Wall clock time and date at job start Tue Mar 31 2020 07:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29998 * 127.33546 * 2 1 4 4 O 1.20653 * 112.32277 * 179.97438 * 3 2 1 5 5 C 1.33469 * 113.17305 * 0.02562 * 4 3 2 6 6 C 1.50704 * 126.83509 * 179.97438 * 5 4 3 7 7 F 1.39905 * 109.47048 * 270.01742 * 6 5 4 8 8 F 1.39898 * 109.47161 * 30.02137 * 6 5 4 9 9 F 1.39906 * 109.46875 * 150.02341 * 6 5 4 10 10 C 1.37439 * 106.33156 * 359.97438 * 5 4 3 11 11 C 1.47252 * 128.57809 * 179.97438 * 10 5 4 12 12 O 1.21531 * 119.99846 * 270.02580 * 11 10 5 13 13 O 1.34760 * 119.99886 * 90.02392 * 11 10 5 14 14 C 1.45205 * 116.99779 * 179.97438 * 13 11 10 15 15 C 1.52991 * 109.47225 * 179.97438 * 14 13 11 16 16 C 1.50698 * 109.47242 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00098 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99910 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00306 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99841 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47010 * 90.00022 * 20 18 16 22 22 H 1.48504 * 109.47002 * 209.99714 * 20 18 16 23 23 H 1.48498 * 109.47027 * 329.99539 * 20 18 16 24 24 H 1.08999 * 109.47308 * 90.02459 * 1 2 3 25 25 H 1.08999 * 109.47156 * 210.02551 * 1 2 3 26 26 H 1.09004 * 109.47222 * 330.02355 * 1 2 3 27 27 H 1.09001 * 109.47128 * 300.00348 * 14 13 11 28 28 H 1.09005 * 109.46519 * 60.00035 * 14 13 11 29 29 H 1.08996 * 109.47268 * 300.00970 * 15 14 13 30 30 H 1.09008 * 109.47024 * 60.00118 * 15 14 13 31 31 H 0.97002 * 120.00543 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0336 0.0000 4 8 3.4608 0.7211 0.0005 5 6 3.6502 -0.6001 0.0004 6 6 4.9724 -1.3232 0.0003 7 9 5.3818 -1.5465 -1.3187 8 9 5.9296 -0.5451 0.6604 9 9 4.8333 -2.5495 0.6593 10 6 2.3995 -1.1699 0.0003 11 6 2.0411 -2.5981 -0.0004 12 8 1.8935 -3.1871 -1.0532 13 8 1.8768 -3.2521 1.1664 14 6 1.5234 -4.6584 1.0897 15 6 1.3814 -5.2264 2.5032 16 6 1.0152 -6.6860 2.4236 17 1 0.8961 -7.1612 1.4612 18 6 0.8322 -7.4148 3.5796 19 7 0.9778 -6.8364 4.7517 20 14 0.3790 -9.2244 3.4809 21 1 1.6170 -10.0440 3.4553 22 1 -0.4361 -9.5958 4.6654 23 1 -0.4043 -9.4717 2.2438 24 1 -0.3634 -0.0004 -1.0276 25 1 -0.3633 -0.8897 0.5142 26 1 -0.3634 0.8902 0.5135 27 1 0.5784 -4.7670 0.5574 28 1 2.3048 -5.2008 0.5573 29 1 2.3266 -5.1177 3.0351 30 1 0.6003 -4.6839 3.0360 31 1 0.8494 -7.3492 5.5650 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750491752.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:20 Heat of formation + Delta-G solvation = -175.559935 kcal Electronic energy + Delta-G solvation = -23577.473503 eV Core-core repulsion = 19220.037190 eV Total energy + Delta-G solvation = -4357.436313 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.071 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.60965 -48.11601 -48.10912 -45.55714 -40.13415 -36.45044 -35.19118 -33.56230 -33.34097 -30.43505 -29.28350 -27.40595 -25.76974 -24.51818 -21.85673 -21.38567 -20.88150 -19.21085 -19.08731 -18.77205 -18.14598 -17.85722 -16.95696 -16.25190 -16.09811 -15.60617 -14.91589 -14.86414 -14.57695 -14.47621 -14.19428 -14.19131 -14.02194 -13.75447 -13.70050 -13.22024 -13.11490 -12.67006 -12.44186 -11.92175 -11.38836 -11.20809 -11.05539 -10.86319 -10.62962 -10.50919 -10.44693 -9.82676 -9.76518 -9.38846 -8.50511 -6.16242 -4.21433 0.28996 1.27782 1.32440 1.82350 2.46324 2.74814 3.10053 3.25278 3.31653 3.34935 3.56150 3.78736 3.84404 3.96308 4.33695 4.36237 4.77671 4.99487 5.14362 5.20631 5.23933 5.64440 5.84554 5.92761 6.47074 6.57910 7.42308 7.46392 7.51927 7.69405 7.86860 8.14639 8.83805 9.43551 10.95117 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.020659 B = 0.004041 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.990933 B = 6927.837878 C = 7581.640776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.068 3.932 3 N -0.325 5.325 4 O 0.141 5.859 5 C -0.088 4.088 6 C 0.564 3.436 7 F -0.154 7.154 8 F -0.156 7.156 9 F -0.143 7.143 10 C -0.140 4.140 11 C 0.532 3.468 12 O -0.481 6.481 13 O -0.336 6.336 14 C 0.073 3.927 15 C 0.025 3.975 16 C -0.528 4.528 17 H 0.060 0.940 18 C 0.062 3.938 19 N -0.889 5.889 20 Si 0.900 3.100 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.272 1.272 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.031 0.969 30 H 0.030 0.970 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.353 14.983 -9.254 18.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 N -0.026 5.026 4 O 0.072 5.928 5 C -0.153 4.153 6 C 0.507 3.493 7 F -0.135 7.135 8 F -0.137 7.137 9 F -0.124 7.124 10 C -0.146 4.146 11 C 0.372 3.628 12 O -0.369 6.369 13 O -0.251 6.251 14 C 0.001 3.999 15 C -0.012 4.012 16 C -0.567 4.567 17 H 0.079 0.921 18 C -0.140 4.140 19 N -0.527 5.527 20 Si 0.727 3.273 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 H 0.112 0.888 25 H 0.113 0.887 26 H 0.111 0.889 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.092 16.012 -9.340 18.983 hybrid contribution -0.080 -1.897 -0.042 1.899 sum 4.012 14.115 -9.382 17.417 Atomic orbital electron populations 1.20406 0.83555 1.05437 1.04692 1.24882 0.99267 0.84833 1.00261 1.73629 0.88615 1.22589 1.17777 1.84651 1.21849 1.19506 1.66812 1.24170 0.95019 0.86710 1.09432 1.16508 0.80458 0.77132 0.75165 1.93322 1.90713 1.94651 1.34860 1.93296 1.65282 1.74364 1.80738 1.93390 1.95462 1.42928 1.80599 1.21371 0.91836 0.94411 1.06945 1.19446 0.74901 0.84773 0.83713 1.90916 1.45691 1.67500 1.32810 1.86701 1.78305 1.29097 1.31033 1.23900 0.99685 0.72581 1.03711 1.19202 0.98917 0.95299 0.87809 1.20936 1.48905 0.93760 0.93049 0.92143 1.24974 0.94997 0.98871 0.95184 1.69967 1.48695 1.36601 0.97418 0.86459 0.78598 0.84435 0.77758 1.20416 1.21023 1.19683 0.88779 0.88710 0.88912 0.91666 0.91640 0.95106 0.95189 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.49 36.01 0.38 -0.37 16 2 C 0.07 0.83 7.59 -79.75 -0.61 0.23 16 3 N -0.33 -4.01 12.01 34.79 0.42 -3.59 16 4 O 0.14 1.69 11.06 18.71 0.21 1.90 16 5 C -0.09 -1.13 6.85 -34.60 -0.24 -1.37 16 6 C 0.56 6.91 3.53 36.01 0.13 7.04 16 7 F -0.15 -1.85 17.30 2.25 0.04 -1.81 16 8 F -0.16 -1.73 17.30 2.25 0.04 -1.69 16 9 F -0.14 -2.05 16.09 2.25 0.04 -2.01 16 10 C -0.14 -2.01 6.31 -102.91 -0.65 -2.66 16 11 C 0.53 9.14 6.73 34.39 0.23 9.37 16 12 O -0.48 -9.13 16.90 -19.29 -0.33 -9.46 16 13 O -0.34 -6.44 10.23 -40.65 -0.42 -6.86 16 14 C 0.07 1.54 5.41 37.15 0.20 1.74 16 15 C 0.02 0.62 5.35 -27.89 -0.15 0.48 16 16 C -0.53 -14.36 9.11 -34.44 -0.31 -14.68 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -25.73 13.29 55.43 0.74 -25.00 16 20 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 304.91 15.07 4.59 4.59 Total: -1.00 -29.65 304.91 -3.31 -32.96 By element: Atomic # 1 Polarization: -3.80 SS G_CDS: -2.50 Total: -6.30 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -1.11 Total: 1.40 kcal Atomic # 7 Polarization: -29.74 SS G_CDS: 1.15 Total: -28.59 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.54 Total: -14.41 kcal Atomic # 9 Polarization: -5.63 SS G_CDS: 0.11 Total: -5.51 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.65 -3.31 -32.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750491752.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.605 kcal (2) G-P(sol) polarization free energy of solvation -29.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds