Wall clock time and date at job start Tue Mar 31 2020 06:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35230 * 107.86620 * 179.86985 * 11 10 9 13 13 C 1.40421 * 107.86833 * 0.39274 * 12 11 10 14 14 N 1.40084 * 125.97955 * 179.72179 * 13 12 11 15 15 C 1.34777 * 119.99834 * 0.02562 * 14 13 12 16 16 O 1.21734 * 119.99930 * 359.97438 * 15 14 13 17 17 C 1.46512 * 120.00203 * 179.97438 * 15 14 13 18 18 C 1.36758 * 125.43008 * 179.97438 * 17 15 14 19 19 C 1.37728 * 113.25558 * 179.97438 * 18 17 15 20 20 O 1.36208 * 122.50076 * 179.97438 * 19 18 17 21 21 C 1.34089 * 114.99880 * 0.02562 * 19 18 17 22 22 S 1.70597 * 110.97627 * 359.74675 * 21 19 18 23 23 N 1.31237 * 108.04634 * 359.75856 * 13 12 11 24 24 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 26 26 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 27 27 H 1.08000 * 126.06298 * 0.02562 * 11 10 9 28 28 H 1.08001 * 126.06304 * 180.12500 * 12 11 10 29 29 H 0.96998 * 120.00165 * 180.02562 * 14 13 12 30 30 H 1.07994 * 123.37093 * 0.02562 * 18 17 15 31 31 H 0.96702 * 113.99374 * 90.00125 * 20 19 18 32 32 H 1.07997 * 124.51007 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2630 -5.4436 0.5307 13 6 3.8671 -4.9130 -0.6205 14 7 4.9606 -5.4613 -1.3032 15 6 5.5271 -6.6020 -0.8624 16 8 5.0889 -7.1556 0.1293 17 6 6.6704 -7.1759 -1.5767 18 6 7.3281 -8.3232 -1.2284 19 6 8.3681 -8.6327 -2.0766 20 8 9.1497 -9.7349 -1.9045 21 6 8.5546 -7.7674 -3.0838 22 16 7.4112 -6.5028 -3.0221 23 7 3.2287 -3.8132 -0.9445 24 1 -0.4850 -0.8400 0.0004 25 1 0.6281 -2.5591 0.8866 26 1 0.6207 -2.5548 -0.8933 27 1 1.5908 -4.7507 1.7300 28 1 3.5587 -6.3457 1.0458 29 1 5.3100 -5.0200 -2.0932 30 1 7.0585 -8.9266 -0.3742 31 1 8.8235 -10.5232 -2.3599 32 1 9.3232 -7.8612 -3.8367 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735520840.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:41 Heat of formation + Delta-G solvation = 16.920817 kcal Electronic energy + Delta-G solvation = -19588.155140 eV Core-core repulsion = 16255.967781 eV Total energy + Delta-G solvation = -3332.187359 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.37823 -40.90780 -39.94215 -36.57844 -36.12018 -35.60716 -32.87298 -31.10302 -30.63857 -28.29547 -26.43398 -24.98900 -23.42488 -22.40201 -21.46305 -20.75399 -19.60448 -19.24331 -18.39642 -18.23811 -17.21062 -17.03135 -16.76737 -16.18106 -15.90933 -15.63459 -15.35452 -14.97655 -14.55285 -14.27839 -14.16713 -13.97797 -13.74115 -13.39949 -13.23740 -12.61859 -12.35978 -12.13312 -11.95245 -11.80173 -11.75451 -11.21846 -11.02932 -10.69621 -10.09765 -9.90071 -9.48231 -9.25811 -8.78467 -6.56327 -0.74157 0.28000 0.70342 0.84238 1.12723 1.19110 1.51709 1.57897 1.63255 1.79548 2.16035 2.21151 2.49010 3.01065 3.25253 3.60563 3.85142 3.98990 4.08776 4.23540 4.51146 4.54599 4.66210 4.76867 4.78229 4.99409 5.00591 5.08766 5.53907 5.72804 5.89251 6.04052 6.24785 6.40258 6.75283 6.77229 6.89318 7.19249 8.58395 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.029123 B = 0.003058 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.202839 B = 9154.551768 C = 9853.610950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.018 4.018 3 Si 1.119 2.881 4 H -0.275 1.275 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.623 4.623 8 H 0.046 0.954 9 C 0.259 3.741 10 N -0.341 5.341 11 C 0.059 3.941 12 C -0.290 4.290 13 C 0.266 3.734 14 N -0.621 5.621 15 C 0.600 3.400 16 O -0.534 6.534 17 C -0.288 4.288 18 C -0.068 4.068 19 C 0.068 3.932 20 O -0.490 6.490 21 C -0.250 4.250 22 S 0.288 5.712 23 N -0.341 5.341 24 H 0.261 0.739 25 H 0.056 0.944 26 H 0.019 0.981 27 H 0.205 0.795 28 H 0.171 0.829 29 H 0.420 0.580 30 H 0.157 0.843 31 H 0.411 0.589 32 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.545 -17.529 -7.157 25.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.218 4.218 3 Si 0.940 3.060 4 H -0.200 1.200 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.661 4.661 8 H 0.064 0.936 9 C 0.140 3.860 10 N -0.123 5.123 11 C -0.089 4.089 12 C -0.320 4.320 13 C 0.012 3.988 14 N -0.270 5.270 15 C 0.388 3.612 16 O -0.411 6.411 17 C -0.409 4.409 18 C -0.103 4.103 19 C 0.011 3.989 20 O -0.303 6.303 21 C -0.389 4.389 22 S 0.555 5.445 23 N -0.171 5.171 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.036 0.964 27 H 0.222 0.778 28 H 0.188 0.812 29 H 0.257 0.743 30 H 0.174 0.826 31 H 0.269 0.731 32 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 15.955 -13.600 -7.862 22.390 hybrid contribution 0.105 -3.771 0.840 3.864 sum 16.060 -17.370 -7.021 24.677 Atomic orbital electron populations 1.70948 1.07457 1.30214 1.47291 1.27266 0.96426 1.06049 0.92042 0.82887 0.74153 0.71122 0.77835 1.20012 1.19688 1.19966 1.22292 0.94723 0.92120 1.56945 0.93600 1.19458 0.86366 0.82683 0.97533 1.48611 1.23899 1.20181 1.19566 1.23205 1.00484 0.88588 0.96631 1.21740 1.02194 1.06634 1.01471 1.19327 0.91468 0.93383 0.94660 1.42295 1.29235 1.24994 1.30453 1.17192 0.81714 0.78848 0.83439 1.90750 1.63146 1.60930 1.26310 1.23894 1.05174 1.05054 1.06729 1.21025 0.93476 0.95198 1.00629 1.16901 0.93912 0.92771 0.95282 1.84925 1.49303 1.19877 1.76168 1.25939 1.07152 1.01044 1.04744 1.83101 1.19963 1.22931 1.18524 1.77280 1.04674 1.17842 1.17340 0.92926 0.92648 0.96366 0.77819 0.81169 0.74297 0.82561 0.73114 0.77819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.72 13.65 21.45 0.29 -53.43 16 2 C -0.02 -1.01 5.46 84.65 0.46 -0.54 16 3 Si 1.12 49.41 29.90 68.60 2.05 51.46 16 4 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 7 C -0.62 -35.29 9.24 25.60 0.24 -35.05 16 8 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 9 C 0.26 13.23 5.57 85.64 0.48 13.70 16 10 N -0.34 -15.97 3.67 -351.85 -1.29 -17.26 16 11 C 0.06 2.31 11.43 83.52 0.95 3.27 16 12 C -0.29 -11.32 9.60 22.11 0.21 -11.11 16 13 C 0.27 10.75 8.11 133.35 1.08 11.83 16 14 N -0.62 -19.62 5.44 -311.22 -1.69 -21.31 16 15 C 0.60 17.83 7.75 86.40 0.67 18.50 16 16 O -0.53 -18.89 13.96 -4.46 -0.06 -18.95 16 17 C -0.29 -6.27 6.45 24.08 0.16 -6.11 16 18 C -0.07 -1.34 10.00 21.80 0.22 -1.12 16 19 C 0.07 1.05 6.68 21.20 0.14 1.19 16 20 O -0.49 -6.37 13.62 -95.93 -1.31 -7.67 16 21 C -0.25 -2.99 10.89 66.87 0.73 -2.26 16 22 S 0.29 4.06 22.14 -56.49 -1.25 2.81 16 23 N -0.34 -15.93 12.42 -54.48 -0.68 -16.61 16 24 H 0.26 15.00 7.22 -92.71 -0.67 14.33 16 25 H 0.06 2.70 7.94 -2.39 -0.02 2.69 16 26 H 0.02 0.99 8.00 -2.39 -0.02 0.97 16 27 H 0.21 6.19 8.06 -2.91 -0.02 6.17 16 28 H 0.17 6.38 5.90 -2.91 -0.02 6.36 16 29 H 0.42 10.95 7.93 -92.71 -0.74 10.22 16 30 H 0.16 3.13 8.06 -2.91 -0.02 3.10 16 31 H 0.41 1.23 9.07 -74.06 -0.67 0.56 16 32 H 0.20 1.27 8.06 -2.91 -0.02 1.24 16 Total: -1.00 -74.20 305.36 1.30 -72.91 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -0.10 Total: 15.77 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: 5.34 Total: -7.70 kcal Atomic # 7 Polarization: -105.24 SS G_CDS: -3.37 Total: -108.61 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -1.37 Total: -26.63 kcal Atomic # 14 Polarization: 49.41 SS G_CDS: 2.05 Total: 51.46 kcal Atomic # 16 Polarization: 4.06 SS G_CDS: -1.25 Total: 2.81 kcal Total: -74.20 1.30 -72.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735520840.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.829 kcal (2) G-P(sol) polarization free energy of solvation -74.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds