Wall clock time and date at job start Tue Mar 31 2020 06:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39365 * 120.08788 * 352.50283 * 3 2 1 5 5 C 1.39353 * 119.70651 * 180.30217 * 4 3 2 6 6 C 1.47688 * 120.05656 * 179.97438 * 5 4 3 7 7 O 1.21473 * 120.00101 * 0.03338 * 6 5 4 8 8 O 1.34718 * 119.99460 * 180.02562 * 6 5 4 9 9 C 1.45199 * 116.99456 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47202 * 179.97438 * 9 8 6 11 11 C 1.52993 * 109.47370 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.47284 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99523 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00148 * 180.02562 * 12 11 10 15 15 N 1.31511 * 119.99897 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00157 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47033 * 59.99788 * 16 14 12 18 18 H 1.48494 * 109.47438 * 179.97438 * 16 14 12 19 19 H 1.48508 * 109.47011 * 299.99905 * 16 14 12 20 20 C 1.39813 * 119.88096 * 359.97438 * 5 4 3 21 21 C 1.37941 * 120.17849 * 359.97438 * 20 5 4 22 22 C 1.38292 * 120.29502 * 0.02562 * 21 20 5 23 23 Cl 1.73602 * 119.94594 * 179.97438 * 22 21 20 24 24 H 1.07995 * 120.14497 * 0.26980 * 4 3 2 25 25 H 1.08996 * 109.47716 * 300.00338 * 9 8 6 26 26 H 1.09006 * 109.47107 * 60.00168 * 9 8 6 27 27 H 1.08996 * 109.47263 * 300.00863 * 10 9 8 28 28 H 1.09006 * 109.46751 * 60.00197 * 10 9 8 29 29 H 1.09004 * 109.47335 * 300.00262 * 11 10 9 30 30 H 1.09006 * 109.47172 * 60.00272 * 11 10 9 31 31 H 0.97002 * 119.99846 * 180.02562 * 15 14 12 32 32 H 1.08004 * 119.91001 * 179.97438 * 20 5 4 33 33 H 1.07996 * 119.85769 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2672 -1.1946 0.1573 5 6 4.6607 -1.1840 0.1625 6 6 5.4094 -2.4460 0.3292 7 8 4.8106 -3.4946 0.4615 8 8 6.7566 -2.4342 0.3345 9 6 7.4262 -3.7114 0.5034 10 6 8.9413 -3.4996 0.4830 11 6 9.6469 -4.8455 0.6603 12 6 11.1393 -4.6367 0.6408 13 1 11.5440 -3.6433 0.5149 14 6 11.9881 -5.7139 0.7836 15 7 11.4953 -6.9234 0.9373 16 14 13.8379 -5.4550 0.7601 17 1 14.2244 -4.5444 1.8677 18 1 14.5228 -6.7613 0.9321 19 1 14.2371 -4.8533 -0.5376 20 6 5.3486 0.0236 0.0095 21 6 4.6517 1.2037 -0.1470 22 6 3.2688 1.2016 -0.1532 23 17 2.4008 2.6921 -0.3501 24 1 2.7315 -2.1248 0.2753 25 1 7.1334 -4.1521 1.4564 26 1 7.1423 -4.3807 -0.3088 27 1 9.2338 -3.0592 -0.4702 28 1 9.2255 -2.8302 1.2949 29 1 9.3545 -5.2863 1.6134 30 1 9.3627 -5.5146 -0.1520 31 1 12.0924 -7.6812 1.0382 32 1 6.4286 0.0324 0.0138 33 1 5.1883 2.1334 -0.2652 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754918250.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:47 Heat of formation + Delta-G solvation = -52.989460 kcal Electronic energy + Delta-G solvation = -18984.634992 eV Core-core repulsion = 15615.079638 eV Total energy + Delta-G solvation = -3369.555354 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.84010 -39.55246 -37.21112 -36.90551 -36.55289 -34.08040 -32.31586 -31.93053 -31.52685 -27.30148 -24.97436 -24.60935 -23.08602 -21.54688 -20.47074 -19.48304 -17.55695 -17.20608 -16.66930 -16.47822 -16.24829 -15.91933 -14.92888 -14.77970 -14.51319 -14.15422 -13.75790 -13.68129 -13.31286 -13.26232 -12.78095 -12.39926 -12.37872 -12.20977 -11.97252 -11.93782 -11.56759 -11.00408 -10.83622 -10.72258 -10.58410 -10.50412 -9.81125 -9.76987 -9.58052 -9.50105 -9.23098 -8.42731 -6.07594 -4.11053 -0.20063 0.26279 1.29766 1.92246 2.11640 2.55945 2.66774 3.22226 3.25517 3.29471 3.34397 3.36353 4.01041 4.31432 4.38890 4.43076 4.51166 4.71042 5.10300 5.27344 5.28436 5.37803 5.47750 5.50275 5.56269 5.84420 5.91467 6.30522 6.45256 6.70078 6.89873 6.96263 7.54464 7.65072 7.65908 7.90063 8.30513 8.94935 9.53531 11.03738 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.036696 B = 0.002350 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.838744 B =11910.001924 C =12647.085057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C 0.251 3.749 3 C -0.029 4.029 4 C 0.002 3.998 5 C -0.113 4.113 6 C 0.504 3.496 7 O -0.500 6.500 8 O -0.350 6.350 9 C 0.069 3.931 10 C -0.109 4.109 11 C 0.024 3.976 12 C -0.523 4.523 13 H 0.057 0.943 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.896 3.104 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.019 4.019 21 C -0.120 4.120 22 C 0.030 3.970 23 Cl -0.042 7.042 24 H 0.159 0.841 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.263 0.737 32 H 0.162 0.838 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.340 18.173 -2.435 23.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.066 5.066 2 C -0.065 4.065 3 C -0.034 4.034 4 C -0.019 4.019 5 C -0.115 4.115 6 C 0.347 3.653 7 O -0.389 6.389 8 O -0.267 6.267 9 C -0.004 4.004 10 C -0.147 4.147 11 C -0.013 4.013 12 C -0.561 4.561 13 H 0.075 0.925 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.723 3.277 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.038 4.038 21 C -0.138 4.138 22 C 0.001 3.999 23 Cl -0.013 7.013 24 H 0.176 0.824 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.072 0.928 32 H 0.180 0.820 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -17.270 17.773 -2.384 24.896 hybrid contribution 1.367 -0.014 0.005 1.367 sum -15.903 17.759 -2.379 23.957 Atomic orbital electron populations 1.81263 1.11525 1.06200 1.07619 1.25179 0.92133 0.94654 0.94561 1.15563 0.85149 0.92899 1.09752 1.21297 0.92518 0.97325 0.90765 1.19196 0.92623 0.92486 1.07156 1.20797 0.82199 0.88372 0.73892 1.90871 1.70176 1.32836 1.45030 1.86519 1.18739 1.39145 1.82266 1.23618 0.93936 0.80665 1.02145 1.21784 0.88441 1.02349 1.02083 1.19051 0.94819 0.89839 0.97605 1.21117 0.91001 0.93671 1.50355 0.92457 1.25029 0.99078 0.95186 0.95148 1.69949 1.35220 0.98693 1.49437 0.86603 0.85106 0.77328 0.78648 1.20168 1.21268 1.20162 1.21827 1.02159 0.89915 0.89857 1.21082 0.90865 1.00199 1.01687 1.21297 0.92937 0.86811 0.98875 1.98435 1.76296 1.31532 1.95004 0.82359 0.91158 0.91165 0.92013 0.92012 0.96201 0.96196 0.92786 0.82032 0.82642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -4.58 18.54 41.84 0.78 -3.80 16 2 C 0.25 2.42 14.36 -22.47 -0.32 2.10 16 3 C -0.03 -0.23 5.73 -106.93 -0.61 -0.84 16 4 C 0.00 0.01 9.30 -38.75 -0.36 -0.35 16 5 C -0.11 -1.03 5.87 -105.03 -0.62 -1.64 16 6 C 0.50 6.48 7.89 34.59 0.27 6.75 16 7 O -0.50 -7.83 16.13 -19.24 -0.31 -8.14 16 8 O -0.35 -4.89 9.46 -40.54 -0.38 -5.27 16 9 C 0.07 1.13 5.48 37.16 0.20 1.34 16 10 C -0.11 -2.06 5.53 -26.73 -0.15 -2.21 16 11 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 12 C -0.52 -14.18 9.11 -34.44 -0.31 -14.49 16 13 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 16 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 C -0.02 -0.12 9.61 -39.10 -0.38 -0.50 16 21 C -0.12 -0.64 9.80 -39.67 -0.39 -1.03 16 22 C 0.03 0.21 6.36 -38.95 -0.25 -0.04 16 23 Cl -0.04 -0.30 28.01 -51.86 -1.45 -1.75 16 24 H 0.16 1.27 7.64 -52.49 -0.40 0.87 16 25 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 26 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.16 0.90 7.60 -52.48 -0.40 0.51 16 33 H 0.16 0.46 8.06 -52.49 -0.42 0.04 16 LS Contribution 323.92 15.07 4.88 4.88 Total: -1.00 -30.97 323.92 -7.22 -38.18 By element: Atomic # 1 Polarization: -2.34 SS G_CDS: -3.30 Total: -5.64 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -3.14 Total: -8.97 kcal Atomic # 7 Polarization: -30.74 SS G_CDS: 1.51 Total: -29.23 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.69 Total: -13.41 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.45 Total: -1.75 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.97 -7.22 -38.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754918250.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.806 kcal (2) G-P(sol) polarization free energy of solvation -30.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds