Wall clock time and date at job start Tue Mar 31 2020 06:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46492 * 109.47313 * 2 1 4 4 C 1.36794 * 119.99988 * 262.40086 * 3 2 1 5 5 H 1.07997 * 119.99819 * 200.12267 * 4 3 2 6 6 C 1.39064 * 119.99843 * 20.12143 * 4 3 2 7 7 N 1.31357 * 120.00374 * 23.07664 * 6 4 3 8 8 Si 1.86802 * 120.00161 * 203.07453 * 6 4 3 9 9 H 1.48510 * 109.46824 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47182 * 119.99620 * 8 6 4 11 11 H 1.48498 * 109.47284 * 240.00275 * 8 6 4 12 12 C 1.34779 * 120.00026 * 82.40402 * 3 2 1 13 13 O 1.21712 * 119.99821 * 183.67131 * 12 3 2 14 14 C 1.46809 * 120.00156 * 3.66563 * 12 3 2 15 15 C 1.35954 * 125.14818 * 172.34678 * 14 12 3 16 16 C 1.46211 * 106.07687 * 180.13543 * 15 14 12 17 17 C 1.39748 * 134.16979 * 179.90234 * 16 15 14 18 18 C 1.36622 * 119.73135 * 179.70419 * 17 16 15 19 19 C 1.38828 * 120.45273 * 359.95606 * 18 17 16 20 20 C 1.37916 * 120.73221 * 0.04089 * 19 18 17 21 21 Cl 1.73602 * 120.08180 * 179.97438 * 20 19 18 22 22 C 1.39112 * 119.84080 * 359.97438 * 20 19 18 23 23 O 1.34750 * 133.22853 * 179.97438 * 22 20 19 24 24 H 1.09006 * 109.46949 * 300.00001 * 1 2 3 25 25 H 1.08997 * 109.47435 * 59.99657 * 1 2 3 26 26 H 1.09000 * 109.47428 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46864 * 239.99524 * 2 1 3 28 28 H 1.09005 * 109.47112 * 120.00380 * 2 1 3 29 29 H 0.96994 * 120.00023 * 179.97438 * 7 6 4 30 30 H 1.08004 * 126.96616 * 359.78650 * 15 14 12 31 31 H 1.08000 * 120.13550 * 359.65106 * 17 16 15 32 32 H 1.08005 * 119.77123 * 179.97438 * 18 17 16 33 33 H 1.07995 * 119.63659 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3941 1.9737 -1.1743 5 1 3.0419 2.8377 -1.1600 6 6 1.9419 1.4636 -2.3864 7 7 0.8434 0.7445 -2.4275 8 14 2.8965 1.8010 -3.9562 9 1 4.0887 2.6291 -3.6422 10 1 3.3322 0.5147 -4.5568 11 1 2.0281 2.5272 -4.9173 12 6 2.0975 2.0679 1.1570 13 8 2.4395 3.2360 1.1491 14 6 1.7713 1.4071 2.4267 15 6 1.9548 1.9481 3.6604 16 6 1.4971 0.9410 4.6164 17 6 1.4252 0.8837 6.0108 18 6 0.9263 -0.2338 6.6182 19 6 0.4898 -1.3115 5.8596 20 6 0.5521 -1.2751 4.4823 21 17 0.0023 -2.6326 3.5503 22 6 1.0566 -0.1481 3.8417 23 8 1.2386 0.1730 2.5457 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.5278 0.3890 -3.2730 30 1 2.3621 2.9221 3.8884 31 1 1.7634 1.7190 6.6060 32 1 0.8707 -0.2789 7.6958 33 1 0.0974 -2.1881 6.3534 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753211841.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:25 Heat of formation + Delta-G solvation = 5.055398 kcal Electronic energy + Delta-G solvation = -21168.072589 eV Core-core repulsion = 17801.034250 eV Total energy + Delta-G solvation = -3367.038340 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.18433 -38.64858 -37.73035 -36.35573 -35.32475 -32.32613 -32.04627 -30.20803 -29.55499 -29.25234 -25.64461 -23.41770 -22.66660 -22.17139 -21.26911 -19.66204 -17.56543 -17.40983 -16.82302 -16.04402 -15.84286 -15.23557 -14.72609 -14.35814 -14.17456 -13.82062 -13.38284 -13.03085 -12.85340 -12.81075 -12.28144 -12.14324 -11.99048 -11.52956 -11.39140 -11.23012 -11.19072 -10.89479 -10.85611 -10.47048 -10.37071 -9.83277 -9.68886 -9.17743 -8.83464 -8.51440 -8.03205 -7.83678 -6.55523 -4.03568 0.74080 1.33396 2.13638 2.19975 2.88000 3.06304 3.15103 3.22019 3.63438 3.92401 4.07793 4.43384 4.73186 4.91353 4.93124 4.98266 5.17440 5.26192 5.58622 5.64589 5.87493 6.04764 6.10020 6.29318 6.37256 6.53075 6.55951 6.63191 6.66203 6.87292 7.11373 7.23652 7.28217 7.79421 7.88938 8.30382 8.92088 9.11779 9.71449 10.37396 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.024347 B = 0.005067 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.767967 B = 5524.876954 C = 6511.434362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.121 3.879 3 N -0.402 5.402 4 C -0.304 4.304 5 H 0.110 0.890 6 C 0.037 3.963 7 N -0.842 5.842 8 Si 0.928 3.072 9 H -0.264 1.264 10 H -0.277 1.277 11 H -0.278 1.278 12 C 0.485 3.515 13 O -0.573 6.573 14 C 0.042 3.958 15 C -0.177 4.177 16 C -0.113 4.113 17 C -0.069 4.069 18 C -0.131 4.131 19 C -0.096 4.096 20 C -0.021 4.021 21 Cl -0.062 7.062 22 C 0.049 3.951 23 O -0.161 6.161 24 H 0.025 0.975 25 H 0.110 0.890 26 H 0.036 0.964 27 H 0.084 0.916 28 H 0.054 0.946 29 H 0.274 0.726 30 H 0.165 0.835 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.347 -6.478 12.446 14.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.002 4.002 3 N -0.116 5.116 4 C -0.432 4.432 5 H 0.127 0.873 6 C -0.170 4.170 7 N -0.478 5.478 8 Si 0.754 3.246 9 H -0.188 1.188 10 H -0.202 1.202 11 H -0.204 1.204 12 C 0.274 3.726 13 O -0.460 6.460 14 C -0.009 4.009 15 C -0.199 4.199 16 C -0.114 4.114 17 C -0.087 4.087 18 C -0.150 4.150 19 C -0.115 4.115 20 C -0.048 4.048 21 Cl -0.033 7.033 22 C 0.000 4.000 23 O -0.061 6.061 24 H 0.044 0.956 25 H 0.128 0.872 26 H 0.055 0.945 27 H 0.102 0.898 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.183 0.817 31 H 0.149 0.851 32 H 0.152 0.848 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.417 -6.348 11.889 13.552 hybrid contribution 0.171 -0.154 -0.678 0.716 sum -1.246 -6.502 11.211 13.020 Atomic orbital electron populations 1.22321 0.95492 1.00244 1.03212 1.21492 0.95706 0.82608 1.00417 1.43871 1.50929 1.11166 1.05670 1.19889 1.26961 1.14750 0.81570 0.87274 1.25485 0.95010 0.96575 0.99933 1.69962 1.17260 1.33077 1.27508 0.85839 0.79993 0.78522 0.80290 1.18812 1.20241 1.20402 1.16466 0.88915 0.85989 0.81244 1.90707 1.55736 1.14865 1.84725 1.23037 0.98062 0.82345 0.97455 1.22438 1.07511 1.00699 0.89209 1.19922 1.03047 0.94133 0.94285 1.20399 0.98071 0.98424 0.91803 1.20622 1.01237 0.93107 0.99998 1.20777 1.00860 0.99984 0.89927 1.19719 1.05711 0.88001 0.91394 1.98378 1.88231 1.43314 1.73373 1.19486 1.01622 0.95189 0.83738 1.84610 1.66623 1.31483 1.23398 0.95580 0.87225 0.94477 0.89777 0.92807 0.91577 0.81732 0.85051 0.84784 0.84239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.20 37.16 0.34 -3.10 16 2 C 0.12 2.78 4.87 -4.05 -0.02 2.76 16 3 N -0.40 -10.34 2.63 -116.26 -0.31 -10.64 16 4 C -0.30 -8.12 9.24 -15.03 -0.14 -8.26 16 5 H 0.11 3.03 7.47 -52.49 -0.39 2.64 16 6 C 0.04 0.91 4.79 -17.45 -0.08 0.83 16 7 N -0.84 -20.76 8.64 55.50 0.48 -20.28 16 8 Si 0.93 19.28 29.61 -169.99 -5.03 14.25 16 9 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 10 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 11 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 12 C 0.48 12.37 7.53 -12.79 -0.10 12.27 16 13 O -0.57 -16.05 16.53 5.18 0.09 -15.97 16 14 C 0.04 0.91 6.49 -36.94 -0.24 0.67 16 15 C -0.18 -3.33 10.82 -37.20 -0.40 -3.73 16 16 C -0.11 -1.86 6.38 -105.19 -0.67 -2.53 16 17 C -0.07 -0.86 10.06 -39.60 -0.40 -1.26 16 18 C -0.13 -1.40 9.98 -39.95 -0.40 -1.80 16 19 C -0.10 -1.13 9.79 -39.48 -0.39 -1.51 16 20 C -0.02 -0.31 6.33 -39.37 -0.25 -0.56 16 21 Cl -0.06 -0.89 28.96 -51.86 -1.50 -2.39 16 22 C 0.05 0.87 7.20 -38.32 -0.28 0.59 16 23 O -0.16 -3.25 5.76 2.68 0.02 -3.24 16 24 H 0.03 0.57 6.83 -51.93 -0.35 0.22 16 25 H 0.11 2.69 5.52 -51.93 -0.29 2.40 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.08 2.00 6.56 -51.93 -0.34 1.66 16 28 H 0.05 1.18 5.52 -51.93 -0.29 0.89 16 29 H 0.27 6.29 8.31 -40.82 -0.34 5.95 16 30 H 0.17 2.86 8.06 -52.48 -0.42 2.44 16 31 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 33 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 296.69 15.07 4.47 4.47 Total: -1.00 -28.68 296.69 -7.72 -36.40 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -2.91 Total: 3.03 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -3.02 Total: -5.63 kcal Atomic # 7 Polarization: -31.10 SS G_CDS: 0.17 Total: -30.92 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: 0.10 Total: -19.21 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.03 Total: 14.25 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.39 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.68 -7.72 -36.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753211841.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.456 kcal (2) G-P(sol) polarization free energy of solvation -28.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds