Wall clock time and date at job start Tue Mar 31 2020 06:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42093 * 110.54686 * 2 1 4 4 O 1.42108 * 110.54125 * 223.24517 * 2 1 3 5 5 C 1.76198 * 104.45046 * 111.62693 * 2 1 3 6 6 C 1.43205 * 119.99464 * 294.99622 * 5 2 1 7 7 N 3.77142 * 87.71990 * 79.29028 * 2 1 3 8 8 C 1.34808 * 120.00727 * 114.99809 * 5 2 1 9 9 C 1.47220 * 120.00628 * 187.73630 * 8 5 2 10 10 C 1.39896 * 120.13960 * 215.73143 * 9 8 5 11 11 C 1.37933 * 119.96624 * 179.71670 * 10 9 8 12 12 C 1.38284 * 120.24532 * 0.55319 * 11 10 9 13 13 C 1.38995 * 120.27528 * 359.72537 * 12 11 10 14 14 O 1.35754 * 119.98777 * 179.97438 * 13 12 11 15 15 C 1.34837 * 117.00003 * 6.54070 * 14 13 12 16 16 H 1.08001 * 119.99866 * 354.86176 * 15 14 13 17 17 C 1.38657 * 120.00194 * 174.85657 * 15 14 13 18 18 N 1.31551 * 119.99626 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 119.99889 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47093 * 89.99842 * 19 17 15 21 21 H 1.48500 * 109.47039 * 209.99837 * 19 17 15 22 22 H 1.48497 * 109.47502 * 330.00064 * 19 17 15 23 23 C 1.38578 * 120.03140 * 359.97438 * 13 12 11 24 24 H 1.08999 * 109.46576 * 308.37609 * 1 2 3 25 25 H 1.08999 * 109.46889 * 68.37257 * 1 2 3 26 26 H 1.08999 * 109.47029 * 188.37736 * 1 2 3 27 27 H 1.08011 * 119.99783 * 7.45609 * 8 5 2 28 28 H 1.08000 * 120.01342 * 359.97438 * 10 9 8 29 29 H 1.07999 * 119.87726 * 180.25009 * 11 10 9 30 30 H 1.07997 * 119.86008 * 179.69238 * 12 11 10 31 31 H 0.97005 * 119.99266 * 180.02562 * 18 17 15 32 32 H 1.07996 * 120.12441 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3305 0.0000 4 8 2.3126 -0.9693 -0.9117 5 6 2.2537 -0.6289 1.5861 6 6 1.9248 0.1124 2.7665 7 7 1.6640 0.7003 3.7028 8 6 2.8997 -1.8076 1.6886 9 6 3.1163 -2.4159 3.0117 10 6 4.2951 -3.1212 3.2761 11 6 4.4969 -3.6846 4.5188 12 6 3.5327 -3.5650 5.5027 13 6 2.3551 -2.8714 5.2492 14 8 1.4122 -2.7579 6.2193 15 6 1.7348 -3.2213 7.4437 16 1 2.6735 -3.7327 7.5975 17 6 0.8614 -3.0412 8.5055 18 7 1.1765 -3.4928 9.7002 19 14 -0.7625 -2.1572 8.2394 20 1 -1.8086 -3.1442 7.8695 21 1 -1.1583 -1.4617 9.4903 22 1 -0.6117 -1.1629 7.1467 23 6 2.1432 -2.2955 4.0067 24 1 -0.3632 0.6380 0.8057 25 1 -0.3633 0.3788 -0.9553 26 1 -0.3633 -1.0167 0.1497 27 1 3.2543 -2.3082 0.7996 28 1 5.0486 -3.2210 2.5088 29 1 5.4093 -4.2254 4.7226 30 1 3.6950 -4.0128 6.4720 31 1 0.5653 -3.3671 10.4429 32 1 1.2286 -1.7566 3.8080 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727744357.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:26 Heat of formation + Delta-G solvation = -40.546821 kcal Electronic energy + Delta-G solvation = -20195.415076 eV Core-core repulsion = 16828.442983 eV Total energy + Delta-G solvation = -3366.972094 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.13214 -39.15417 -38.17356 -37.72510 -37.02280 -35.13385 -34.53265 -31.49008 -30.85798 -30.23602 -27.37535 -25.67896 -23.31650 -22.69453 -20.89305 -19.87733 -19.41029 -18.53418 -17.29154 -17.11980 -17.02596 -16.68874 -16.39240 -15.95739 -15.71880 -15.31070 -15.00696 -14.70029 -14.39241 -14.29452 -14.24075 -13.93743 -13.88415 -13.57723 -13.31732 -13.14280 -13.04023 -12.93234 -12.77131 -12.57755 -12.28218 -12.09167 -11.84138 -11.48366 -11.30612 -10.98359 -9.83121 -9.25392 -8.59845 -6.32534 -1.03472 -0.73255 0.47391 0.64925 1.21461 1.25582 1.41474 1.52812 1.89642 2.05731 2.18109 2.57775 2.62930 2.84940 2.96108 3.00092 3.43095 3.66670 3.87199 4.11159 4.15720 4.16935 4.28966 4.39237 4.41959 4.49975 4.84180 4.94796 5.01935 5.21995 5.34700 5.51439 5.60855 5.75860 6.02509 6.40924 6.74510 7.46733 8.51445 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.020481 B = 0.004520 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.822103 B = 6193.837195 C = 7170.788952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.633 4.633 2 S 2.533 3.467 3 O -0.970 6.970 4 O -0.939 6.939 5 C -0.650 4.650 6 C 0.280 3.720 7 N -0.463 5.463 8 C 0.156 3.844 9 C -0.088 4.088 10 C -0.130 4.130 11 C -0.078 4.078 12 C -0.210 4.210 13 C 0.110 3.890 14 O -0.247 6.247 15 C -0.401 4.401 16 H 0.088 0.912 17 C 0.016 3.984 18 N -0.916 5.916 19 Si 0.962 3.038 20 H -0.258 1.258 21 H -0.266 1.266 22 H -0.275 1.275 23 C -0.160 4.160 24 H 0.133 0.867 25 H 0.166 0.834 26 H 0.162 0.838 27 H 0.223 0.777 28 H 0.180 0.820 29 H 0.158 0.842 30 H 0.116 0.884 31 H 0.286 0.714 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.834 1.627 -23.622 23.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.787 4.787 2 S 2.709 3.291 3 O -0.967 6.967 4 O -0.936 6.936 5 C -0.735 4.735 6 C -0.035 4.035 7 N -0.140 5.140 8 C 0.134 3.866 9 C -0.090 4.090 10 C -0.148 4.148 11 C -0.096 4.096 12 C -0.230 4.230 13 C 0.061 3.939 14 O -0.155 6.155 15 C -0.477 4.477 16 H 0.105 0.895 17 C -0.183 4.183 18 N -0.556 5.556 19 Si 0.784 3.216 20 H -0.183 1.183 21 H -0.190 1.190 22 H -0.201 1.201 23 C -0.180 4.180 24 H 0.152 0.848 25 H 0.184 0.816 26 H 0.180 0.820 27 H 0.240 0.760 28 H 0.197 0.803 29 H 0.175 0.825 30 H 0.134 0.866 31 H 0.096 0.904 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.752 2.857 -22.549 22.742 hybrid contribution -0.893 -0.268 1.657 1.902 sum -0.141 2.589 -20.892 21.053 Atomic orbital electron populations 1.30098 1.19929 1.14655 1.13972 1.04693 0.79674 0.73236 0.71453 1.93572 1.79466 1.38198 1.85492 1.93578 1.79437 1.61750 1.58793 1.30169 1.21924 1.06959 1.14409 1.25175 0.93163 0.92420 0.92724 1.81347 1.10046 1.12302 1.10313 1.23269 0.78080 0.87356 0.97867 1.19069 0.95814 1.00867 0.93223 1.21559 0.97136 0.97907 0.98228 1.21252 0.98306 0.97760 0.92283 1.21648 0.95479 1.03956 1.01870 1.19482 0.89367 0.95523 0.89525 1.83539 1.38428 1.74946 1.18562 1.20728 1.07111 1.36929 0.82902 0.89475 1.25171 1.02374 0.97403 0.93355 1.69705 1.38983 1.46341 1.00608 0.85350 0.78853 0.79248 0.78109 1.18271 1.19018 1.20057 1.20634 1.01985 1.03935 0.91439 0.84812 0.81571 0.81951 0.76036 0.80293 0.82467 0.86631 0.90420 0.86587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -3.87 10.80 113.37 1.22 -2.65 16 2 S 2.53 35.15 5.77 -56.49 -0.33 34.82 16 3 O -0.97 -22.29 17.85 -127.65 -2.28 -24.57 16 4 O -0.94 -14.21 16.71 -127.65 -2.13 -16.34 16 5 C -0.65 -13.11 5.53 22.73 0.13 -12.98 16 6 C 0.28 8.60 11.71 88.33 1.03 9.63 16 7 N -0.46 -17.94 18.28 19.00 0.35 -17.60 16 8 C 0.16 2.76 9.31 23.84 0.22 2.99 16 9 C -0.09 -2.39 5.44 -20.16 -0.11 -2.50 16 10 C -0.13 -3.05 9.79 22.60 0.22 -2.82 16 11 C -0.08 -2.27 10.02 22.21 0.22 -2.04 16 12 C -0.21 -8.60 9.16 22.46 0.21 -8.39 16 13 C 0.11 5.07 6.64 22.53 0.15 5.21 16 14 O -0.25 -13.60 8.58 -22.86 -0.20 -13.79 16 15 C -0.40 -23.59 9.95 67.92 0.68 -22.91 16 16 H 0.09 5.27 5.43 -2.91 -0.02 5.25 16 17 C 0.02 0.95 5.49 84.83 0.47 1.42 16 18 N -0.92 -54.62 13.96 21.61 0.30 -54.32 16 19 Si 0.96 46.63 28.62 68.60 1.96 48.60 16 20 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 22 H -0.28 -13.95 7.11 99.48 0.71 -13.25 16 23 C -0.16 -6.04 8.20 22.70 0.19 -5.85 16 24 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.17 0.14 8.14 -2.39 -0.02 0.12 16 26 H 0.16 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.22 1.74 7.17 -2.91 -0.02 1.72 16 28 H 0.18 2.31 8.06 -2.91 -0.02 2.28 16 29 H 0.16 3.41 8.06 -2.91 -0.02 3.38 16 30 H 0.12 5.21 5.63 -2.91 -0.02 5.19 16 31 H 0.29 15.66 8.31 -92.70 -0.77 14.89 16 32 H 0.12 4.40 6.18 -2.91 -0.02 4.38 16 Total: -1.00 -84.74 306.39 3.48 -81.26 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: 1.17 Total: 2.84 kcal Atomic # 6 Polarization: -45.52 SS G_CDS: 4.62 Total: -40.90 kcal Atomic # 7 Polarization: -72.57 SS G_CDS: 0.65 Total: -71.92 kcal Atomic # 8 Polarization: -50.10 SS G_CDS: -4.61 Total: -54.70 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 1.96 Total: 48.60 kcal Atomic # 16 Polarization: 35.15 SS G_CDS: -0.33 Total: 34.82 kcal Total: -84.74 3.48 -81.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727744357.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.718 kcal (2) G-P(sol) polarization free energy of solvation -84.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds