Wall clock time and date at job start Tue Mar 31 2020 06:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35789 * 117.00200 * 2 1 4 4 C 1.38029 * 123.47297 * 0.22103 * 3 2 1 5 5 C 1.33607 * 115.08760 * 180.29148 * 4 3 2 6 6 S 1.70583 * 111.14722 * 359.72835 * 5 4 3 7 7 C 1.37272 * 123.47447 * 180.02562 * 3 2 1 8 8 C 1.41725 * 125.47308 * 359.97438 * 7 3 2 9 9 O 1.21785 * 119.99978 * 359.71974 * 8 7 3 10 10 N 1.34781 * 119.99557 * 179.44868 * 8 7 3 11 11 C 1.40555 * 119.99387 * 180.02562 * 10 8 7 12 12 C 1.40660 * 126.08623 * 0.02562 * 11 10 8 13 13 N 1.30909 * 108.38725 * 180.02562 * 12 11 10 14 14 N 1.40062 * 108.41376 * 359.97438 * 13 12 11 15 15 C 1.37317 * 126.07345 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00073 * 179.97438 * 15 14 13 17 17 C 1.38987 * 119.99785 * 359.97438 * 15 14 13 18 18 N 1.31302 * 119.99706 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 119.99921 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47107 * 60.00605 * 19 17 15 21 21 H 1.48505 * 109.47246 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47388 * 300.00208 * 19 17 15 23 23 C 1.35687 * 126.08138 * 179.71509 * 11 10 8 24 24 H 1.08998 * 109.47552 * 59.99272 * 1 2 3 25 25 H 1.08996 * 109.47484 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46796 * 299.99742 * 1 2 3 27 27 H 1.08001 * 122.45286 * 0.02562 * 4 3 2 28 28 H 1.08004 * 124.43143 * 179.76630 * 5 4 3 29 29 H 0.96995 * 119.99923 * 359.97438 * 10 8 7 30 30 H 1.07998 * 125.80181 * 359.97438 * 12 11 10 31 31 H 0.96997 * 119.99784 * 180.02562 * 18 17 15 32 32 H 1.08001 * 126.24279 * 359.97438 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 1.3653 2.4109 0.0044 5 6 2.1390 3.5002 -0.0025 6 16 3.7924 3.0806 -0.0076 7 6 3.4095 1.3646 -0.0005 8 6 4.3568 0.3105 -0.0006 9 8 3.9794 -0.8474 0.0050 10 7 5.6754 0.5895 -0.0123 11 6 6.6148 -0.4559 -0.0130 12 6 6.3232 -1.8319 -0.0027 13 7 7.4527 -2.4935 -0.0064 14 7 8.5061 -1.5705 -0.0198 15 6 9.8456 -1.8723 -0.0278 16 1 10.5780 -1.0786 -0.0384 17 6 10.2590 -3.1993 -0.0222 18 7 9.3685 -4.1642 -0.0098 19 14 12.0812 -3.6099 -0.0338 20 1 12.7274 -3.0279 1.1699 21 1 12.2563 -5.0846 -0.0260 22 1 12.7084 -3.0439 -1.2550 23 6 7.9645 -0.3174 -0.0295 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2867 2.4661 0.0087 28 1 1.7664 4.5139 -0.0039 29 1 5.9759 1.5117 -0.0211 30 1 5.3353 -2.2683 0.0075 31 1 9.6570 -5.0902 -0.0055 32 1 8.5106 0.6142 -0.0450 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729972132.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:16 Heat of formation + Delta-G solvation = 57.615979 kcal Electronic energy + Delta-G solvation = -20139.255924 eV Core-core repulsion = 16808.833240 eV Total energy + Delta-G solvation = -3330.422684 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.24373 -39.56390 -38.20706 -36.00532 -34.06471 -33.07323 -30.54959 -29.96863 -27.91095 -26.85071 -25.12500 -24.36706 -21.68117 -20.73424 -19.70137 -19.30453 -18.43860 -17.26744 -16.80636 -15.92827 -15.75886 -15.38544 -14.98934 -14.84977 -14.44624 -14.05896 -13.82457 -13.22192 -13.21481 -12.81811 -12.69430 -12.61488 -11.69190 -11.59312 -11.34612 -11.20574 -11.19312 -11.09177 -10.88995 -10.51260 -10.05926 -9.12106 -9.08546 -8.90500 -8.72287 -8.15772 -7.96483 -6.58782 -6.48825 -4.14808 0.46411 1.35785 1.68199 2.29069 3.01058 3.08935 3.12977 3.43745 3.45295 3.74016 3.89357 3.97626 4.51444 4.56747 4.85023 4.95316 4.99421 5.03145 5.08967 5.32673 5.37550 5.55894 5.65027 6.00906 6.33057 6.56241 6.98273 7.05688 7.21154 7.24813 7.33430 7.93524 8.28721 8.37043 8.72456 8.97959 9.46036 9.75781 10.47220 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.035653 B = 0.003418 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.149286 B = 8190.639810 C = 8960.613755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.268 6.268 3 C 0.176 3.824 4 C -0.209 4.209 5 C -0.207 4.207 6 S 0.219 5.781 7 C -0.303 4.303 8 C 0.576 3.424 9 O -0.516 6.516 10 N -0.625 5.625 11 C -0.054 4.054 12 C -0.031 4.031 13 N -0.260 5.260 14 N -0.144 5.144 15 C -0.323 4.323 16 H 0.115 0.885 17 C 0.046 3.954 18 N -0.771 5.771 19 Si 0.934 3.066 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.267 1.267 23 C -0.085 4.085 24 H 0.054 0.946 25 H 0.102 0.898 26 H 0.054 0.946 27 H 0.148 0.852 28 H 0.172 0.828 29 H 0.391 0.609 30 H 0.177 0.823 31 H 0.275 0.725 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.324 15.543 -0.023 20.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.179 6.179 3 C 0.116 3.884 4 C -0.243 4.243 5 C -0.345 4.345 6 S 0.484 5.516 7 C -0.423 4.423 8 C 0.363 3.637 9 O -0.394 6.394 10 N -0.268 5.268 11 C -0.160 4.160 12 C -0.207 4.207 13 N -0.091 5.091 14 N 0.089 4.911 15 C -0.456 4.456 16 H 0.133 0.867 17 C -0.171 4.171 18 N -0.397 5.397 19 Si 0.758 3.242 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.192 1.192 23 C -0.236 4.236 24 H 0.072 0.928 25 H 0.121 0.879 26 H 0.072 0.928 27 H 0.166 0.834 28 H 0.189 0.811 29 H 0.224 0.776 30 H 0.194 0.806 31 H 0.085 0.915 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.644 13.907 -0.019 18.138 hybrid contribution -1.171 0.743 -0.006 1.386 sum -12.815 14.650 -0.025 19.463 Atomic orbital electron populations 1.23157 0.78738 1.04350 1.00966 1.86385 1.20492 1.23946 1.87124 1.18252 0.90252 0.85447 0.94426 1.20030 1.01923 0.91012 1.11345 1.24961 0.99193 1.03549 1.06799 1.83005 1.03566 0.96212 1.68855 1.22882 0.95542 0.97868 1.25994 1.15380 0.81221 0.87710 0.79359 1.90766 1.78962 1.19680 1.50000 1.42414 1.04476 1.07768 1.72127 1.17248 0.87331 0.88128 1.23301 1.24138 0.98568 0.90174 1.07811 1.78243 0.91692 1.13478 1.25708 1.44525 1.05444 1.01844 1.39325 1.19810 0.78252 0.93973 1.53536 0.86714 1.25632 1.00612 0.95284 0.95570 1.70217 1.33906 1.00185 1.35408 0.85904 0.80727 0.78121 0.79412 1.19202 1.20182 1.19208 1.21241 0.91872 0.90299 1.20174 0.92785 0.87913 0.92779 0.83436 0.81088 0.77650 0.80617 0.91474 0.83724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.94 101.05 1.00 1.22 16 2 O -0.27 -4.14 9.36 -36.60 -0.34 -4.48 16 3 C 0.18 2.54 6.70 -40.01 -0.27 2.27 16 4 C -0.21 -2.13 9.17 -41.28 -0.38 -2.51 16 5 C -0.21 -1.80 10.90 29.11 0.32 -1.49 16 6 S 0.22 2.31 22.00 -107.50 -2.37 -0.06 16 7 C -0.30 -4.79 6.28 -38.60 -0.24 -5.03 16 8 C 0.58 11.70 7.57 -14.93 -0.11 11.59 16 9 O -0.52 -12.47 12.98 -12.40 -0.16 -12.63 16 10 N -0.62 -12.43 5.45 -12.57 -0.07 -12.49 16 11 C -0.05 -1.34 6.90 -83.85 -0.58 -1.92 16 12 C -0.03 -0.87 10.85 -17.03 -0.18 -1.05 16 13 N -0.26 -7.84 10.39 30.80 0.32 -7.52 16 14 N -0.14 -4.07 3.74 -11.41 -0.04 -4.11 16 15 C -0.32 -8.78 10.25 -14.82 -0.15 -8.93 16 16 H 0.12 2.76 7.83 -52.49 -0.41 2.35 16 17 C 0.05 1.22 5.50 -17.50 -0.10 1.12 16 18 N -0.77 -22.04 11.81 55.50 0.66 -21.38 16 19 Si 0.93 19.30 29.55 -169.99 -5.02 14.28 16 20 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 21 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 23 C -0.08 -2.09 11.49 -16.38 -0.19 -2.28 16 24 H 0.05 0.40 7.89 -51.93 -0.41 -0.01 16 25 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.05 0.40 7.87 -51.93 -0.41 -0.01 16 27 H 0.15 1.08 6.99 -52.49 -0.37 0.71 16 28 H 0.17 0.91 8.06 -52.48 -0.42 0.48 16 29 H 0.39 6.22 7.79 -40.82 -0.32 5.90 16 30 H 0.18 4.89 5.91 -52.49 -0.31 4.58 16 31 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.15 2.95 8.06 -52.49 -0.42 2.53 16 LS Contribution 299.02 15.07 4.51 4.51 Total: -1.00 -36.21 299.02 -6.03 -42.24 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -2.63 Total: 8.65 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -0.88 Total: -6.99 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.86 Total: -45.51 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.50 Total: -17.11 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -2.37 Total: -0.06 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -36.21 -6.03 -42.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729972132.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.857 kcal (2) G-P(sol) polarization free energy of solvation -36.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds