Wall clock time and date at job start Tue Mar 31 2020 06:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39365 * 120.08788 * 352.50283 * 3 2 1 5 5 C 1.39353 * 119.70651 * 180.30217 * 4 3 2 6 6 C 1.47688 * 120.05656 * 179.97438 * 5 4 3 7 7 O 1.21473 * 120.00101 * 0.03338 * 6 5 4 8 8 O 1.34718 * 119.99460 * 180.02562 * 6 5 4 9 9 C 1.45199 * 116.99456 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47202 * 179.97438 * 9 8 6 11 11 C 1.52993 * 109.47370 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.47284 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99523 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00148 * 180.02562 * 12 11 10 15 15 N 1.31511 * 119.99897 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00157 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47033 * 59.99788 * 16 14 12 18 18 H 1.48494 * 109.47438 * 179.97438 * 16 14 12 19 19 H 1.48508 * 109.47011 * 299.99905 * 16 14 12 20 20 C 1.39813 * 119.88096 * 359.97438 * 5 4 3 21 21 C 1.37941 * 120.17849 * 359.97438 * 20 5 4 22 22 C 1.38292 * 120.29502 * 0.02562 * 21 20 5 23 23 Cl 1.73602 * 119.94594 * 179.97438 * 22 21 20 24 24 H 1.07995 * 120.14497 * 0.26980 * 4 3 2 25 25 H 1.08996 * 109.47716 * 300.00338 * 9 8 6 26 26 H 1.09006 * 109.47107 * 60.00168 * 9 8 6 27 27 H 1.08996 * 109.47263 * 300.00863 * 10 9 8 28 28 H 1.09006 * 109.46751 * 60.00197 * 10 9 8 29 29 H 1.09004 * 109.47335 * 300.00262 * 11 10 9 30 30 H 1.09006 * 109.47172 * 60.00272 * 11 10 9 31 31 H 0.97002 * 119.99846 * 180.02562 * 15 14 12 32 32 H 1.08004 * 119.91001 * 179.97438 * 20 5 4 33 33 H 1.07996 * 119.85769 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2672 -1.1946 0.1573 5 6 4.6607 -1.1840 0.1625 6 6 5.4094 -2.4460 0.3292 7 8 4.8106 -3.4946 0.4615 8 8 6.7566 -2.4342 0.3345 9 6 7.4262 -3.7114 0.5034 10 6 8.9413 -3.4996 0.4830 11 6 9.6469 -4.8455 0.6603 12 6 11.1393 -4.6367 0.6408 13 1 11.5440 -3.6433 0.5149 14 6 11.9881 -5.7139 0.7836 15 7 11.4953 -6.9234 0.9373 16 14 13.8379 -5.4550 0.7601 17 1 14.2244 -4.5444 1.8677 18 1 14.5228 -6.7613 0.9321 19 1 14.2371 -4.8533 -0.5376 20 6 5.3486 0.0236 0.0095 21 6 4.6517 1.2037 -0.1470 22 6 3.2688 1.2016 -0.1532 23 17 2.4008 2.6921 -0.3501 24 1 2.7315 -2.1248 0.2753 25 1 7.1334 -4.1521 1.4564 26 1 7.1423 -4.3807 -0.3088 27 1 9.2338 -3.0592 -0.4702 28 1 9.2255 -2.8302 1.2949 29 1 9.3545 -5.2863 1.6134 30 1 9.3627 -5.5146 -0.1520 31 1 12.0924 -7.6812 1.0382 32 1 6.4286 0.0324 0.0138 33 1 5.1883 2.1334 -0.2652 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754918250.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:46 Heat of formation + Delta-G solvation = -68.638393 kcal Electronic energy + Delta-G solvation = -18985.313581 eV Core-core repulsion = 15615.079638 eV Total energy + Delta-G solvation = -3370.233942 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.76941 -40.36817 -37.95550 -37.72926 -37.56665 -35.89848 -33.72133 -32.81533 -32.43357 -29.02169 -26.08593 -25.32820 -24.53645 -22.40223 -22.10823 -20.40528 -18.71125 -18.24883 -17.81256 -17.66878 -17.36014 -16.80093 -16.44891 -15.79474 -15.42150 -15.34240 -14.86928 -14.41768 -14.21048 -14.07239 -14.06484 -13.80307 -13.74720 -13.47855 -12.92339 -12.79324 -12.67805 -12.51132 -12.35417 -12.12908 -12.04035 -11.87900 -11.43042 -11.35996 -11.21627 -10.52935 -10.34369 -10.14747 -8.18288 -6.29353 -0.85403 -0.35955 0.72671 1.13546 1.29830 1.44877 1.47563 1.54709 1.58014 1.84116 2.44233 2.52873 2.54413 3.16076 3.40396 3.47047 3.80356 3.90424 4.06326 4.07220 4.11582 4.45722 4.53027 4.65377 4.80846 4.86887 4.93262 5.01755 5.14087 5.31288 5.38609 5.55078 5.69857 5.84991 6.21257 6.22928 6.58387 6.87355 7.40271 8.93593 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.036696 B = 0.002350 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.838744 B =11910.001924 C =12647.085057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.269 3.731 3 C -0.035 4.035 4 C 0.007 3.993 5 C -0.126 4.126 6 C 0.506 3.494 7 O -0.534 6.534 8 O -0.343 6.343 9 C 0.079 3.921 10 C -0.093 4.093 11 C 0.024 3.976 12 C -0.541 4.541 13 H 0.068 0.932 14 C -0.002 4.002 15 N -0.935 5.935 16 Si 0.967 3.033 17 H -0.265 1.265 18 H -0.287 1.287 19 H -0.265 1.265 20 C -0.002 4.002 21 C -0.103 4.103 22 C 0.037 3.963 23 Cl -0.041 7.041 24 H 0.154 0.846 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.071 0.929 29 H -0.004 1.004 30 H -0.004 1.004 31 H 0.263 0.737 32 H 0.179 0.821 33 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.208 20.798 -2.771 25.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.107 5.107 2 C -0.046 4.046 3 C -0.040 4.040 4 C -0.014 4.014 5 C -0.128 4.128 6 C 0.352 3.648 7 O -0.426 6.426 8 O -0.259 6.259 9 C 0.005 3.995 10 C -0.131 4.131 11 C -0.013 4.013 12 C -0.579 4.579 13 H 0.086 0.914 14 C -0.200 4.200 15 N -0.575 5.575 16 Si 0.791 3.209 17 H -0.190 1.190 18 H -0.213 1.213 19 H -0.190 1.190 20 C -0.021 4.021 21 C -0.121 4.121 22 C 0.008 3.992 23 Cl -0.011 7.011 24 H 0.172 0.828 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.014 0.986 30 H 0.014 0.986 31 H 0.072 0.928 32 H 0.196 0.804 33 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -16.149 20.432 -2.724 26.186 hybrid contribution 0.964 -0.770 0.101 1.237 sum -15.185 19.663 -2.623 24.982 Atomic orbital electron populations 1.81277 1.12711 1.07479 1.09252 1.25396 0.92369 0.93477 0.93356 1.15477 0.84140 0.93313 1.11041 1.21194 0.92308 0.97399 0.90453 1.18959 0.92462 0.91572 1.09775 1.21399 0.81486 0.89359 0.72567 1.90862 1.70447 1.34455 1.46787 1.86484 1.19616 1.37284 1.82526 1.23202 0.92815 0.81693 1.01750 1.21452 0.89574 0.99134 1.02893 1.18948 0.94682 0.92354 0.95363 1.21619 0.92426 0.94162 1.49653 0.91407 1.26001 1.04372 0.94874 0.94767 1.70093 1.37014 0.99661 1.50738 0.85474 0.78819 0.77315 0.79292 1.18995 1.21312 1.18979 1.22013 1.02924 0.89090 0.88052 1.21373 0.90011 1.00950 0.99754 1.21435 0.93570 0.86316 0.97901 1.98448 1.76462 1.31312 1.94887 0.82795 0.91703 0.91714 0.91044 0.91041 0.98585 0.98579 0.92794 0.80391 0.79340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -10.06 18.54 19.00 0.35 -9.71 16 2 C 0.27 5.02 14.36 88.33 1.27 6.29 16 3 C -0.04 -0.50 5.73 -21.36 -0.12 -0.63 16 4 C 0.01 0.11 9.30 22.81 0.21 0.32 16 5 C -0.13 -2.06 5.87 -20.13 -0.12 -2.18 16 6 C 0.51 12.58 7.89 70.32 0.56 13.13 16 7 O -0.53 -16.86 16.13 19.92 0.32 -16.54 16 8 O -0.34 -9.08 9.46 -56.27 -0.53 -9.61 16 9 C 0.08 2.57 5.48 71.98 0.39 2.96 16 10 C -0.09 -3.45 5.53 30.59 0.17 -3.28 16 11 C 0.02 1.18 4.97 29.85 0.15 1.33 16 12 C -0.54 -29.23 9.11 25.60 0.23 -29.00 16 13 H 0.07 3.44 7.74 -2.91 -0.02 3.41 16 14 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 15 N -0.93 -55.69 13.29 21.45 0.28 -55.40 16 16 Si 0.97 42.60 29.54 68.60 2.03 44.63 16 17 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 18 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 20 C 0.00 -0.02 9.61 22.58 0.22 0.20 16 21 C -0.10 -0.70 9.80 22.21 0.22 -0.48 16 22 C 0.04 0.41 6.36 22.68 0.14 0.55 16 23 Cl -0.04 -0.48 28.01 -2.72 -0.08 -0.56 16 24 H 0.15 2.48 7.64 -2.91 -0.02 2.46 16 25 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 27 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 29 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 30 H 0.00 -0.23 8.14 -2.38 -0.02 -0.24 16 31 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 32 H 0.18 1.25 7.60 -2.91 -0.02 1.23 16 33 H 0.19 0.12 8.06 -2.91 -0.02 0.10 16 Total: -1.00 -67.62 323.92 7.30 -60.32 By element: Atomic # 1 Polarization: -3.83 SS G_CDS: 1.14 Total: -2.68 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 3.78 Total: -10.45 kcal Atomic # 7 Polarization: -65.75 SS G_CDS: 0.64 Total: -65.11 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.21 Total: -26.15 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -0.08 Total: -0.56 kcal Total: -67.62 7.30 -60.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754918250.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.316 kcal (2) G-P(sol) polarization free energy of solvation -67.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds