Wall clock time and date at job start Tue Mar 31 2020 06:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31304 * 1 3 3 Si 1.86801 * 120.00085 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99828 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99988 * 3 2 1 6 6 H 1.48502 * 109.46906 * 149.99895 * 3 2 1 7 7 C 1.38981 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00389 * 180.02562 * 7 2 1 9 9 N 1.37315 * 119.99785 * 359.72332 * 7 2 1 10 10 C 1.36602 * 126.07539 * 180.27845 * 9 7 2 11 11 C 1.35641 * 107.49902 * 180.02562 * 10 9 7 12 12 N 1.40574 * 126.07323 * 180.02562 * 11 10 9 13 13 S 1.65599 * 120.00131 * 134.99875 * 12 11 10 14 14 O 1.42105 * 106.40268 * 178.54129 * 13 12 11 15 15 O 1.42095 * 106.40160 * 311.46240 * 13 12 11 16 16 C 1.76204 * 107.21772 * 64.99986 * 13 12 11 17 17 C 1.38228 * 119.99898 * 269.72774 * 16 13 12 18 18 C 1.38238 * 119.99953 * 179.76466 * 17 16 13 19 19 C 1.38239 * 119.99915 * 0.50598 * 18 17 16 20 20 C 1.38240 * 119.99649 * 359.74876 * 19 18 17 21 21 C 1.38233 * 120.00119 * 359.97438 * 20 19 18 22 22 C 1.40654 * 107.85295 * 0.02562 * 11 10 9 23 23 N 1.30929 * 108.39978 * 359.71415 * 22 11 10 24 24 H 0.96995 * 119.99895 * 0.02562 * 1 2 3 25 25 H 1.07996 * 126.25419 * 359.96699 * 10 9 7 26 26 H 0.97006 * 120.00126 * 315.00220 * 12 11 10 27 27 H 1.08001 * 120.00153 * 359.97438 * 17 16 13 28 28 H 1.07997 * 120.00267 * 180.22716 * 18 17 16 29 29 H 1.07993 * 120.00279 * 179.72415 * 19 18 17 30 30 H 1.08002 * 119.99894 * 179.97438 * 20 19 18 31 31 H 1.07995 * 119.99796 * 179.97438 * 21 20 19 32 32 H 1.07997 * 125.79620 * 179.97438 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2471 1.6177 0.0000 4 1 2.4946 2.0463 -1.4001 5 1 1.4445 2.6526 0.7000 6 1 3.5446 1.4401 0.7001 7 6 2.0080 -1.2036 -0.0005 8 1 3.0880 -1.2037 -0.0001 9 7 1.3214 -2.3928 0.0047 10 6 1.8753 -3.6414 0.0102 11 6 0.8582 -4.5388 0.0135 12 7 0.9893 -5.9384 0.0200 13 16 0.0561 -6.8528 1.0376 14 8 0.3957 -8.2090 0.7833 15 8 0.1578 -6.2537 2.3221 16 6 -1.6190 -6.6552 0.5277 17 6 -2.3915 -5.6448 1.0689 18 6 -3.7042 -5.4868 0.6654 19 6 -4.2474 -6.3457 -0.2717 20 6 -3.4763 -7.3595 -0.8090 21 6 -2.1619 -7.5139 -0.4096 22 6 -0.3509 -3.8202 0.0094 23 7 -0.0714 -2.5411 0.0099 24 1 -0.4850 0.8400 -0.0004 25 1 2.9304 -3.8720 0.0107 26 1 1.6264 -6.3687 -0.5716 27 1 -1.9686 -4.9767 1.8046 28 1 -4.3067 -4.6950 1.0855 29 1 -5.2742 -6.2251 -0.5837 30 1 -3.9008 -8.0309 -1.5408 31 1 -1.5597 -8.3062 -0.8291 32 1 -1.3414 -4.2505 0.0102 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747406285.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:14 Heat of formation + Delta-G solvation = 41.210509 kcal Electronic energy + Delta-G solvation = -20923.722412 eV Core-core repulsion = 17592.588334 eV Total energy + Delta-G solvation = -3331.134079 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.65059 -39.00733 -36.86525 -35.49826 -34.56537 -33.05983 -31.31176 -31.03934 -30.24916 -27.45143 -24.88029 -23.13037 -22.72307 -20.81974 -20.07059 -19.10983 -18.09111 -17.52327 -16.88151 -15.96289 -15.78623 -15.49950 -15.08538 -14.49639 -14.33452 -13.94390 -13.51946 -13.43693 -13.29294 -12.72259 -12.25891 -12.04061 -11.89128 -11.72400 -11.68944 -11.58009 -11.25363 -11.19190 -10.96066 -10.67762 -10.56377 -10.12729 -9.41260 -9.29538 -8.96420 -8.85115 -8.23091 -7.05293 -6.63907 -4.34513 0.67449 0.97566 1.34815 2.91540 3.02298 3.07255 3.28613 3.46462 3.63513 3.79659 3.97979 4.16360 4.59487 4.64431 4.91712 4.94485 4.95980 5.03184 5.36425 5.53089 5.72700 5.96530 5.98179 6.16719 6.25600 6.27734 6.33180 6.38813 6.73707 6.87961 7.06231 7.22073 7.52890 7.76522 8.08572 8.57801 9.25875 9.49060 10.32265 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.022877 B = 0.004909 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.617091 B = 5701.881296 C = 6538.082694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.047 3.953 3 Si 0.936 3.064 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.322 4.322 8 H 0.119 0.881 9 N -0.140 5.140 10 C -0.057 4.057 11 C -0.050 4.050 12 N -1.018 6.018 13 S 2.698 3.302 14 O -0.974 6.974 15 O -0.950 6.950 16 C -0.670 4.670 17 C -0.011 4.011 18 C -0.141 4.141 19 C -0.067 4.067 20 C -0.148 4.148 21 C -0.021 4.021 22 C -0.072 4.072 23 N -0.246 5.246 24 H 0.276 0.724 25 H 0.151 0.849 26 H 0.410 0.590 27 H 0.147 0.853 28 H 0.133 0.867 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.137 0.863 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.571 -9.170 -1.927 10.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.170 4.170 3 Si 0.760 3.240 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.454 4.454 8 H 0.137 0.863 9 N 0.092 4.908 10 C -0.209 4.209 11 C -0.158 4.158 12 N -0.772 5.772 13 S 2.788 3.212 14 O -0.965 6.965 15 O -0.940 6.940 16 C -0.757 4.757 17 C -0.030 4.030 18 C -0.160 4.160 19 C -0.085 4.085 20 C -0.166 4.166 21 C -0.040 4.040 22 C -0.248 4.248 23 N -0.076 5.076 24 H 0.086 0.914 25 H 0.168 0.832 26 H 0.245 0.755 27 H 0.164 0.836 28 H 0.151 0.849 29 H 0.145 0.855 30 H 0.146 0.854 31 H 0.155 0.845 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.091 -8.271 -1.104 9.775 hybrid contribution 0.346 -0.021 -0.832 0.902 sum -4.745 -8.292 -1.936 9.748 Atomic orbital electron populations 1.70194 1.06161 1.28135 1.35321 1.25644 0.95736 1.00341 0.95287 0.85801 0.79479 0.79763 0.78990 1.19567 1.20054 1.18701 1.19944 0.91813 0.80414 1.53273 0.86337 1.44594 1.03781 1.03614 1.38810 1.21650 0.97613 0.85041 1.16610 1.16694 0.93522 0.80741 1.24819 1.52115 1.54100 1.13333 1.57672 1.01751 0.73578 0.72205 0.73674 1.93545 1.83407 1.33583 1.85926 1.93581 1.85605 1.77510 1.37318 1.31005 1.25986 1.06776 1.11886 1.21087 0.93596 0.93077 0.95289 1.21339 0.95690 1.00186 0.98799 1.21452 0.99599 0.93346 0.94143 1.21231 0.94521 0.99458 1.01434 1.20891 0.95561 0.95463 0.92095 1.23954 0.96939 0.92603 1.11329 1.78197 0.90683 1.14021 1.24730 0.91390 0.83201 0.75450 0.83563 0.84906 0.85482 0.85351 0.84485 0.82461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.63 11.81 55.49 0.66 -19.98 16 2 C 0.05 1.17 5.50 -17.50 -0.10 1.08 16 3 Si 0.94 18.37 29.55 -169.99 -5.02 13.34 16 4 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 7 C -0.32 -8.25 10.25 -14.82 -0.15 -8.40 16 8 H 0.12 2.72 7.83 -52.49 -0.41 2.31 16 9 N -0.14 -3.71 3.74 -11.40 -0.04 -3.75 16 10 C -0.06 -1.32 11.50 -16.36 -0.19 -1.51 16 11 C -0.05 -1.09 6.41 -83.86 -0.54 -1.63 16 12 N -1.02 -17.87 5.93 32.32 0.19 -17.67 16 13 S 2.70 46.83 5.61 -107.50 -0.60 46.23 16 14 O -0.97 -17.23 17.28 -57.17 -0.99 -18.22 16 15 O -0.95 -19.74 17.00 -57.17 -0.97 -20.71 16 16 C -0.67 -10.59 5.22 -39.59 -0.21 -10.80 16 17 C -0.01 -0.18 6.35 -39.59 -0.25 -0.43 16 18 C -0.14 -1.88 10.05 -39.58 -0.40 -2.28 16 19 C -0.07 -0.77 10.05 -39.58 -0.40 -1.17 16 20 C -0.15 -1.72 10.05 -39.58 -0.40 -2.12 16 21 C -0.02 -0.28 9.52 -39.58 -0.38 -0.66 16 22 C -0.07 -1.69 10.73 -17.03 -0.18 -1.87 16 23 N -0.25 -6.67 10.40 30.80 0.32 -6.35 16 24 H 0.28 6.73 8.31 -40.82 -0.34 6.39 16 25 H 0.15 2.96 8.06 -52.49 -0.42 2.54 16 26 H 0.41 5.92 8.96 -34.47 -0.31 5.61 16 27 H 0.15 2.47 7.18 -52.49 -0.38 2.09 16 28 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 29 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 30 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.14 1.61 7.62 -52.49 -0.40 1.21 16 32 H 0.16 3.27 4.19 -52.49 -0.22 3.05 16 LS Contribution 294.60 15.07 4.44 4.44 Total: -1.00 -33.48 294.60 -7.75 -41.23 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -2.54 Total: 11.23 kcal Atomic # 6 Polarization: -26.61 SS G_CDS: -3.18 Total: -29.79 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: 1.13 Total: -47.75 kcal Atomic # 8 Polarization: -36.97 SS G_CDS: -1.96 Total: -38.93 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.02 Total: 13.34 kcal Atomic # 16 Polarization: 46.83 SS G_CDS: -0.60 Total: 46.23 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.48 -7.75 -41.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747406285.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.441 kcal (2) G-P(sol) polarization free energy of solvation -33.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds