Wall clock time and date at job start Tue Mar 31 2020 06:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86805 * 119.99721 * 2 1 4 4 H 1.48503 * 109.46932 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47179 * 299.99838 * 3 2 1 6 6 H 1.48495 * 109.47349 * 60.00242 * 3 2 1 7 7 C 1.38819 * 120.00392 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99970 * 184.82791 * 7 2 1 9 9 O 1.34846 * 119.99535 * 4.82348 * 7 2 1 10 10 C 1.34819 * 116.99251 * 174.89500 * 9 7 2 11 11 O 1.21584 * 120.00680 * 5.13636 * 10 9 7 12 12 C 1.46928 * 119.99520 * 185.12858 * 10 9 7 13 13 C 1.38217 * 127.31089 * 176.23260 * 12 10 9 14 14 N 1.33286 * 106.18545 * 180.26317 * 13 12 10 15 15 N 1.28469 * 109.58139 * 0.02562 * 14 13 12 16 16 N 1.28687 * 110.93438 * 0.02562 * 15 14 13 17 17 C 1.40091 * 126.03659 * 179.97438 * 16 15 14 18 18 C 1.38861 * 120.07372 * 125.84008 * 17 16 15 19 19 C 1.38110 * 119.94092 * 179.74383 * 18 17 16 20 20 C 1.38312 * 120.09235 * 0.53241 * 19 18 17 21 21 C 1.38251 * 120.14985 * 359.74776 * 20 19 18 22 22 C 1.38242 * 120.05987 * 359.96997 * 21 20 19 23 23 Cl 1.73598 * 120.04909 * 180.02562 * 22 21 20 24 24 H 0.96998 * 120.00135 * 359.97438 * 1 2 3 25 25 H 1.08002 * 126.90724 * 0.29163 * 13 12 10 26 26 H 1.07997 * 120.02993 * 0.02694 * 18 17 16 27 27 H 1.08002 * 119.95230 * 180.25479 * 19 18 17 28 28 H 1.07998 * 119.92079 * 179.76112 * 20 19 18 29 29 H 1.08006 * 119.96822 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0082 -1.2022 -0.0005 8 1 3.0853 -1.2038 0.0782 9 8 1.3376 -2.3678 -0.0993 10 6 2.0754 -3.4916 -0.2005 11 8 3.2863 -3.4346 -0.1063 12 6 1.4162 -4.7855 -0.4247 13 6 2.0227 -6.0116 -0.6224 14 7 1.0357 -6.8920 -0.7873 15 7 -0.0963 -6.2903 -0.7043 16 7 0.0665 -5.0320 -0.4896 17 6 -0.9528 -4.0817 -0.3465 18 6 -0.9926 -3.2678 0.7779 19 6 -1.9957 -2.3283 0.9137 20 6 -2.9668 -2.2044 -0.0634 21 6 -2.9342 -3.0167 -1.1817 22 6 -1.9297 -3.9553 -1.3267 23 17 -1.8886 -4.9746 -2.7313 24 1 -0.4850 0.8400 0.0004 25 1 3.0832 -6.2154 -0.6394 26 1 -0.2372 -3.3664 1.5434 27 1 -2.0244 -1.6924 1.7862 28 1 -3.7521 -1.4714 0.0474 29 1 -3.6942 -2.9178 -1.9427 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744709873.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:00 Heat of formation + Delta-G solvation = 52.570684 kcal Electronic energy + Delta-G solvation = -21200.889188 eV Core-core repulsion = 17732.370922 eV Total energy + Delta-G solvation = -3468.518266 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.035 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.98502 -39.10944 -38.93296 -36.26669 -35.45217 -34.37047 -32.38639 -31.05386 -30.46579 -29.62323 -25.99703 -24.23603 -23.30140 -22.60735 -21.40646 -20.21561 -18.45122 -17.94839 -16.64154 -16.41628 -16.22393 -15.12408 -14.91607 -14.67229 -14.49485 -14.34120 -13.81418 -13.56909 -13.30435 -12.85702 -11.94695 -11.87123 -11.67434 -11.47118 -11.36414 -11.25335 -10.95456 -10.78990 -10.68907 -10.55694 -10.27917 -10.07958 -9.47563 -9.03251 -8.79819 -8.62057 -8.41396 -6.67114 -4.29003 0.89595 1.47045 1.62896 2.18073 2.52307 2.67203 3.00646 3.06640 3.12470 3.60932 3.73660 3.85629 4.21749 4.75569 4.87072 4.93686 5.15224 5.32867 5.40378 5.46241 5.56390 5.77310 5.98969 6.25874 6.28467 6.37856 6.50702 6.66170 6.81565 7.09908 7.17409 7.66584 8.38679 8.67601 8.81377 9.51250 10.47375 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.015321 B = 0.007824 C = 0.005831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.087469 B = 3577.852000 C = 4800.984695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.050 3.950 3 Si 0.942 3.058 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.376 4.376 8 H 0.099 0.901 9 O -0.196 6.196 10 C 0.456 3.544 11 O -0.532 6.532 12 C -0.013 4.013 13 C 0.008 3.992 14 N -0.274 5.274 15 N -0.057 5.057 16 N -0.221 5.221 17 C 0.118 3.882 18 C -0.039 4.039 19 C -0.056 4.056 20 C -0.081 4.081 21 C -0.108 4.108 22 C -0.016 4.016 23 Cl -0.059 7.059 24 H 0.271 0.729 25 H 0.202 0.798 26 H 0.133 0.867 27 H 0.136 0.864 28 H 0.133 0.867 29 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.418 -2.312 0.372 7.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.157 4.157 3 Si 0.766 3.234 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.452 4.452 8 H 0.117 0.883 9 O -0.102 6.102 10 C 0.302 3.698 11 O -0.427 6.427 12 C -0.143 4.143 13 C -0.150 4.150 14 N -0.137 5.137 15 N -0.036 5.036 16 N -0.014 5.014 17 C 0.027 3.973 18 C -0.059 4.059 19 C -0.075 4.075 20 C -0.100 4.100 21 C -0.128 4.128 22 C -0.045 4.045 23 Cl -0.030 7.030 24 H 0.081 0.919 25 H 0.219 0.781 26 H 0.151 0.849 27 H 0.154 0.846 28 H 0.151 0.849 29 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.272 -3.365 0.075 8.931 hybrid contribution 1.350 1.725 -0.109 2.193 sum -6.922 -1.640 -0.034 7.114 Atomic orbital electron populations 1.69963 1.05776 1.27820 1.44121 1.25311 0.95937 0.98642 0.95775 0.85618 0.79730 0.79817 0.78208 1.18881 1.20075 1.20095 1.21390 0.93075 0.79478 1.51263 0.88293 1.83986 1.38662 1.13635 1.73921 1.19124 0.85467 0.83612 0.81615 1.90717 1.13992 1.86342 1.51676 1.22164 0.82526 0.96810 1.12820 1.23944 1.00907 0.86891 1.03283 1.74837 0.94728 1.26586 1.17593 1.78270 1.19951 0.88352 1.17064 1.44698 1.05115 1.06768 1.44814 1.17126 0.89611 0.93599 0.96930 1.20832 0.97315 0.93138 0.94618 1.20855 0.92287 0.94869 0.99516 1.21139 0.98804 0.97282 0.92770 1.20815 0.97608 0.95109 0.99231 1.20683 0.97695 0.96804 0.89274 1.98375 1.98160 1.67083 1.39351 0.91916 0.78093 0.84933 0.84646 0.84866 0.84525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.23 13.42 55.49 0.74 -19.49 15 2 C 0.05 1.22 5.50 -17.52 -0.10 1.13 15 3 Si 0.94 19.17 29.55 -169.99 -5.02 14.14 15 4 H -0.26 -5.46 7.11 56.52 0.40 -5.06 15 5 H -0.28 -5.54 7.11 56.52 0.40 -5.13 15 6 H -0.28 -5.43 7.11 56.52 0.40 -5.02 15 7 C -0.38 -9.94 9.64 30.95 0.30 -9.64 15 8 H 0.10 2.70 6.88 -52.49 -0.36 2.34 15 9 O -0.20 -5.02 6.43 -21.85 -0.14 -5.16 15 10 C 0.46 11.11 7.78 34.25 0.27 11.38 15 11 O -0.53 -13.83 16.20 -19.33 -0.31 -14.14 15 12 C -0.01 -0.28 6.88 -81.88 -0.56 -0.85 15 13 C 0.01 0.16 11.94 -16.93 -0.20 -0.04 15 14 N -0.27 -5.33 12.34 30.71 0.38 -4.95 15 15 N -0.06 -1.14 11.93 60.35 0.72 -0.42 15 16 N -0.22 -4.48 3.12 -6.97 -0.02 -4.50 15 17 C 0.12 2.26 5.53 -83.58 -0.46 1.80 15 18 C -0.04 -0.71 7.49 -39.40 -0.29 -1.00 15 19 C -0.06 -0.90 9.78 -39.60 -0.39 -1.28 15 20 C -0.08 -1.14 10.04 -39.55 -0.40 -1.54 15 21 C -0.11 -1.59 9.82 -39.58 -0.39 -1.98 15 22 C -0.02 -0.28 6.33 -39.31 -0.25 -0.53 15 23 Cl -0.06 -0.99 27.53 -51.86 -1.43 -2.42 15 24 H 0.27 6.03 8.31 -40.82 -0.34 5.69 15 25 H 0.20 3.19 8.06 -52.49 -0.42 2.76 15 26 H 0.13 2.51 7.78 -52.49 -0.41 2.11 15 27 H 0.14 1.95 8.06 -52.49 -0.42 1.52 15 28 H 0.13 1.44 8.06 -52.49 -0.42 1.02 15 29 H 0.14 1.62 8.06 -52.48 -0.42 1.20 15 LS Contribution 287.75 15.07 4.34 4.34 Total: -1.00 -28.92 287.75 -4.82 -33.74 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -1.60 Total: 1.43 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -2.48 Total: -2.57 kcal Atomic # 7 Polarization: -31.18 SS G_CDS: 1.82 Total: -29.36 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.45 Total: -19.30 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.14 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.43 Total: -2.42 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.92 -4.82 -33.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744709873.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.309 kcal (2) G-P(sol) polarization free energy of solvation -28.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds