heat of formation + Delta-G solvation = -13.840286 kcal Electronic energy + Delta-G solvation = -20194.256994 eV Core-core repulsion = 16828.442983 eV Total energy + Delta-G solvation = -3365.814012 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.59487 -37.69124 -37.36468 -36.33205 -36.21687 -33.90797 -32.56486 -30.11553 -29.84587 -29.34129 -25.50792 -24.41755 -21.91705 -21.31889 -19.83329 -18.46518 -17.96148 -17.22570 -16.42433 -16.21418 -15.72030 -15.42477 -15.00387 -14.30428 -14.04822 -13.97561 -13.72442 -13.55781 -13.48838 -13.30165 -12.92977 -12.64962 -12.43376 -12.38846 -12.29516 -12.15832 -11.85119 -11.54379 -11.31625 -11.17903 -11.00036 -10.86062 -10.31006 -10.15879 -9.61322 -9.04296 -8.46210 -7.68160 -6.57594 -4.24804 -0.29371 0.28742 1.86928 2.01246 2.43017 2.99120 3.13448 3.16165 3.21449 3.32712 3.55640 3.72054 4.11373 4.12630 4.18587 4.38288 4.48182 4.72406 4.88269 4.96961 5.14700 5.23489 5.36072 5.45990 5.52234 5.76909 5.87964 6.16641 6.38617 6.63457 6.81012 6.97156 7.25301 7.56561 7.63930 7.83423 8.76349 9.34433 10.49106 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.020481 B = 0.004520 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.822103 B = 6193.837195 C = 7170.788952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 2.513 3.487 3 O -0.929 6.929 4 O -0.934 6.934 5 C -0.651 4.651 6 C 0.262 3.738 7 N -0.397 5.397 8 C 0.145 3.855 9 C -0.089 4.089 10 C -0.164 4.164 11 C -0.080 4.080 12 C -0.193 4.193 13 C 0.151 3.849 14 O -0.209 6.209 15 C -0.393 4.393 16 H 0.109 0.891 17 C 0.068 3.932 18 N -0.871 5.871 19 Si 0.903 3.097 20 H -0.271 1.271 21 H -0.279 1.279 22 H -0.258 1.258 23 C -0.147 4.147 24 H 0.132 0.868 25 H 0.135 0.865 26 H 0.137 0.863 27 H 0.172 0.828 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.139 0.861 31 H 0.282 0.718 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.304 1.867 -19.086 19.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.799 4.799 2 S 2.690 3.310 3 O -0.926 6.926 4 O -0.931 6.931 5 C -0.739 4.739 6 C -0.054 4.054 7 N -0.073 5.073 8 C 0.123 3.877 9 C -0.091 4.091 10 C -0.183 4.183 11 C -0.098 4.098 12 C -0.213 4.213 13 C 0.098 3.902 14 O -0.114 6.114 15 C -0.467 4.467 16 H 0.126 0.874 17 C -0.137 4.137 18 N -0.507 5.507 19 Si 0.728 3.272 20 H -0.197 1.197 21 H -0.205 1.205 22 H -0.182 1.182 23 C -0.166 4.166 24 H 0.151 0.849 25 H 0.154 0.846 26 H 0.156 0.844 27 H 0.189 0.811 28 H 0.140 0.860 29 H 0.138 0.862 30 H 0.157 0.843 31 H 0.092 0.908 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.151 3.116 -18.002 18.270 hybrid contribution -0.951 -0.352 0.691 1.227 sum -0.799 2.764 -17.311 17.549 Atomic orbital electron populations 1.30189 1.24991 1.12649 1.12071 1.05013 0.78080 0.74694 0.73191 1.93615 1.77166 1.36307 1.85530 1.93594 1.77885 1.61921 1.59654 1.29541 1.22515 1.07095 1.14719 1.24462 0.94744 0.93439 0.92733 1.81323 1.07817 1.10029 1.08132 1.22923 0.78679 0.87610 0.98519 1.18610 0.96550 1.01586 0.92352 1.20830 0.97244 1.02074 0.98121 1.20798 0.98290 0.98036 0.92690 1.21566 0.94710 1.03635 1.01379 1.18887 0.88569 0.93692 0.89009 1.83594 1.36624 1.72460 1.18707 1.20780 1.07607 1.36837 0.81525 0.87421 1.24469 0.99373 0.96358 0.93512 1.69634 1.37498 1.43725 0.99887 0.86210 0.81978 0.80492 0.78544 1.19678 1.20486 1.18170 1.20458 1.00822 1.03780 0.91554 0.84891 0.84644 0.84400 0.81129 0.86042 0.86155 0.84299 0.90758 0.86044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.43 10.80 101.05 1.09 -2.34 16 2 S 2.51 22.05 5.77 -107.50 -0.62 21.43 16 3 O -0.93 -11.71 17.85 -57.54 -1.03 -12.74 16 4 O -0.93 -9.31 16.71 -57.54 -0.96 -10.27 16 5 C -0.65 -7.61 5.53 -38.87 -0.21 -7.83 16 6 C 0.26 4.15 11.71 -22.47 -0.26 3.89 16 7 N -0.40 -7.55 18.28 41.84 0.76 -6.78 16 8 C 0.15 1.64 9.31 -37.15 -0.35 1.30 16 9 C -0.09 -1.36 5.44 -105.08 -0.57 -1.94 16 10 C -0.16 -2.34 9.79 -39.07 -0.38 -2.72 16 11 C -0.08 -1.27 10.02 -39.68 -0.40 -1.67 16 12 C -0.19 -3.86 9.16 -39.28 -0.36 -4.22 16 13 C 0.15 3.34 6.64 -39.18 -0.26 3.08 16 14 O -0.21 -5.40 8.58 0.02 0.00 -5.40 16 15 C -0.39 -10.76 9.95 30.89 0.31 -10.45 16 16 H 0.11 2.97 5.43 -52.49 -0.29 2.68 16 17 C 0.07 1.86 5.49 -17.52 -0.10 1.77 16 18 N -0.87 -24.58 13.96 55.48 0.77 -23.80 16 19 Si 0.90 21.54 28.62 -169.99 -4.86 16.67 16 20 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.26 -6.33 7.11 56.52 0.40 -5.93 16 23 C -0.15 -2.78 8.20 -38.91 -0.32 -3.10 16 24 H 0.13 0.72 8.14 -51.92 -0.42 0.29 16 25 H 0.14 0.42 8.14 -51.92 -0.42 0.00 16 26 H 0.14 0.51 8.14 -51.92 -0.42 0.08 16 27 H 0.17 1.29 7.17 -52.48 -0.38 0.92 16 28 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 29 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 30 H 0.14 2.90 5.63 -52.49 -0.30 2.60 16 31 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.12 2.27 6.18 -52.49 -0.32 1.94 16 LS Contribution 306.39 15.07 4.62 4.62 Total: -1.00 -35.13 306.39 -5.66 -40.79 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -2.53 Total: -0.29 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: -1.81 Total: -24.22 kcal Atomic # 7 Polarization: -32.12 SS G_CDS: 1.54 Total: -30.58 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -1.99 Total: -28.42 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.86 Total: 16.67 kcal Atomic # 16 Polarization: 22.05 SS G_CDS: -0.62 Total: 21.43 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -35.13 -5.66 -40.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727744357.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.949 kcal (2) G-P(sol) polarization free energy of solvation -35.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds