Wall clock time and date at job start Tue Mar 31 2020 06:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46494 * 119.99953 * 2 1 4 4 C 1.50706 * 109.46888 * 269.99605 * 3 2 1 5 5 H 1.07998 * 119.99922 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99734 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00421 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99781 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47144 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47122 * 120.00116 * 8 6 4 11 11 H 1.48493 * 109.47426 * 240.00192 * 8 6 4 12 12 C 1.38001 * 119.99653 * 179.97438 * 2 1 3 13 13 N 1.28899 * 124.81167 * 179.97438 * 12 2 1 14 14 C 1.34816 * 117.87595 * 179.75594 * 13 12 2 15 15 C 1.41097 * 128.73718 * 179.65287 * 14 13 12 16 16 C 1.37201 * 120.43702 * 180.36004 * 15 14 13 17 17 C 1.38712 * 120.59974 * 0.25796 * 16 15 14 18 18 N 1.48025 * 120.01542 * 180.02562 * 17 16 15 19 19 O 1.21800 * 120.00084 * 0.02562 * 18 17 16 20 20 O 1.21802 * 120.00237 * 179.97438 * 18 17 16 21 21 C 1.37727 * 119.97471 * 0.02562 * 17 16 15 22 22 C 1.39261 * 120.20005 * 359.97438 * 21 17 16 23 23 S 1.75803 * 124.82062 * 359.97438 * 12 2 1 24 24 H 1.09001 * 109.47331 * 270.00087 * 1 2 3 25 25 H 1.08998 * 109.47194 * 30.00494 * 1 2 3 26 26 H 1.09002 * 109.46893 * 150.00428 * 1 2 3 27 27 H 1.09004 * 109.47539 * 29.99577 * 3 2 1 28 28 H 1.08998 * 109.47199 * 150.00056 * 3 2 1 29 29 H 0.96996 * 120.00125 * 180.02562 * 7 6 4 30 30 H 1.08002 * 119.78405 * 0.64275 * 15 14 13 31 31 H 1.08000 * 119.70133 * 180.27401 * 16 15 14 32 32 H 1.08002 * 119.89928 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4209 5 1 2.0975 1.0960 -2.2417 6 6 3.1260 2.8778 -1.6728 7 7 3.5533 3.6180 -0.6733 8 14 3.4381 3.4166 -3.4341 9 1 2.8610 2.4160 -4.3674 10 1 2.8000 4.7369 -3.6682 11 1 4.9006 3.5255 -3.6667 12 6 2.1550 -1.1952 0.0005 13 7 3.4394 -1.3034 0.0001 14 6 3.9675 -2.5438 0.0058 15 6 5.3259 -2.9251 0.0000 16 6 5.6755 -4.2518 0.0000 17 6 4.7008 -5.2388 0.0004 18 7 5.0925 -6.6663 0.0010 19 8 6.2708 -6.9745 0.0016 20 8 4.2364 -7.5327 0.0018 21 6 3.3684 -4.8901 0.0002 22 6 2.9955 -3.5483 0.0002 23 16 1.4069 -2.7861 0.0019 24 1 -0.3634 0.0000 1.0277 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1384 0.5138 29 1 4.0295 4.4443 -0.8506 30 1 6.0958 -2.1676 0.0001 31 1 6.7190 -4.5303 0.0000 32 1 2.6105 -5.6595 0.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756954125.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:49 Heat of formation + Delta-G solvation = 60.394042 kcal Electronic energy + Delta-G solvation = -20033.614130 eV Core-core repulsion = 16703.311912 eV Total energy + Delta-G solvation = -3330.302218 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.05117 -40.16602 -37.83071 -36.45832 -35.59627 -32.89231 -31.42889 -30.36746 -28.37868 -26.98367 -25.21212 -24.15058 -23.31629 -22.07948 -20.27702 -19.40942 -18.59449 -18.00775 -17.42570 -16.90104 -16.57726 -15.78345 -15.05564 -15.01375 -14.76463 -14.24873 -13.87936 -13.79540 -13.30018 -12.71990 -12.47840 -12.27718 -12.15697 -11.53511 -11.49658 -11.18305 -11.12102 -11.06926 -10.97423 -10.86915 -10.38278 -10.30092 -10.12589 -9.37580 -9.28503 -8.68782 -8.33557 -7.42969 -6.29261 -4.37355 -0.19382 0.86573 0.93957 1.13765 1.48459 1.68523 2.44062 3.06973 3.14495 3.23506 3.27358 3.54657 4.21141 4.30466 4.47007 4.65687 4.81736 5.03590 5.05380 5.17213 5.44745 5.45870 5.58990 5.76669 5.81433 5.95789 6.17982 6.36370 6.52669 7.00777 7.17874 7.47430 7.65360 7.76184 7.86698 8.04680 8.65385 9.29023 10.77510 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.021597 B = 0.004053 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.173486 B = 6907.560265 C = 7733.382252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.534 5.534 3 C 0.248 3.752 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.890 5.890 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.281 1.281 12 C 0.421 3.579 13 N -0.548 5.548 14 C 0.216 3.784 15 C -0.098 4.098 16 C -0.039 4.039 17 C -0.083 4.083 18 N 0.044 4.956 19 O -0.172 6.172 20 O -0.181 6.181 21 C 0.030 3.970 22 C -0.230 4.230 23 S 0.029 5.971 24 H 0.062 0.938 25 H 0.095 0.905 26 H 0.063 0.937 27 H 0.044 0.956 28 H 0.055 0.945 29 H 0.266 0.734 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.498 -11.052 2.632 11.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.243 5.243 3 C 0.128 3.872 4 C -0.574 4.574 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.528 5.528 8 Si 0.728 3.272 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.206 1.206 12 C 0.046 3.954 13 N -0.274 5.274 14 C 0.087 3.913 15 C -0.120 4.120 16 C -0.062 4.062 17 C -0.171 4.171 18 N 0.559 4.441 19 O -0.386 6.386 20 O -0.392 6.392 21 C 0.006 3.994 22 C -0.351 4.351 23 S 0.278 5.722 24 H 0.081 0.919 25 H 0.113 0.887 26 H 0.081 0.919 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.172 0.828 31 H 0.173 0.827 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.612 -9.735 2.682 11.101 hybrid contribution 1.108 -0.098 -1.013 1.504 sum -3.505 -9.832 1.669 10.571 Atomic orbital electron populations 1.21943 0.78155 1.03895 1.02041 1.47167 1.05781 1.03321 1.67994 1.19737 0.92790 0.76115 0.98526 1.21349 1.37702 1.06812 0.91563 0.92168 1.24900 0.94898 0.96087 0.97741 1.69917 1.37689 1.14284 1.30865 0.86397 0.78305 0.78468 0.84027 1.19755 1.20745 1.20634 1.24178 0.89325 0.90506 0.91436 1.66499 1.08484 1.21165 1.31271 1.19349 0.94633 0.85725 0.91585 1.20517 0.93436 0.94989 1.03062 1.20545 0.99845 0.90588 0.95246 1.20485 0.94927 0.80208 1.21460 1.43443 1.00470 1.03277 0.96931 1.94507 1.02249 1.87668 1.54139 1.94509 1.46124 1.44014 1.54583 1.19824 0.94121 0.94293 0.91152 1.23083 0.96838 0.97205 1.17934 1.84815 1.05322 1.00756 1.81352 0.91927 0.88674 0.91855 0.93791 0.92715 0.92389 0.82843 0.82725 0.83236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.11 10.41 59.85 0.62 1.74 16 2 N -0.53 -9.83 2.94 -184.18 -0.54 -10.37 16 3 C 0.25 5.65 5.27 -5.19 -0.03 5.62 16 4 C -0.54 -13.60 9.39 -34.44 -0.32 -13.92 16 5 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 6 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -24.22 13.29 55.43 0.74 -23.48 16 8 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 9 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 C 0.42 7.62 7.87 -88.91 -0.70 6.92 16 13 N -0.55 -10.76 9.79 -11.16 -0.11 -10.87 16 14 C 0.22 3.62 6.94 -84.89 -0.59 3.03 16 15 C -0.10 -1.37 10.10 -38.87 -0.39 -1.76 16 16 C -0.04 -0.50 9.51 -39.78 -0.38 -0.88 16 17 C -0.08 -1.15 6.85 -79.95 -0.55 -1.70 16 18 N 0.04 0.66 4.45 33.96 0.15 0.81 16 19 O -0.17 -2.61 18.45 -29.46 -0.54 -3.16 16 20 O -0.18 -2.78 18.44 -29.46 -0.54 -3.32 16 21 C 0.03 0.41 9.57 -39.39 -0.38 0.03 16 22 C -0.23 -3.45 6.52 -38.62 -0.25 -3.70 16 23 S 0.03 0.41 21.89 -107.50 -2.35 -1.94 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.09 1.27 8.07 -51.93 -0.42 0.85 16 26 H 0.06 0.73 7.04 -51.93 -0.37 0.37 16 27 H 0.04 1.01 8.07 -51.93 -0.42 0.59 16 28 H 0.05 1.39 7.60 -51.93 -0.39 1.00 16 29 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 31 H 0.16 1.61 7.60 -52.49 -0.40 1.21 16 32 H 0.15 1.75 7.60 -52.49 -0.40 1.35 16 LS Contribution 306.30 15.07 4.62 4.62 Total: -1.00 -28.61 306.30 -9.46 -38.07 By element: Atomic # 1 Polarization: 0.10 SS G_CDS: -2.79 Total: -2.69 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -3.06 Total: -2.96 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.24 Total: -43.91 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -1.09 Total: -6.48 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 0.41 SS G_CDS: -2.35 Total: -1.94 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.61 -9.46 -38.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756954125.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.463 kcal (2) G-P(sol) polarization free energy of solvation -28.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds