Wall clock time and date at job start Tue Mar 31 2020 06:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35230 * 107.86620 * 179.86985 * 11 10 9 13 13 C 1.40421 * 107.86833 * 0.39274 * 12 11 10 14 14 N 1.40084 * 125.97955 * 179.72179 * 13 12 11 15 15 C 1.34777 * 119.99834 * 0.02562 * 14 13 12 16 16 O 1.21734 * 119.99930 * 359.97438 * 15 14 13 17 17 C 1.46512 * 120.00203 * 179.97438 * 15 14 13 18 18 C 1.36758 * 125.43008 * 179.97438 * 17 15 14 19 19 C 1.37728 * 113.25558 * 179.97438 * 18 17 15 20 20 O 1.36208 * 122.50076 * 179.97438 * 19 18 17 21 21 C 1.34089 * 114.99880 * 0.02562 * 19 18 17 22 22 S 1.70597 * 110.97627 * 359.74675 * 21 19 18 23 23 N 1.31237 * 108.04634 * 359.75856 * 13 12 11 24 24 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 26 26 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 27 27 H 1.08000 * 126.06298 * 0.02562 * 11 10 9 28 28 H 1.08001 * 126.06304 * 180.12500 * 12 11 10 29 29 H 0.96998 * 120.00165 * 180.02562 * 14 13 12 30 30 H 1.07994 * 123.37093 * 0.02562 * 18 17 15 31 31 H 0.96702 * 113.99374 * 90.00125 * 20 19 18 32 32 H 1.07997 * 124.51007 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2630 -5.4436 0.5307 13 6 3.8671 -4.9130 -0.6205 14 7 4.9606 -5.4613 -1.3032 15 6 5.5271 -6.6020 -0.8624 16 8 5.0889 -7.1556 0.1293 17 6 6.6704 -7.1759 -1.5767 18 6 7.3281 -8.3232 -1.2284 19 6 8.3681 -8.6327 -2.0766 20 8 9.1497 -9.7349 -1.9045 21 6 8.5546 -7.7674 -3.0838 22 16 7.4112 -6.5028 -3.0221 23 7 3.2287 -3.8132 -0.9445 24 1 -0.4850 -0.8400 0.0004 25 1 0.6281 -2.5591 0.8866 26 1 0.6207 -2.5548 -0.8933 27 1 1.5908 -4.7507 1.7300 28 1 3.5587 -6.3457 1.0458 29 1 5.3100 -5.0200 -2.0932 30 1 7.0585 -8.9266 -0.3742 31 1 8.8235 -10.5232 -2.3599 32 1 9.3232 -7.8612 -3.8367 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000735520840.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:42 Heat of formation + Delta-G solvation = 41.951167 kcal Electronic energy + Delta-G solvation = -19587.069742 eV Core-core repulsion = 16255.967781 eV Total energy + Delta-G solvation = -3331.101961 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.86059 -39.83193 -39.02576 -35.54478 -34.92928 -33.72694 -31.16375 -29.76083 -29.44505 -26.57659 -25.30221 -23.20628 -22.25162 -20.95592 -20.05316 -19.82104 -18.61194 -17.64707 -17.22376 -16.91116 -16.16151 -15.73410 -15.48917 -14.99467 -14.41407 -14.04878 -13.89699 -13.80222 -13.46438 -13.22726 -12.76056 -12.50156 -12.26923 -11.88744 -11.65462 -11.21464 -11.16446 -10.84681 -10.57242 -10.22552 -10.17555 -9.82893 -9.33057 -9.03832 -8.81572 -8.60454 -8.28499 -7.60159 -6.60520 -4.34814 0.05534 1.00191 1.39659 1.80418 2.49327 2.55713 2.91571 3.36785 3.38225 3.56730 3.62535 3.65352 3.99695 4.39120 4.48941 4.65389 4.92079 5.13160 5.27840 5.41176 5.60755 5.67850 5.78046 6.07008 6.33711 6.42215 6.53546 6.70920 7.14440 7.20058 7.37521 7.64847 7.77746 8.00567 8.31101 8.46524 8.58461 9.33421 10.77167 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.029123 B = 0.003058 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.202839 B = 9154.551768 C = 9853.610950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.023 3.977 3 Si 1.077 2.923 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.609 4.609 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.315 5.315 11 C 0.053 3.947 12 C -0.283 4.283 13 C 0.258 3.742 14 N -0.625 5.625 15 C 0.597 3.403 16 O -0.502 6.502 17 C -0.251 4.251 18 C -0.074 4.074 19 C 0.079 3.921 20 O -0.481 6.481 21 C -0.269 4.269 22 S 0.245 5.755 23 N -0.298 5.298 24 H 0.267 0.733 25 H 0.047 0.953 26 H 0.036 0.964 27 H 0.170 0.830 28 H 0.162 0.838 29 H 0.408 0.592 30 H 0.162 0.838 31 H 0.390 0.610 32 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.555 -16.917 -6.417 23.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.181 4.181 3 Si 0.904 3.096 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.647 4.647 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.097 5.097 11 C -0.097 4.097 12 C -0.314 4.314 13 C 0.005 3.995 14 N -0.272 5.272 15 C 0.382 3.618 16 O -0.377 6.377 17 C -0.372 4.372 18 C -0.108 4.108 19 C 0.022 3.978 20 O -0.291 6.291 21 C -0.408 4.408 22 S 0.511 5.489 23 N -0.129 5.129 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.053 0.947 27 H 0.187 0.813 28 H 0.180 0.820 29 H 0.244 0.756 30 H 0.180 0.820 31 H 0.245 0.755 32 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 13.948 -12.942 -7.096 20.308 hybrid contribution 0.594 -3.768 0.673 3.873 sum 14.542 -16.710 -6.423 23.064 Atomic orbital electron populations 1.70855 1.06780 1.30440 1.45880 1.25928 0.96304 1.02817 0.93090 0.83420 0.74816 0.74539 0.76873 1.20507 1.21214 1.21104 1.22102 0.95399 0.90416 1.56809 0.91808 1.19789 0.86280 0.82778 0.98080 1.48819 1.23239 1.19520 1.18102 1.22576 1.00404 0.90038 0.96690 1.21531 1.02142 1.06350 1.01401 1.18992 0.91335 0.94419 0.94759 1.42190 1.30170 1.24595 1.30195 1.16709 0.81459 0.79772 0.83830 1.90790 1.61911 1.60240 1.24765 1.24249 1.04982 1.03632 1.04354 1.20901 0.93367 0.95813 1.00684 1.16987 0.93964 0.91809 0.95088 1.84962 1.49362 1.19212 1.75533 1.25555 1.07641 1.02396 1.05158 1.83209 1.20879 1.23666 1.21140 1.77366 1.03473 1.15993 1.16067 0.92266 0.93523 0.94673 0.81306 0.82027 0.75616 0.82003 0.75528 0.80646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.16 13.65 55.43 0.76 -25.40 16 2 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 3 Si 1.08 24.75 29.90 -169.99 -5.08 19.67 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.61 -17.01 9.24 -34.44 -0.32 -17.33 16 8 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 9 C 0.25 6.23 5.57 -5.19 -0.03 6.21 16 10 N -0.32 -7.30 3.67 -62.56 -0.23 -7.53 16 11 C 0.05 1.04 11.43 -17.24 -0.20 0.84 16 12 C -0.28 -5.56 9.60 -39.83 -0.38 -5.95 16 13 C 0.26 5.19 8.11 -154.44 -1.25 3.93 16 14 N -0.62 -9.92 5.44 -12.36 -0.07 -9.99 16 15 C 0.60 8.95 7.75 -12.93 -0.10 8.85 16 16 O -0.50 -8.84 13.96 5.16 0.07 -8.77 16 17 C -0.25 -2.87 6.45 -36.78 -0.24 -3.11 16 18 C -0.07 -0.77 10.00 -40.30 -0.40 -1.17 16 19 C 0.08 0.71 6.68 -41.23 -0.28 0.43 16 20 O -0.48 -3.75 13.62 -20.40 -0.28 -4.03 16 21 C -0.27 -2.06 10.89 29.27 0.32 -1.74 16 22 S 0.24 2.02 22.14 -107.50 -2.38 -0.36 16 23 N -0.30 -6.86 12.42 31.43 0.39 -6.47 16 24 H 0.27 7.54 7.22 -40.82 -0.29 7.25 16 25 H 0.05 1.13 7.94 -51.93 -0.41 0.71 16 26 H 0.04 0.92 8.00 -51.93 -0.42 0.50 16 27 H 0.17 2.69 8.06 -52.49 -0.42 2.27 16 28 H 0.16 3.05 5.90 -52.49 -0.31 2.74 16 29 H 0.41 5.42 7.93 -40.82 -0.32 5.10 16 30 H 0.16 1.65 8.06 -52.49 -0.42 1.22 16 31 H 0.39 1.11 9.07 45.56 0.41 1.52 16 32 H 0.18 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 305.36 15.07 4.60 4.60 Total: -1.00 -34.29 305.36 -7.01 -41.29 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -1.82 Total: 5.48 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -2.97 Total: -8.49 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: 0.85 Total: -49.39 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -0.21 Total: -12.79 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -5.08 Total: 19.67 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.38 Total: -0.36 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.29 -7.01 -41.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735520840.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.245 kcal (2) G-P(sol) polarization free energy of solvation -34.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds