Wall clock time and date at job start Tue Mar 31 2020 06:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35789 * 117.00200 * 2 1 4 4 C 1.38029 * 123.47297 * 0.22103 * 3 2 1 5 5 C 1.33607 * 115.08760 * 180.29148 * 4 3 2 6 6 S 1.70583 * 111.14722 * 359.72835 * 5 4 3 7 7 C 1.37272 * 123.47447 * 180.02562 * 3 2 1 8 8 C 1.41725 * 125.47308 * 359.97438 * 7 3 2 9 9 O 1.21785 * 119.99978 * 359.71974 * 8 7 3 10 10 N 1.34781 * 119.99557 * 179.44868 * 8 7 3 11 11 C 1.40555 * 119.99387 * 180.02562 * 10 8 7 12 12 C 1.40660 * 126.08623 * 0.02562 * 11 10 8 13 13 N 1.30909 * 108.38725 * 180.02562 * 12 11 10 14 14 N 1.40062 * 108.41376 * 359.97438 * 13 12 11 15 15 C 1.37317 * 126.07345 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00073 * 179.97438 * 15 14 13 17 17 C 1.38987 * 119.99785 * 359.97438 * 15 14 13 18 18 N 1.31302 * 119.99706 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 119.99921 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47107 * 60.00605 * 19 17 15 21 21 H 1.48505 * 109.47246 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47388 * 300.00208 * 19 17 15 23 23 C 1.35687 * 126.08138 * 179.71509 * 11 10 8 24 24 H 1.08998 * 109.47552 * 59.99272 * 1 2 3 25 25 H 1.08996 * 109.47484 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46796 * 299.99742 * 1 2 3 27 27 H 1.08001 * 122.45286 * 0.02562 * 4 3 2 28 28 H 1.08004 * 124.43143 * 179.76630 * 5 4 3 29 29 H 0.96995 * 119.99923 * 359.97438 * 10 8 7 30 30 H 1.07998 * 125.80181 * 359.97438 * 12 11 10 31 31 H 0.96997 * 119.99784 * 180.02562 * 18 17 15 32 32 H 1.08001 * 126.24279 * 359.97438 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 1.3653 2.4109 0.0044 5 6 2.1390 3.5002 -0.0025 6 16 3.7924 3.0806 -0.0076 7 6 3.4095 1.3646 -0.0005 8 6 4.3568 0.3105 -0.0006 9 8 3.9794 -0.8474 0.0050 10 7 5.6754 0.5895 -0.0123 11 6 6.6148 -0.4559 -0.0130 12 6 6.3232 -1.8319 -0.0027 13 7 7.4527 -2.4935 -0.0064 14 7 8.5061 -1.5705 -0.0198 15 6 9.8456 -1.8723 -0.0278 16 1 10.5780 -1.0786 -0.0384 17 6 10.2590 -3.1993 -0.0222 18 7 9.3685 -4.1642 -0.0098 19 14 12.0812 -3.6099 -0.0338 20 1 12.7274 -3.0279 1.1699 21 1 12.2563 -5.0846 -0.0260 22 1 12.7084 -3.0439 -1.2550 23 6 7.9645 -0.3174 -0.0295 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2867 2.4661 0.0087 28 1 1.7664 4.5139 -0.0039 29 1 5.9759 1.5117 -0.0211 30 1 5.3353 -2.2683 0.0075 31 1 9.6570 -5.0902 -0.0055 32 1 8.5106 0.6142 -0.0450 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729972132.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:16 Heat of formation + Delta-G solvation = 31.138253 kcal Electronic energy + Delta-G solvation = -20140.404084 eV Core-core repulsion = 16808.833240 eV Total energy + Delta-G solvation = -3331.570845 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.77516 -41.04797 -39.79323 -36.93418 -35.88764 -34.96251 -32.33152 -31.39587 -29.56414 -27.93523 -26.77409 -25.61754 -23.13648 -22.62152 -21.31543 -20.55060 -19.89020 -19.01873 -17.89767 -17.41693 -16.93916 -16.91772 -16.60443 -15.99092 -15.94386 -15.54925 -15.07362 -14.86290 -14.71093 -14.55669 -13.71594 -13.51285 -13.42335 -13.28598 -12.85754 -12.85562 -12.49749 -12.12304 -12.00280 -11.91135 -11.83571 -10.99490 -10.86068 -10.74385 -10.09920 -9.85378 -9.06219 -8.50221 -8.45619 -6.23031 -0.48860 0.45467 0.86134 1.24277 1.40589 1.40611 1.57741 1.75945 2.07888 2.10980 2.35701 2.55330 2.66406 2.96023 3.10347 3.75426 4.11130 4.25209 4.31656 4.39631 4.44190 4.60658 4.66292 4.72464 4.89140 5.00324 5.03916 5.21766 5.29628 5.46147 5.96348 6.30322 6.34199 6.71632 6.75258 7.39105 7.47574 7.68074 8.53846 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.035653 B = 0.003418 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.149286 B = 8190.639810 C = 8960.613755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.313 6.313 3 C 0.181 3.819 4 C -0.223 4.223 5 C -0.170 4.170 6 S 0.264 5.736 7 C -0.373 4.373 8 C 0.575 3.425 9 O -0.570 6.570 10 N -0.620 5.620 11 C -0.043 4.043 12 C -0.060 4.060 13 N -0.308 5.308 14 N -0.166 5.166 15 C -0.355 4.355 16 H 0.143 0.857 17 C -0.008 4.008 18 N -0.826 5.826 19 Si 1.023 2.977 20 H -0.252 1.252 21 H -0.278 1.278 22 H -0.252 1.252 23 C -0.082 4.082 24 H 0.076 0.924 25 H 0.106 0.894 26 H 0.076 0.924 27 H 0.181 0.819 28 H 0.219 0.781 29 H 0.411 0.589 30 H 0.163 0.837 31 H 0.276 0.724 32 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.436 19.490 -0.048 23.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.225 6.225 3 C 0.119 3.881 4 C -0.255 4.255 5 C -0.308 4.308 6 S 0.529 5.471 7 C -0.492 4.492 8 C 0.366 3.634 9 O -0.452 6.452 10 N -0.265 5.265 11 C -0.149 4.149 12 C -0.235 4.235 13 N -0.141 5.141 14 N 0.065 4.935 15 C -0.486 4.486 16 H 0.160 0.840 17 C -0.219 4.219 18 N -0.454 5.454 19 Si 0.841 3.159 20 H -0.176 1.176 21 H -0.203 1.203 22 H -0.176 1.176 23 C -0.232 4.232 24 H 0.094 0.906 25 H 0.125 0.875 26 H 0.094 0.906 27 H 0.198 0.802 28 H 0.236 0.764 29 H 0.247 0.753 30 H 0.180 0.820 31 H 0.086 0.914 32 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -11.786 17.926 -0.044 21.454 hybrid contribution -1.387 -0.305 0.002 1.420 sum -13.173 17.621 -0.042 22.001 Atomic orbital electron populations 1.23478 0.75963 1.05497 1.03086 1.86323 1.23667 1.25663 1.86826 1.18804 0.90244 0.86551 0.92493 1.20221 1.03621 0.89383 1.12292 1.25600 0.97871 1.05267 1.02063 1.82760 1.04737 0.91512 1.68108 1.22685 0.95342 1.00068 1.31127 1.16061 0.81601 0.88323 0.77400 1.90723 1.79793 1.22378 1.52258 1.42316 1.03933 1.07699 1.72586 1.17353 0.88380 0.88096 1.21106 1.24105 0.97737 0.92136 1.09558 1.78136 0.92869 1.15477 1.27591 1.44845 1.05714 1.02657 1.40284 1.20638 0.78401 0.95505 1.54071 0.83966 1.26941 1.06297 0.94639 0.94057 1.70414 1.36979 1.00748 1.37209 0.84612 0.73365 0.77611 0.80326 1.17612 1.20326 1.17628 1.21961 0.92019 0.90817 1.18388 0.90564 0.87516 0.90555 0.80162 0.76400 0.75254 0.81968 0.91388 0.79288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 9.94 113.37 1.13 1.37 16 2 O -0.31 -9.80 9.36 -74.44 -0.70 -10.50 16 3 C 0.18 5.05 6.70 21.99 0.15 5.19 16 4 C -0.22 -3.70 9.17 21.17 0.19 -3.51 16 5 C -0.17 -2.10 10.90 66.77 0.73 -1.37 16 6 S 0.26 4.77 22.00 -56.49 -1.24 3.53 16 7 C -0.37 -11.69 6.28 22.90 0.14 -11.55 16 8 C 0.57 24.29 7.57 85.10 0.64 24.93 16 9 O -0.57 -29.53 12.98 12.13 0.16 -29.38 16 10 N -0.62 -25.05 5.45 -311.84 -1.70 -26.75 16 11 C -0.04 -2.18 6.90 37.74 0.26 -1.92 16 12 C -0.06 -3.58 10.85 85.42 0.93 -2.66 16 13 N -0.31 -19.67 10.39 -56.46 -0.59 -20.25 16 14 N -0.17 -9.66 3.74 -190.00 -0.71 -10.37 16 15 C -0.36 -19.41 10.25 84.01 0.86 -18.55 16 16 H 0.14 6.67 7.83 -2.91 -0.02 6.65 16 17 C -0.01 -0.42 5.50 84.95 0.47 0.05 16 18 N -0.83 -49.22 11.81 21.66 0.26 -48.97 16 19 Si 1.02 39.49 29.55 68.60 2.03 41.52 16 20 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 21 H -0.28 -10.66 7.11 99.48 0.71 -9.95 16 22 H -0.25 -9.07 7.11 99.48 0.71 -8.36 16 23 C -0.08 -4.02 11.49 83.37 0.96 -3.06 16 24 H 0.08 0.96 7.89 -2.39 -0.02 0.95 16 25 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.08 0.97 7.87 -2.39 -0.02 0.95 16 27 H 0.18 1.74 6.99 -2.91 -0.02 1.72 16 28 H 0.22 0.68 8.06 -2.91 -0.02 0.66 16 29 H 0.41 12.75 7.79 -92.71 -0.72 12.03 16 30 H 0.16 9.89 5.91 -2.91 -0.02 9.87 16 31 H 0.28 15.16 8.31 -92.71 -0.77 14.39 16 32 H 0.19 7.31 8.06 -2.91 -0.02 7.28 16 Total: -1.00 -87.15 299.02 4.43 -82.73 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: 0.46 Total: 29.51 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 6.46 Total: -11.07 kcal Atomic # 7 Polarization: -103.60 SS G_CDS: -2.74 Total: -106.34 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -0.54 Total: -39.88 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Atomic # 16 Polarization: 4.77 SS G_CDS: -1.24 Total: 3.53 kcal Total: -87.15 4.43 -82.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729972132.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.868 kcal (2) G-P(sol) polarization free energy of solvation -87.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds