Wall clock time and date at job start Tue Mar 31 2020 06:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31425 * 1 3 3 Si 1.86796 * 119.99858 * 2 1 4 4 H 1.48501 * 109.47614 * 240.00381 * 3 2 1 5 5 H 1.48499 * 109.47522 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46909 * 120.00303 * 3 2 1 7 7 C 1.38792 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99916 * 179.97438 * 7 2 1 9 9 O 1.34862 * 120.00137 * 359.97438 * 7 2 1 10 10 C 1.34752 * 117.00075 * 180.02562 * 9 7 2 11 11 O 1.21518 * 119.99856 * 0.02562 * 10 9 7 12 12 C 1.47582 * 119.99908 * 180.02562 * 10 9 7 13 13 C 1.40672 * 126.05525 * 180.02562 * 12 10 9 14 14 N 1.31242 * 106.61767 * 179.72041 * 13 12 10 15 15 N 1.40100 * 107.19990 * 0.42600 * 14 13 12 16 16 C 1.40135 * 125.55745 * 179.82533 * 15 14 13 17 17 C 1.38867 * 120.05662 * 359.68400 * 16 15 14 18 18 C 1.38091 * 119.94383 * 180.02562 * 17 16 15 19 19 C 1.38399 * 120.05850 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 119.94324 * 179.97438 * 19 18 17 21 21 C 1.38402 * 120.10880 * 0.25985 * 19 18 17 22 22 C 1.38092 * 120.05709 * 359.48312 * 21 19 18 23 23 N 1.28707 * 108.88632 * 359.55243 * 15 14 13 24 24 H 0.97003 * 119.99929 * 359.97438 * 1 2 3 25 25 H 1.07996 * 126.68966 * 0.02562 * 13 12 10 26 26 H 1.08008 * 120.02402 * 0.02562 * 17 16 15 27 27 H 1.08007 * 119.96919 * 179.97438 * 18 17 16 28 28 H 1.07993 * 119.96894 * 179.72328 * 21 19 18 29 29 H 1.07997 * 120.03385 * 180.26021 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6966 -1.2125 5 1 1.2832 2.7465 0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0082 -1.2020 -0.0005 8 1 3.0882 -1.2020 -0.0010 9 8 1.3339 -2.3699 -0.0005 10 6 2.0678 -3.5001 -0.0005 11 8 3.2814 -3.4364 -0.0001 12 6 1.3978 -4.8150 -0.0011 13 6 2.0353 -6.0690 -0.0007 14 7 1.0843 -6.9735 0.0047 15 7 -0.1383 -6.2892 -0.0024 16 6 -1.4062 -6.8860 -0.0033 17 6 -1.5236 -8.2697 -0.0035 18 6 -2.7742 -8.8553 -0.0049 19 6 -3.9100 -8.0645 -0.0067 20 17 -5.4806 -8.8039 -0.0092 21 6 -3.7956 -6.6852 -0.0125 22 6 -2.5474 -6.0947 -0.0057 23 7 0.0930 -5.0231 -0.0021 24 1 -0.4850 0.8401 0.0004 25 1 3.0996 -6.2518 0.0005 26 1 -0.6375 -8.8873 -0.0025 27 1 -2.8660 -9.9315 -0.0055 28 1 -4.6834 -6.0703 -0.0184 29 1 -2.4586 -5.0184 -0.0060 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751820104.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:02 Heat of formation + Delta-G solvation = 58.858686 kcal Electronic energy + Delta-G solvation = -19462.155370 eV Core-core repulsion = 15993.909773 eV Total energy + Delta-G solvation = -3468.245597 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.035 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.46539 -39.55357 -38.82218 -36.80197 -35.31716 -33.66642 -32.46727 -32.13346 -31.32068 -29.46957 -25.96248 -24.52496 -23.75957 -22.36972 -21.40309 -20.19061 -18.37672 -17.81589 -16.99486 -16.82799 -16.24132 -15.67870 -15.11976 -14.67116 -14.47080 -14.41130 -14.29221 -13.86482 -13.72189 -12.72562 -12.62883 -12.03187 -11.99630 -11.88264 -11.59717 -11.31413 -11.19127 -10.77566 -10.59624 -10.57030 -10.52266 -9.98147 -9.90144 -9.44830 -9.37882 -8.69005 -8.31092 -6.53811 -4.17570 0.33643 0.91615 1.73968 1.76364 2.00588 2.06049 3.13408 3.13590 3.17855 3.31777 3.71531 3.88943 3.90740 4.34900 4.50126 4.56170 4.79922 5.03786 5.05808 5.05903 5.26184 5.51313 5.61880 5.79905 5.85568 5.93936 6.13438 6.18955 6.56368 6.85681 7.26476 7.79262 7.95951 8.53426 8.92677 9.69790 10.62557 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.022890 B = 0.003359 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.955076 B = 8334.751420 C = 9547.861119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.043 3.957 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.376 4.376 8 H 0.101 0.899 9 O -0.187 6.187 10 C 0.469 3.531 11 O -0.544 6.544 12 C 0.005 3.995 13 C 0.080 3.920 14 N -0.288 5.288 15 N -0.181 5.181 16 C 0.176 3.824 17 C -0.102 4.102 18 C -0.091 4.091 19 C -0.042 4.042 20 Cl -0.067 7.067 21 C -0.086 4.086 22 C -0.100 4.100 23 N -0.186 5.186 24 H 0.273 0.727 25 H 0.219 0.781 26 H 0.150 0.850 27 H 0.144 0.856 28 H 0.147 0.853 29 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.926 -15.597 -0.026 17.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.163 4.163 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.453 4.453 8 H 0.119 0.881 9 O -0.091 6.091 10 C 0.314 3.686 11 O -0.440 6.440 12 C -0.162 4.162 13 C -0.112 4.112 14 N -0.115 5.115 15 N -0.072 5.072 16 C 0.084 3.916 17 C -0.123 4.123 18 C -0.110 4.110 19 C -0.069 4.069 20 Cl -0.038 7.038 21 C -0.106 4.106 22 C -0.121 4.121 23 N -0.029 5.029 24 H 0.083 0.917 25 H 0.236 0.764 26 H 0.167 0.833 27 H 0.162 0.838 28 H 0.164 0.836 29 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -9.100 -16.072 -0.023 18.470 hybrid contribution 1.123 1.113 0.002 1.581 sum -7.978 -14.959 -0.021 16.954 Atomic orbital electron populations 1.70003 1.06160 1.28251 1.44035 1.25455 0.95890 0.99114 0.95851 0.85657 0.78644 0.78845 0.79560 1.19229 1.20247 1.19235 1.21361 0.92666 0.79491 1.51766 0.88115 1.83962 1.38820 1.12935 1.73378 1.18974 0.84926 0.83309 0.81362 1.90678 1.13885 1.86861 1.52610 1.22374 0.87844 0.95272 1.10662 1.25136 1.00921 0.88543 0.96575 1.77885 0.89448 1.21806 1.22391 1.48231 1.05012 1.00711 1.53274 1.17414 0.79522 0.92069 1.02631 1.20837 0.98652 0.91935 1.00921 1.20873 0.89747 1.00536 0.99872 1.21017 0.86760 0.93291 1.05877 1.98377 1.25806 1.82701 1.96898 1.20947 0.97873 0.92609 0.99136 1.21078 0.89515 1.01874 0.99636 1.74137 1.18363 0.98568 1.11869 0.91662 0.76431 0.83256 0.83799 0.83555 0.82597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.31 13.67 55.49 0.76 -23.55 15 2 C 0.04 1.18 5.49 -17.52 -0.10 1.09 15 3 Si 0.95 20.56 29.55 -169.99 -5.02 15.54 15 4 H -0.27 -5.65 7.11 56.52 0.40 -5.24 15 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 15 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 15 7 C -0.38 -10.87 9.65 30.94 0.30 -10.57 15 8 H 0.10 2.87 6.86 -52.49 -0.36 2.51 15 9 O -0.19 -5.39 9.75 -21.72 -0.21 -5.60 15 10 C 0.47 11.84 7.91 34.54 0.27 12.11 15 11 O -0.54 -14.19 16.15 -19.28 -0.31 -14.50 15 12 C 0.00 0.09 7.12 -83.01 -0.59 -0.50 15 13 C 0.08 1.33 11.91 -16.89 -0.20 1.13 15 14 N -0.29 -4.69 11.90 30.86 0.37 -4.33 15 15 N -0.18 -3.14 4.44 32.49 0.14 -2.99 15 16 C 0.18 2.49 6.74 -83.59 -0.56 1.93 15 17 C -0.10 -1.15 9.65 -39.40 -0.38 -1.53 15 18 C -0.09 -0.84 9.82 -39.58 -0.39 -1.23 15 19 C -0.04 -0.41 6.32 -39.46 -0.25 -0.66 15 20 Cl -0.07 -0.59 28.95 -51.86 -1.50 -2.09 15 21 C -0.09 -0.90 9.82 -39.57 -0.39 -1.29 15 22 C -0.10 -1.30 9.61 -39.40 -0.38 -1.68 15 23 N -0.19 -3.80 11.29 33.27 0.38 -3.43 15 24 H 0.27 7.14 8.31 -40.82 -0.34 6.80 15 25 H 0.22 2.84 8.06 -52.49 -0.42 2.42 15 26 H 0.15 1.54 7.67 -52.48 -0.40 1.14 15 27 H 0.14 0.97 8.06 -52.48 -0.42 0.55 15 28 H 0.15 1.24 8.06 -52.49 -0.42 0.82 15 29 H 0.16 2.21 7.67 -52.49 -0.40 1.81 15 LS Contribution 295.74 15.07 4.46 4.46 Total: -1.00 -32.34 295.74 -5.18 -37.52 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -1.57 Total: 0.18 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -2.67 Total: -1.20 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 1.65 Total: -34.30 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.52 Total: -20.10 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.34 -5.18 -37.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751820104.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.383 kcal (2) G-P(sol) polarization free energy of solvation -32.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds