Wall clock time and date at job start Tue Mar 31 2020 06:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46492 * 109.47313 * 2 1 4 4 C 1.36794 * 119.99988 * 262.40086 * 3 2 1 5 5 H 1.07997 * 119.99819 * 200.12267 * 4 3 2 6 6 C 1.39064 * 119.99843 * 20.12143 * 4 3 2 7 7 N 1.31357 * 120.00374 * 23.07664 * 6 4 3 8 8 Si 1.86802 * 120.00161 * 203.07453 * 6 4 3 9 9 H 1.48510 * 109.46824 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47182 * 119.99620 * 8 6 4 11 11 H 1.48498 * 109.47284 * 240.00275 * 8 6 4 12 12 C 1.34779 * 120.00026 * 82.40402 * 3 2 1 13 13 O 1.21712 * 119.99821 * 183.67131 * 12 3 2 14 14 C 1.46809 * 120.00156 * 3.66563 * 12 3 2 15 15 C 1.35954 * 125.14818 * 172.34678 * 14 12 3 16 16 C 1.46211 * 106.07687 * 180.13543 * 15 14 12 17 17 C 1.39748 * 134.16979 * 179.90234 * 16 15 14 18 18 C 1.36622 * 119.73135 * 179.70419 * 17 16 15 19 19 C 1.38828 * 120.45273 * 359.95606 * 18 17 16 20 20 C 1.37916 * 120.73221 * 0.04089 * 19 18 17 21 21 Cl 1.73602 * 120.08180 * 179.97438 * 20 19 18 22 22 C 1.39112 * 119.84080 * 359.97438 * 20 19 18 23 23 O 1.34750 * 133.22853 * 179.97438 * 22 20 19 24 24 H 1.09006 * 109.46949 * 300.00001 * 1 2 3 25 25 H 1.08997 * 109.47435 * 59.99657 * 1 2 3 26 26 H 1.09000 * 109.47428 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46864 * 239.99524 * 2 1 3 28 28 H 1.09005 * 109.47112 * 120.00380 * 2 1 3 29 29 H 0.96994 * 120.00023 * 179.97438 * 7 6 4 30 30 H 1.08004 * 126.96616 * 359.78650 * 15 14 12 31 31 H 1.08000 * 120.13550 * 359.65106 * 17 16 15 32 32 H 1.08005 * 119.77123 * 179.97438 * 18 17 16 33 33 H 1.07995 * 119.63659 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3941 1.9737 -1.1743 5 1 3.0419 2.8377 -1.1600 6 6 1.9419 1.4636 -2.3864 7 7 0.8434 0.7445 -2.4275 8 14 2.8965 1.8010 -3.9562 9 1 4.0887 2.6291 -3.6422 10 1 3.3322 0.5147 -4.5568 11 1 2.0281 2.5272 -4.9173 12 6 2.0975 2.0679 1.1570 13 8 2.4395 3.2360 1.1491 14 6 1.7713 1.4071 2.4267 15 6 1.9548 1.9481 3.6604 16 6 1.4971 0.9410 4.6164 17 6 1.4252 0.8837 6.0108 18 6 0.9263 -0.2338 6.6182 19 6 0.4898 -1.3115 5.8596 20 6 0.5521 -1.2751 4.4823 21 17 0.0023 -2.6326 3.5503 22 6 1.0566 -0.1481 3.8417 23 8 1.2386 0.1730 2.5457 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.5278 0.3890 -3.2730 30 1 2.3621 2.9221 3.8884 31 1 1.7634 1.7190 6.6060 32 1 0.8707 -0.2789 7.6958 33 1 0.0974 -2.1881 6.3534 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753211841.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:24 Heat of formation + Delta-G solvation = -10.579597 kcal Electronic energy + Delta-G solvation = -21168.750573 eV Core-core repulsion = 17801.034250 eV Total energy + Delta-G solvation = -3367.716324 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.56002 -40.42111 -38.96632 -37.47130 -37.24407 -33.99814 -33.62002 -31.50174 -31.24067 -30.61065 -27.43374 -24.94427 -24.16534 -23.64475 -22.59554 -21.28564 -19.22376 -18.85843 -18.47576 -17.44788 -17.12900 -17.02983 -16.05208 -15.95296 -15.63011 -15.42276 -14.98432 -14.74353 -14.26974 -14.06252 -13.89453 -13.75522 -13.33477 -13.05621 -12.89180 -12.74947 -12.60620 -12.32855 -12.26908 -12.11600 -11.97992 -11.65281 -11.08332 -10.99962 -10.81569 -9.86318 -9.70279 -9.20348 -8.43252 -6.04853 -0.47907 0.22276 0.76832 1.04395 1.38796 1.42387 1.50938 1.58117 2.20478 2.23454 2.58148 2.78584 2.98662 3.43809 3.59673 3.90089 4.03531 4.19884 4.25123 4.41596 4.46129 4.61976 4.68923 4.80923 4.96224 5.07946 5.11889 5.24850 5.25657 5.29753 5.36091 5.57092 5.85142 5.88911 6.00629 6.40020 6.97532 7.19907 7.78288 8.49724 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.024347 B = 0.005067 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.767967 B = 5524.876954 C = 6511.434362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.131 3.869 3 N -0.416 5.416 4 C -0.352 4.352 5 H 0.084 0.916 6 C 0.010 3.990 7 N -0.856 5.856 8 Si 0.995 3.005 9 H -0.271 1.271 10 H -0.262 1.262 11 H -0.271 1.271 12 C 0.478 3.522 13 O -0.615 6.615 14 C -0.005 4.005 15 C -0.150 4.150 16 C -0.135 4.135 17 C -0.059 4.059 18 C -0.115 4.115 19 C -0.070 4.070 20 C -0.046 4.046 21 Cl -0.065 7.065 22 C 0.028 3.972 23 O -0.176 6.176 24 H 0.017 0.983 25 H 0.088 0.912 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.282 0.718 30 H 0.173 0.827 31 H 0.164 0.836 32 H 0.185 0.815 33 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.876 -8.077 15.419 17.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.008 3.992 3 N -0.130 5.130 4 C -0.480 4.480 5 H 0.101 0.899 6 C -0.195 4.195 7 N -0.491 5.491 8 Si 0.817 3.183 9 H -0.195 1.195 10 H -0.187 1.187 11 H -0.197 1.197 12 C 0.268 3.732 13 O -0.506 6.506 14 C -0.055 4.055 15 C -0.172 4.172 16 C -0.136 4.136 17 C -0.077 4.077 18 C -0.132 4.132 19 C -0.089 4.089 20 C -0.073 4.073 21 Cl -0.036 7.036 22 C -0.021 4.021 23 O -0.078 6.078 24 H 0.036 0.964 25 H 0.106 0.894 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.190 0.810 31 H 0.181 0.819 32 H 0.202 0.798 33 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -1.969 -7.982 14.873 16.994 hybrid contribution 0.248 0.251 -1.235 1.284 sum -1.721 -7.731 13.638 15.771 Atomic orbital electron populations 1.22124 0.94919 1.00997 1.01609 1.21432 0.95998 0.81544 1.00198 1.44026 1.51390 1.11938 1.05637 1.19822 1.29076 1.15923 0.83129 0.89853 1.26241 0.95363 0.95899 1.02045 1.70028 1.17479 1.32961 1.28659 0.84871 0.78299 0.78756 0.76329 1.19542 1.18705 1.19670 1.16953 0.87839 0.85846 0.82520 1.90632 1.57297 1.16618 1.86027 1.22264 1.02498 0.84246 0.96479 1.22744 1.04358 1.00942 0.89109 1.20068 1.04642 0.93006 0.95883 1.20889 0.96651 1.00194 0.89967 1.21229 0.98391 0.91275 1.02331 1.21401 0.97730 1.01301 0.88444 1.20059 1.07149 0.87528 0.92585 1.98375 1.88286 1.43108 1.73862 1.20013 1.02546 0.96770 0.82805 1.84465 1.67266 1.30692 1.25345 0.96374 0.89357 0.92423 0.90912 0.91853 0.90795 0.80967 0.81866 0.79767 0.80596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.37 9.20 71.98 0.66 -5.71 16 2 C 0.13 6.30 4.87 86.38 0.42 6.72 16 3 N -0.42 -22.75 2.63 -639.95 -1.68 -24.43 16 4 C -0.35 -20.02 9.24 84.12 0.78 -19.24 16 5 H 0.08 5.02 7.47 -2.91 -0.02 5.00 16 6 C 0.01 0.53 4.79 84.96 0.41 0.93 16 7 N -0.86 -43.30 8.64 21.68 0.19 -43.12 16 8 Si 1.00 40.53 29.61 68.60 2.03 42.56 16 9 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 10 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 11 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 12 C 0.48 26.00 7.53 86.48 0.65 26.66 16 13 O -0.62 -36.90 16.53 -4.39 -0.07 -36.97 16 14 C 0.00 -0.22 6.49 23.98 0.16 -0.06 16 15 C -0.15 -5.69 10.82 23.81 0.26 -5.43 16 16 C -0.13 -4.20 6.38 -20.24 -0.13 -4.32 16 17 C -0.06 -1.21 10.06 22.26 0.22 -0.98 16 18 C -0.11 -1.71 9.98 22.03 0.22 -1.49 16 19 C -0.07 -1.28 9.79 22.33 0.22 -1.06 16 20 C -0.05 -1.26 6.33 22.40 0.14 -1.11 16 21 Cl -0.07 -1.77 28.96 -2.72 -0.08 -1.85 16 22 C 0.03 0.94 7.20 23.09 0.17 1.11 16 23 O -0.18 -7.31 5.76 -13.33 -0.08 -7.38 16 24 H 0.02 0.82 6.83 -2.38 -0.02 0.80 16 25 H 0.09 4.49 5.52 -2.39 -0.01 4.47 16 26 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.07 3.60 6.56 -2.39 -0.02 3.59 16 28 H 0.06 2.90 5.52 -2.38 -0.01 2.89 16 29 H 0.28 13.05 8.31 -92.71 -0.77 12.28 16 30 H 0.17 6.04 8.06 -2.91 -0.02 6.02 16 31 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 32 H 0.19 1.08 8.06 -2.91 -0.02 1.06 16 33 H 0.18 1.97 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -68.02 296.69 5.64 -62.38 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 1.16 Total: 12.80 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 4.17 Total: -4.00 kcal Atomic # 7 Polarization: -66.05 SS G_CDS: -1.49 Total: -67.54 kcal Atomic # 8 Polarization: -44.21 SS G_CDS: -0.15 Total: -44.36 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -0.08 Total: -1.85 kcal Total: -68.02 5.64 -62.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753211841.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.800 kcal (2) G-P(sol) polarization free energy of solvation -68.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds