Wall clock time and date at job start Tue Mar 31 2020 06:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86805 * 119.99721 * 2 1 4 4 H 1.48503 * 109.46932 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47179 * 299.99838 * 3 2 1 6 6 H 1.48495 * 109.47349 * 60.00242 * 3 2 1 7 7 C 1.38819 * 120.00392 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99970 * 184.82791 * 7 2 1 9 9 O 1.34846 * 119.99535 * 4.82348 * 7 2 1 10 10 C 1.34819 * 116.99251 * 174.89500 * 9 7 2 11 11 O 1.21584 * 120.00680 * 5.13636 * 10 9 7 12 12 C 1.46928 * 119.99520 * 185.12858 * 10 9 7 13 13 C 1.38217 * 127.31089 * 176.23260 * 12 10 9 14 14 N 1.33286 * 106.18545 * 180.26317 * 13 12 10 15 15 N 1.28469 * 109.58139 * 0.02562 * 14 13 12 16 16 N 1.28687 * 110.93438 * 0.02562 * 15 14 13 17 17 C 1.40091 * 126.03659 * 179.97438 * 16 15 14 18 18 C 1.38861 * 120.07372 * 125.84008 * 17 16 15 19 19 C 1.38110 * 119.94092 * 179.74383 * 18 17 16 20 20 C 1.38312 * 120.09235 * 0.53241 * 19 18 17 21 21 C 1.38251 * 120.14985 * 359.74776 * 20 19 18 22 22 C 1.38242 * 120.05987 * 359.96997 * 21 20 19 23 23 Cl 1.73598 * 120.04909 * 180.02562 * 22 21 20 24 24 H 0.96998 * 120.00135 * 359.97438 * 1 2 3 25 25 H 1.08002 * 126.90724 * 0.29163 * 13 12 10 26 26 H 1.07997 * 120.02993 * 0.02694 * 18 17 16 27 27 H 1.08002 * 119.95230 * 180.25479 * 19 18 17 28 28 H 1.07998 * 119.92079 * 179.76112 * 20 19 18 29 29 H 1.08006 * 119.96822 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0082 -1.2022 -0.0005 8 1 3.0853 -1.2038 0.0782 9 8 1.3376 -2.3678 -0.0993 10 6 2.0754 -3.4916 -0.2005 11 8 3.2863 -3.4346 -0.1063 12 6 1.4162 -4.7855 -0.4247 13 6 2.0227 -6.0116 -0.6224 14 7 1.0357 -6.8920 -0.7873 15 7 -0.0963 -6.2903 -0.7043 16 7 0.0665 -5.0320 -0.4896 17 6 -0.9528 -4.0817 -0.3465 18 6 -0.9926 -3.2678 0.7779 19 6 -1.9957 -2.3283 0.9137 20 6 -2.9668 -2.2044 -0.0634 21 6 -2.9342 -3.0167 -1.1817 22 6 -1.9297 -3.9553 -1.3267 23 17 -1.8886 -4.9746 -2.7313 24 1 -0.4850 0.8400 0.0004 25 1 3.0832 -6.2154 -0.6394 26 1 -0.2372 -3.3664 1.5434 27 1 -2.0244 -1.6924 1.7862 28 1 -3.7521 -1.4714 0.0474 29 1 -3.6942 -2.9178 -1.9427 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744709873.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:00 Heat of formation + Delta-G solvation = 36.484287 kcal Electronic energy + Delta-G solvation = -21201.586746 eV Core-core repulsion = 17732.370922 eV Total energy + Delta-G solvation = -3469.215824 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.035 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.56098 -40.93352 -40.31159 -37.58674 -37.37038 -35.83495 -34.27544 -32.64081 -31.79340 -30.98691 -27.86430 -25.81917 -24.83353 -24.00547 -22.88795 -21.84188 -20.05428 -19.83926 -18.23601 -17.96376 -17.62413 -16.98157 -16.55041 -16.27874 -16.09452 -15.78851 -15.18323 -14.87237 -14.86045 -14.46679 -13.66010 -13.37217 -13.26165 -13.07917 -12.69335 -12.64607 -12.47222 -12.40675 -12.20610 -12.06783 -12.01312 -11.71928 -11.40127 -10.70848 -10.60118 -9.93205 -9.72079 -8.51840 -6.25867 -0.60674 0.12083 0.25121 0.79075 1.06553 1.10555 1.39704 1.41362 1.52857 1.86750 2.00978 2.46778 2.58450 3.01454 3.21658 3.57283 3.76513 3.89347 4.07483 4.21648 4.29744 4.43667 4.55442 4.73527 4.86852 5.02371 5.14764 5.20333 5.39041 5.47387 5.78416 5.79200 6.45757 6.89730 7.09375 7.59277 8.63017 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.015321 B = 0.007824 C = 0.005831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.087469 B = 3577.852000 C = 4800.984695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.022 3.978 3 Si 1.005 2.995 4 H -0.275 1.275 5 H -0.265 1.265 6 H -0.259 1.259 7 C -0.422 4.422 8 H 0.078 0.922 9 O -0.200 6.200 10 C 0.455 3.545 11 O -0.558 6.558 12 C -0.044 4.044 13 C 0.030 3.970 14 N -0.279 5.279 15 N -0.056 5.056 16 N -0.212 5.212 17 C 0.085 3.915 18 C -0.055 4.055 19 C -0.062 4.062 20 C -0.067 4.067 21 C -0.102 4.102 22 C -0.030 4.030 23 Cl -0.060 7.060 24 H 0.282 0.718 25 H 0.230 0.770 26 H 0.112 0.888 27 H 0.148 0.852 28 H 0.176 0.824 29 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.030 -0.998 0.011 9.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.184 4.184 3 Si 0.826 3.174 4 H -0.200 1.200 5 H -0.190 1.190 6 H -0.183 1.183 7 C -0.498 4.498 8 H 0.096 0.904 9 O -0.106 6.106 10 C 0.302 3.698 11 O -0.456 6.456 12 C -0.173 4.173 13 C -0.129 4.129 14 N -0.142 5.142 15 N -0.035 5.035 16 N -0.005 5.005 17 C -0.005 4.005 18 C -0.076 4.076 19 C -0.081 4.081 20 C -0.085 4.085 21 C -0.120 4.120 22 C -0.059 4.059 23 Cl -0.031 7.031 24 H 0.092 0.908 25 H 0.247 0.753 26 H 0.131 0.869 27 H 0.166 0.834 28 H 0.193 0.807 29 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -9.924 -2.067 -0.283 10.141 hybrid contribution 1.735 1.287 0.015 2.160 sum -8.189 -0.780 -0.268 8.231 Atomic orbital electron populations 1.69983 1.06369 1.29304 1.42462 1.26134 0.97037 1.00722 0.94525 0.84729 0.77817 0.75813 0.79066 1.20006 1.18976 1.18320 1.21452 0.92640 0.80675 1.55008 0.90406 1.84004 1.38636 1.13753 1.74177 1.19527 0.85387 0.84298 0.80584 1.90675 1.15034 1.86916 1.52929 1.21990 0.83480 0.96234 1.15641 1.24438 1.02034 0.85719 1.00757 1.74861 0.94694 1.26510 1.18141 1.78232 1.20244 0.88364 1.16652 1.44807 1.05028 1.06915 1.43787 1.17466 0.90364 0.94439 0.98245 1.20817 0.98026 0.94361 0.94380 1.21128 0.92092 0.94229 1.00639 1.21619 0.98624 0.97009 0.91292 1.21285 0.97115 0.93610 1.00038 1.20959 0.98165 0.97724 0.89053 1.98368 1.98192 1.67294 1.39232 0.90781 0.75318 0.86948 0.83388 0.80699 0.81209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -39.61 13.42 21.64 0.29 -39.32 15 2 C 0.02 1.07 5.50 84.90 0.47 1.54 15 3 Si 1.00 38.47 29.55 68.60 2.03 40.50 15 4 H -0.28 -10.95 7.11 99.48 0.71 -10.25 15 5 H -0.27 -9.68 7.11 99.48 0.71 -8.97 15 6 H -0.26 -9.19 7.11 99.48 0.71 -8.48 15 7 C -0.42 -22.92 9.64 67.96 0.66 -22.27 15 8 H 0.08 4.45 6.88 -2.91 -0.02 4.43 15 9 O -0.20 -10.56 6.43 10.54 0.07 -10.49 15 10 C 0.46 22.96 7.78 70.10 0.55 23.50 15 11 O -0.56 -30.10 16.20 19.56 0.32 -29.79 15 12 C -0.04 -1.90 6.88 40.55 0.28 -1.63 15 13 C 0.03 1.11 11.94 84.47 1.01 2.12 15 14 N -0.28 -10.74 12.34 -56.76 -0.70 -11.44 15 15 N -0.06 -2.21 11.93 37.02 0.44 -1.77 15 16 N -0.21 -8.69 3.12 -175.96 -0.55 -9.23 15 17 C 0.08 3.27 5.53 38.14 0.21 3.48 15 18 C -0.06 -2.05 7.49 22.39 0.17 -1.89 15 19 C -0.06 -1.89 9.78 22.26 0.22 -1.67 15 20 C -0.07 -1.67 10.04 22.29 0.22 -1.45 15 21 C -0.10 -2.70 9.82 22.27 0.22 -2.49 15 22 C -0.03 -1.03 6.33 22.44 0.14 -0.89 15 23 Cl -0.06 -1.96 27.53 -2.72 -0.07 -2.04 15 24 H 0.28 11.89 8.31 -92.71 -0.77 11.12 15 25 H 0.23 7.04 8.06 -2.91 -0.02 7.01 15 26 H 0.11 4.51 7.78 -2.91 -0.02 4.49 15 27 H 0.15 4.03 8.06 -2.91 -0.02 4.01 15 28 H 0.18 2.89 8.06 -2.91 -0.02 2.87 15 29 H 0.17 3.34 8.06 -2.91 -0.02 3.31 15 Total: -1.00 -62.85 287.75 7.17 -55.68 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 1.21 Total: 9.53 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 4.14 Total: -1.64 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: -0.52 Total: -61.76 kcal Atomic # 8 Polarization: -40.66 SS G_CDS: 0.38 Total: -40.28 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -0.07 Total: -2.04 kcal Total: -62.85 7.17 -55.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744709873.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.163 kcal (2) G-P(sol) polarization free energy of solvation -62.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds