Wall clock time and date at job start Tue Mar 31 2020 07:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29998 * 127.33546 * 2 1 4 4 O 1.20653 * 112.32277 * 179.97438 * 3 2 1 5 5 C 1.33469 * 113.17305 * 0.02562 * 4 3 2 6 6 C 1.50704 * 126.83509 * 179.97438 * 5 4 3 7 7 F 1.39905 * 109.47048 * 270.01742 * 6 5 4 8 8 F 1.39898 * 109.47161 * 30.02137 * 6 5 4 9 9 F 1.39906 * 109.46875 * 150.02341 * 6 5 4 10 10 C 1.37439 * 106.33156 * 359.97438 * 5 4 3 11 11 C 1.47252 * 128.57809 * 179.97438 * 10 5 4 12 12 O 1.21531 * 119.99846 * 270.02580 * 11 10 5 13 13 O 1.34760 * 119.99886 * 90.02392 * 11 10 5 14 14 C 1.45205 * 116.99779 * 179.97438 * 13 11 10 15 15 C 1.52991 * 109.47225 * 179.97438 * 14 13 11 16 16 C 1.50698 * 109.47242 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00098 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99910 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00306 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99841 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47010 * 90.00022 * 20 18 16 22 22 H 1.48504 * 109.47002 * 209.99714 * 20 18 16 23 23 H 1.48498 * 109.47027 * 329.99539 * 20 18 16 24 24 H 1.08999 * 109.47308 * 90.02459 * 1 2 3 25 25 H 1.08999 * 109.47156 * 210.02551 * 1 2 3 26 26 H 1.09004 * 109.47222 * 330.02355 * 1 2 3 27 27 H 1.09001 * 109.47128 * 300.00348 * 14 13 11 28 28 H 1.09005 * 109.46519 * 60.00035 * 14 13 11 29 29 H 1.08996 * 109.47268 * 300.00970 * 15 14 13 30 30 H 1.09008 * 109.47024 * 60.00118 * 15 14 13 31 31 H 0.97002 * 120.00543 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0336 0.0000 4 8 3.4608 0.7211 0.0005 5 6 3.6502 -0.6001 0.0004 6 6 4.9724 -1.3232 0.0003 7 9 5.3818 -1.5465 -1.3187 8 9 5.9296 -0.5451 0.6604 9 9 4.8333 -2.5495 0.6593 10 6 2.3995 -1.1699 0.0003 11 6 2.0411 -2.5981 -0.0004 12 8 1.8935 -3.1871 -1.0532 13 8 1.8768 -3.2521 1.1664 14 6 1.5234 -4.6584 1.0897 15 6 1.3814 -5.2264 2.5032 16 6 1.0152 -6.6860 2.4236 17 1 0.8961 -7.1612 1.4612 18 6 0.8322 -7.4148 3.5796 19 7 0.9778 -6.8364 4.7517 20 14 0.3790 -9.2244 3.4809 21 1 1.6170 -10.0440 3.4553 22 1 -0.4361 -9.5958 4.6654 23 1 -0.4043 -9.4717 2.2438 24 1 -0.3634 -0.0004 -1.0276 25 1 -0.3633 -0.8897 0.5142 26 1 -0.3634 0.8902 0.5135 27 1 0.5784 -4.7670 0.5574 28 1 2.3048 -5.2008 0.5573 29 1 2.3266 -5.1177 3.0351 30 1 0.6003 -4.6839 3.0360 31 1 0.8494 -7.3492 5.5650 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750491752.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:20 Heat of formation + Delta-G solvation = -191.745154 kcal Electronic energy + Delta-G solvation = -23578.175347 eV Core-core repulsion = 19220.037190 eV Total energy + Delta-G solvation = -4358.138157 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -51.62843 -49.17444 -49.08343 -46.56086 -41.60770 -37.98196 -36.19263 -35.46405 -34.52084 -32.36893 -30.10944 -28.57370 -27.30185 -26.02587 -23.27323 -22.69764 -22.32911 -20.29086 -20.16370 -19.78555 -19.29707 -19.02502 -18.49436 -18.02187 -17.65019 -16.86702 -16.47846 -15.93770 -15.89442 -15.49706 -15.23745 -15.20296 -15.15603 -14.99965 -14.65871 -14.45505 -14.37856 -14.26212 -13.63528 -13.24814 -13.12210 -12.84793 -12.68144 -12.64179 -12.27304 -11.70484 -11.58617 -11.56668 -11.43341 -11.39053 -10.60635 -8.26294 -6.39441 -0.78435 0.23749 0.32742 0.47059 1.21710 1.44252 1.44690 1.56099 1.65038 2.07912 2.39218 2.58632 2.77888 2.80602 2.90159 3.08975 3.31090 3.43806 4.05420 4.15044 4.18726 4.50743 4.55951 4.64698 4.96165 5.01133 5.39487 5.45114 5.71173 6.04769 6.27843 6.46637 6.74267 7.30679 8.86213 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.020659 B = 0.004041 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.990933 B = 6927.837878 C = 7581.640776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.078 3.922 3 N -0.329 5.329 4 O 0.148 5.852 5 C -0.074 4.074 6 C 0.568 3.432 7 F -0.151 7.151 8 F -0.146 7.146 9 F -0.156 7.156 10 C -0.168 4.168 11 C 0.541 3.459 12 O -0.499 6.499 13 O -0.344 6.344 14 C 0.088 3.912 15 C 0.030 3.970 16 C -0.548 4.548 17 H 0.068 0.932 18 C 0.008 3.992 19 N -0.927 5.927 20 Si 0.972 3.028 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.261 1.261 24 H 0.113 0.887 25 H 0.090 0.910 26 H 0.113 0.887 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.006 0.994 30 H 0.010 0.990 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.958 15.163 -10.143 18.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 N -0.031 5.031 4 O 0.081 5.919 5 C -0.140 4.140 6 C 0.512 3.488 7 F -0.132 7.132 8 F -0.127 7.127 9 F -0.138 7.138 10 C -0.173 4.173 11 C 0.382 3.618 12 O -0.388 6.388 13 O -0.260 6.260 14 C 0.015 3.985 15 C -0.007 4.007 16 C -0.586 4.586 17 H 0.086 0.914 18 C -0.191 4.191 19 N -0.566 5.566 20 Si 0.795 3.205 21 H -0.197 1.197 22 H -0.206 1.206 23 H -0.185 1.185 24 H 0.131 0.869 25 H 0.109 0.891 26 H 0.132 0.868 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.025 0.975 30 H 0.029 0.971 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.709 16.216 -10.247 19.538 hybrid contribution 0.083 -1.845 0.227 1.861 sum 3.792 14.372 -10.020 17.925 Atomic orbital electron populations 1.20628 0.81361 1.06287 1.06137 1.25329 1.00470 0.83624 0.98804 1.73635 0.88575 1.22444 1.18417 1.84670 1.21976 1.18797 1.66478 1.24199 0.94758 0.86991 1.08059 1.16414 0.80506 0.76658 0.75221 1.93330 1.90641 1.94611 1.34595 1.93318 1.64838 1.73979 1.80564 1.93366 1.95553 1.43908 1.80937 1.21218 0.93194 0.93288 1.09630 1.19662 0.73868 0.85592 0.82634 1.90900 1.46481 1.68259 1.33134 1.86669 1.78744 1.28131 1.32429 1.23452 1.00307 0.73755 1.00945 1.19007 0.96811 0.95045 0.89873 1.21351 1.48838 0.94838 0.93576 0.91351 1.25927 0.94705 1.03757 0.94718 1.70090 1.49671 1.38588 0.98235 0.85346 0.78521 0.78444 0.78142 1.19725 1.20585 1.18528 0.86922 0.89078 0.86801 0.90720 0.91407 0.97539 0.97125 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.37 10.49 71.24 0.75 -0.62 16 2 C 0.08 1.78 7.59 45.17 0.34 2.12 16 3 N -0.33 -7.50 12.01 -44.74 -0.54 -8.03 16 4 O 0.15 3.33 11.06 77.21 0.85 4.18 16 5 C -0.07 -1.82 6.85 25.50 0.17 -1.65 16 6 C 0.57 13.42 3.53 71.24 0.25 13.67 16 7 F -0.15 -3.46 17.30 44.97 0.78 -2.68 16 8 F -0.15 -3.06 17.30 44.97 0.78 -2.28 16 9 F -0.16 -4.45 16.09 44.97 0.72 -3.72 16 10 C -0.17 -4.65 6.31 -18.76 -0.12 -4.77 16 11 C 0.54 18.32 6.73 70.19 0.47 18.80 16 12 O -0.50 -18.61 16.90 19.74 0.33 -18.28 16 13 O -0.34 -13.21 10.23 -56.71 -0.58 -13.79 16 14 C 0.09 3.70 5.41 71.98 0.39 4.09 16 15 C 0.03 1.54 5.35 29.84 0.16 1.70 16 16 C -0.55 -29.91 9.11 25.60 0.23 -29.68 16 17 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 18 C 0.01 0.45 5.46 84.65 0.46 0.91 16 19 N -0.93 -54.30 13.29 21.45 0.28 -54.02 16 20 Si 0.97 42.43 29.54 68.60 2.03 44.45 16 21 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 22 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 24 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 28 H 0.07 2.81 8.14 -2.38 -0.02 2.79 16 29 H 0.01 0.34 8.14 -2.39 -0.02 0.33 16 30 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -62.60 304.91 8.97 -53.63 By element: Atomic # 1 Polarization: -5.22 SS G_CDS: 1.19 Total: -4.03 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 3.12 Total: 4.57 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: -0.25 Total: -62.05 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: 0.61 Total: -27.89 kcal Atomic # 9 Polarization: -10.96 SS G_CDS: 2.28 Total: -8.68 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal Total: -62.60 8.97 -53.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750491752.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.117 kcal (2) G-P(sol) polarization free energy of solvation -62.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds