Wall clock time and date at job start Tue Mar 31 2020 06:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31425 * 1 3 3 Si 1.86796 * 119.99858 * 2 1 4 4 H 1.48501 * 109.47614 * 240.00381 * 3 2 1 5 5 H 1.48499 * 109.47522 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46909 * 120.00303 * 3 2 1 7 7 C 1.38792 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99916 * 179.97438 * 7 2 1 9 9 O 1.34862 * 120.00137 * 359.97438 * 7 2 1 10 10 C 1.34752 * 117.00075 * 180.02562 * 9 7 2 11 11 O 1.21518 * 119.99856 * 0.02562 * 10 9 7 12 12 C 1.47582 * 119.99908 * 180.02562 * 10 9 7 13 13 C 1.40672 * 126.05525 * 180.02562 * 12 10 9 14 14 N 1.31242 * 106.61767 * 179.72041 * 13 12 10 15 15 N 1.40100 * 107.19990 * 0.42600 * 14 13 12 16 16 C 1.40135 * 125.55745 * 179.82533 * 15 14 13 17 17 C 1.38867 * 120.05662 * 359.68400 * 16 15 14 18 18 C 1.38091 * 119.94383 * 180.02562 * 17 16 15 19 19 C 1.38399 * 120.05850 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 119.94324 * 179.97438 * 19 18 17 21 21 C 1.38402 * 120.10880 * 0.25985 * 19 18 17 22 22 C 1.38092 * 120.05709 * 359.48312 * 21 19 18 23 23 N 1.28707 * 108.88632 * 359.55243 * 15 14 13 24 24 H 0.97003 * 119.99929 * 359.97438 * 1 2 3 25 25 H 1.07996 * 126.68966 * 0.02562 * 13 12 10 26 26 H 1.08008 * 120.02402 * 0.02562 * 17 16 15 27 27 H 1.08007 * 119.96919 * 179.97438 * 18 17 16 28 28 H 1.07993 * 119.96894 * 179.72328 * 21 19 18 29 29 H 1.07997 * 120.03385 * 180.26021 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6966 -1.2125 5 1 1.2832 2.7465 0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0082 -1.2020 -0.0005 8 1 3.0882 -1.2020 -0.0010 9 8 1.3339 -2.3699 -0.0005 10 6 2.0678 -3.5001 -0.0005 11 8 3.2814 -3.4364 -0.0001 12 6 1.3978 -4.8150 -0.0011 13 6 2.0353 -6.0690 -0.0007 14 7 1.0843 -6.9735 0.0047 15 7 -0.1383 -6.2892 -0.0024 16 6 -1.4062 -6.8860 -0.0033 17 6 -1.5236 -8.2697 -0.0035 18 6 -2.7742 -8.8553 -0.0049 19 6 -3.9100 -8.0645 -0.0067 20 17 -5.4806 -8.8039 -0.0092 21 6 -3.7956 -6.6852 -0.0125 22 6 -2.5474 -6.0947 -0.0057 23 7 0.0930 -5.0231 -0.0021 24 1 -0.4850 0.8401 0.0004 25 1 3.0996 -6.2518 0.0005 26 1 -0.6375 -8.8873 -0.0025 27 1 -2.8660 -9.9315 -0.0055 28 1 -4.6834 -6.0703 -0.0184 29 1 -2.4586 -5.0184 -0.0060 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751820104.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:02 Heat of formation + Delta-G solvation = 38.585952 kcal Electronic energy + Delta-G solvation = -19463.034462 eV Core-core repulsion = 15993.909773 eV Total energy + Delta-G solvation = -3469.124689 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.035 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.90194 -40.96521 -40.39870 -37.63589 -37.34892 -34.90416 -34.40586 -33.64187 -32.28367 -30.69855 -27.88881 -26.06192 -24.91028 -23.66145 -22.56582 -21.87251 -19.95540 -19.55302 -18.78664 -17.84897 -17.72063 -16.99006 -16.65285 -16.41754 -16.22080 -15.85382 -15.35805 -14.73174 -14.65916 -14.64925 -13.78262 -13.61166 -13.29902 -13.14682 -12.92500 -12.83704 -12.42375 -12.29415 -12.16942 -12.08802 -11.88027 -11.87438 -11.42022 -11.22309 -10.73479 -10.32567 -9.43461 -8.58470 -6.37006 -0.81221 0.04007 0.34563 0.64607 0.65346 1.01592 1.36051 1.44965 1.53032 2.01190 2.03170 2.38412 2.38548 2.71117 2.97764 3.59490 3.62741 3.65065 3.90356 4.08887 4.22014 4.35366 4.59184 4.68404 4.76864 4.80378 4.96551 5.09630 5.13660 5.26148 5.61839 5.73971 6.40682 6.56245 6.84275 7.63929 8.61376 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.022890 B = 0.003359 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.955076 B = 8334.751420 C = 9547.861119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C -0.004 4.004 3 Si 1.025 2.975 4 H -0.258 1.258 5 H -0.261 1.261 6 H -0.258 1.258 7 C -0.420 4.420 8 H 0.094 0.906 9 O -0.222 6.222 10 C 0.477 3.523 11 O -0.556 6.556 12 C -0.034 4.034 13 C 0.094 3.906 14 N -0.276 5.276 15 N -0.165 5.165 16 C 0.131 3.869 17 C -0.090 4.090 18 C -0.078 4.078 19 C -0.033 4.033 20 Cl -0.049 7.049 21 C -0.083 4.083 22 C -0.109 4.109 23 N -0.204 5.204 24 H 0.281 0.719 25 H 0.253 0.747 26 H 0.162 0.838 27 H 0.179 0.821 28 H 0.165 0.835 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.668 -17.499 -0.029 19.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.205 4.205 3 Si 0.842 3.158 4 H -0.182 1.182 5 H -0.185 1.185 6 H -0.182 1.182 7 C -0.496 4.496 8 H 0.112 0.888 9 O -0.128 6.128 10 C 0.324 3.676 11 O -0.453 6.453 12 C -0.198 4.198 13 C -0.096 4.096 14 N -0.104 5.104 15 N -0.058 5.058 16 C 0.041 3.959 17 C -0.111 4.111 18 C -0.097 4.097 19 C -0.061 4.061 20 Cl -0.020 7.020 21 C -0.103 4.103 22 C -0.130 4.130 23 N -0.050 5.050 24 H 0.091 0.909 25 H 0.269 0.731 26 H 0.180 0.820 27 H 0.196 0.804 28 H 0.183 0.817 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.836 -18.001 -0.025 20.513 hybrid contribution 1.102 1.347 0.002 1.740 sum -8.734 -16.654 -0.023 18.805 Atomic orbital electron populations 1.70100 1.07941 1.29797 1.45241 1.26719 0.96921 1.02615 0.94258 0.84591 0.77532 0.73558 0.80095 1.18207 1.18523 1.18219 1.21638 0.92711 0.80468 1.54754 0.88825 1.83987 1.39850 1.13890 1.75077 1.19611 0.85033 0.84020 0.78969 1.90632 1.14555 1.87494 1.52592 1.21979 0.88658 0.94518 1.14634 1.25588 1.02388 0.86394 0.95201 1.77887 0.88908 1.21171 1.22404 1.48560 1.06406 0.99841 1.50978 1.17916 0.78409 0.93484 1.06112 1.21027 1.00033 0.90449 0.99557 1.21227 0.88495 1.02123 0.97887 1.21176 0.87804 0.93104 1.04018 1.98396 1.24690 1.82278 1.96665 1.21105 0.97365 0.93410 0.98371 1.21019 0.90500 1.01024 1.00507 1.74050 1.18534 1.00595 1.11793 0.90927 0.73115 0.82050 0.80387 0.81749 0.84710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.01 13.67 21.63 0.30 -52.71 15 2 C 0.00 -0.20 5.49 84.89 0.47 0.26 15 3 Si 1.02 42.58 29.55 68.60 2.03 44.60 15 4 H -0.26 -10.22 7.11 99.48 0.71 -9.52 15 5 H -0.26 -10.04 7.11 99.48 0.71 -9.34 15 6 H -0.26 -10.23 7.11 99.48 0.71 -9.52 15 7 C -0.42 -25.40 9.65 67.95 0.66 -24.74 15 8 H 0.09 5.58 6.86 -2.91 -0.02 5.56 15 9 O -0.22 -13.54 9.75 11.06 0.11 -13.43 15 10 C 0.48 25.18 7.91 70.29 0.56 25.73 15 11 O -0.56 -29.96 16.15 19.78 0.32 -29.64 15 12 C -0.03 -1.48 7.12 42.16 0.30 -1.18 15 13 C 0.09 3.09 11.91 85.38 1.02 4.11 15 14 N -0.28 -8.67 11.90 -56.28 -0.67 -9.34 15 15 N -0.16 -5.68 4.44 -51.13 -0.23 -5.91 15 16 C 0.13 3.63 6.74 38.12 0.26 3.89 15 17 C -0.09 -1.78 9.65 22.39 0.22 -1.57 15 18 C -0.08 -1.17 9.82 22.27 0.22 -0.95 15 19 C -0.03 -0.56 6.32 22.35 0.14 -0.42 15 20 Cl -0.05 -0.72 28.95 -2.72 -0.08 -0.80 15 21 C -0.08 -1.61 9.82 22.27 0.22 -1.39 15 22 C -0.11 -2.84 9.61 22.39 0.22 -2.63 15 23 N -0.20 -8.61 11.29 -48.64 -0.55 -9.16 15 24 H 0.28 15.05 8.31 -92.71 -0.77 14.28 15 25 H 0.25 6.12 8.06 -2.91 -0.02 6.10 15 26 H 0.16 2.83 7.67 -2.91 -0.02 2.81 15 27 H 0.18 1.50 8.06 -2.91 -0.02 1.48 15 28 H 0.16 2.51 8.06 -2.91 -0.02 2.49 15 29 H 0.13 4.07 7.67 -2.91 -0.02 4.04 15 Total: -1.00 -73.60 295.74 6.70 -66.89 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 1.22 Total: 8.37 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 4.26 Total: 1.11 kcal Atomic # 7 Polarization: -75.96 SS G_CDS: -1.15 Total: -77.11 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: 0.43 Total: -43.07 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.08 Total: -0.80 kcal Total: -73.60 6.70 -66.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751820104.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.480 kcal (2) G-P(sol) polarization free energy of solvation -73.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds