Wall clock time and date at job start Tue Mar 31 2020 06:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46494 * 119.99953 * 2 1 4 4 C 1.50706 * 109.46888 * 269.99605 * 3 2 1 5 5 H 1.07998 * 119.99922 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99734 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00421 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99781 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47144 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47122 * 120.00116 * 8 6 4 11 11 H 1.48493 * 109.47426 * 240.00192 * 8 6 4 12 12 C 1.38001 * 119.99653 * 179.97438 * 2 1 3 13 13 N 1.28899 * 124.81167 * 179.97438 * 12 2 1 14 14 C 1.34816 * 117.87595 * 179.75594 * 13 12 2 15 15 C 1.41097 * 128.73718 * 179.65287 * 14 13 12 16 16 C 1.37201 * 120.43702 * 180.36004 * 15 14 13 17 17 C 1.38712 * 120.59974 * 0.25796 * 16 15 14 18 18 N 1.48025 * 120.01542 * 180.02562 * 17 16 15 19 19 O 1.21800 * 120.00084 * 0.02562 * 18 17 16 20 20 O 1.21802 * 120.00237 * 179.97438 * 18 17 16 21 21 C 1.37727 * 119.97471 * 0.02562 * 17 16 15 22 22 C 1.39261 * 120.20005 * 359.97438 * 21 17 16 23 23 S 1.75803 * 124.82062 * 359.97438 * 12 2 1 24 24 H 1.09001 * 109.47331 * 270.00087 * 1 2 3 25 25 H 1.08998 * 109.47194 * 30.00494 * 1 2 3 26 26 H 1.09002 * 109.46893 * 150.00428 * 1 2 3 27 27 H 1.09004 * 109.47539 * 29.99577 * 3 2 1 28 28 H 1.08998 * 109.47199 * 150.00056 * 3 2 1 29 29 H 0.96996 * 120.00125 * 180.02562 * 7 6 4 30 30 H 1.08002 * 119.78405 * 0.64275 * 15 14 13 31 31 H 1.08000 * 119.70133 * 180.27401 * 16 15 14 32 32 H 1.08002 * 119.89928 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4209 5 1 2.0975 1.0960 -2.2417 6 6 3.1260 2.8778 -1.6728 7 7 3.5533 3.6180 -0.6733 8 14 3.4381 3.4166 -3.4341 9 1 2.8610 2.4160 -4.3674 10 1 2.8000 4.7369 -3.6682 11 1 4.9006 3.5255 -3.6667 12 6 2.1550 -1.1952 0.0005 13 7 3.4394 -1.3034 0.0001 14 6 3.9675 -2.5438 0.0058 15 6 5.3259 -2.9251 0.0000 16 6 5.6755 -4.2518 0.0000 17 6 4.7008 -5.2388 0.0004 18 7 5.0925 -6.6663 0.0010 19 8 6.2708 -6.9745 0.0016 20 8 4.2364 -7.5327 0.0018 21 6 3.3684 -4.8901 0.0002 22 6 2.9955 -3.5483 0.0002 23 16 1.4069 -2.7861 0.0019 24 1 -0.3634 0.0000 1.0277 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1384 0.5138 29 1 4.0295 4.4443 -0.8506 30 1 6.0958 -2.1676 0.0001 31 1 6.7190 -4.5303 0.0000 32 1 2.6105 -5.6595 0.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756954125.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:49 Heat of formation + Delta-G solvation = 45.960388 kcal Electronic energy + Delta-G solvation = -20034.240020 eV Core-core repulsion = 16703.311912 eV Total energy + Delta-G solvation = -3330.928109 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.22184 -41.37939 -39.11813 -37.64289 -36.91132 -34.79028 -32.53876 -31.56988 -30.07058 -28.20299 -26.51557 -25.61651 -24.67658 -23.28869 -21.62491 -20.57775 -19.77373 -19.24242 -18.73989 -18.59118 -17.96233 -16.93906 -16.63222 -16.39616 -16.10670 -15.53029 -15.07684 -14.99791 -14.58173 -14.13430 -13.83899 -13.56095 -13.34498 -13.24992 -12.90514 -12.69223 -12.63703 -12.30906 -12.27650 -12.26367 -12.09627 -11.82070 -11.40742 -10.81935 -10.68201 -10.58321 -9.45001 -8.81444 -8.22649 -6.40625 -1.38108 -0.28473 -0.23661 -0.06962 0.27525 0.51741 1.21924 1.35741 1.39040 1.48710 1.84827 2.34074 2.36833 3.05199 3.11155 3.34227 3.57287 3.69184 3.92247 4.10776 4.38697 4.47536 4.49873 4.68481 4.70748 4.81276 4.86990 5.05400 5.15709 5.36381 5.55822 5.77155 5.96254 5.99980 6.55940 6.66206 6.80847 7.29219 8.80010 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.021597 B = 0.004053 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.173486 B = 6907.560265 C = 7733.382252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.550 5.550 3 C 0.267 3.733 4 C -0.540 4.540 5 H 0.052 0.948 6 C 0.019 3.981 7 N -0.922 5.922 8 Si 0.960 3.040 9 H -0.271 1.271 10 H -0.272 1.272 11 H -0.282 1.282 12 C 0.392 3.608 13 N -0.593 5.593 14 C 0.188 3.812 15 C -0.100 4.100 16 C -0.026 4.026 17 C -0.083 4.083 18 N 0.044 4.956 19 O -0.174 6.174 20 O -0.187 6.187 21 C 0.037 3.963 22 C -0.242 4.242 23 S 0.106 5.894 24 H 0.086 0.914 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.036 0.964 28 H 0.019 0.981 29 H 0.268 0.732 30 H 0.162 0.838 31 H 0.180 0.820 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.088 -12.728 2.046 13.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.260 5.260 3 C 0.145 3.855 4 C -0.579 4.579 5 H 0.070 0.930 6 C -0.181 4.181 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.195 1.195 10 H -0.197 1.197 11 H -0.208 1.208 12 C 0.018 3.982 13 N -0.321 5.321 14 C 0.060 3.940 15 C -0.122 4.122 16 C -0.049 4.049 17 C -0.171 4.171 18 N 0.557 4.443 19 O -0.388 6.388 20 O -0.398 6.398 21 C 0.013 3.987 22 C -0.363 4.363 23 S 0.356 5.644 24 H 0.104 0.896 25 H 0.110 0.890 26 H 0.102 0.898 27 H 0.054 0.946 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.179 0.821 31 H 0.198 0.802 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.225 -11.467 2.097 12.774 hybrid contribution 1.332 0.237 -0.793 1.568 sum -3.893 -11.229 1.304 11.956 Atomic orbital electron populations 1.22177 0.75430 1.04746 1.03875 1.46982 1.07204 1.02280 1.69517 1.19107 0.91674 0.78153 0.96563 1.21601 1.37104 1.06556 0.92654 0.92979 1.25661 0.94868 0.96356 1.01219 1.70015 1.38683 1.14780 1.32665 0.85478 0.77884 0.78321 0.79788 1.19533 1.19747 1.20803 1.24407 0.89867 0.92032 0.91929 1.66477 1.10158 1.23451 1.31971 1.19604 0.95964 0.85384 0.93018 1.20689 0.92849 0.95803 1.02886 1.20762 1.00938 0.89608 0.93545 1.20644 0.95447 0.79852 1.21140 1.43550 1.00404 1.03529 0.96772 1.94509 1.02318 1.87830 1.54134 1.94510 1.46099 1.44330 1.54814 1.19994 0.94585 0.94049 0.90064 1.23316 0.97449 0.97512 1.17979 1.84408 1.03267 0.96565 1.80188 0.89558 0.88990 0.89803 0.94641 0.96242 0.92293 0.82051 0.80242 0.81179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.04 10.41 127.77 1.33 3.37 16 2 N -0.55 -20.37 2.94 -736.61 -2.17 -22.54 16 3 C 0.27 12.61 5.27 85.64 0.45 13.06 16 4 C -0.54 -28.03 9.39 25.60 0.24 -27.79 16 5 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 6 C 0.02 1.01 5.46 84.65 0.46 1.47 16 7 N -0.92 -51.35 13.29 21.45 0.28 -51.07 16 8 Si 0.96 41.97 29.54 68.60 2.03 43.99 16 9 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 10 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 12 C 0.39 14.16 7.87 179.75 1.41 15.57 16 13 N -0.59 -23.66 9.79 -189.23 -1.85 -25.51 16 14 C 0.19 6.20 6.94 39.76 0.28 6.47 16 15 C -0.10 -2.72 10.10 22.73 0.23 -2.49 16 16 C -0.03 -0.60 9.51 22.14 0.21 -0.39 16 17 C -0.08 -2.11 6.85 36.37 0.25 -1.86 16 18 N 0.04 1.19 4.45 -46.47 -0.21 0.99 16 19 O -0.17 -4.88 18.45 18.89 0.35 -4.53 16 20 O -0.19 -5.30 18.44 18.88 0.35 -4.96 16 21 C 0.04 0.90 9.57 22.39 0.21 1.12 16 22 C -0.24 -6.84 6.52 22.89 0.15 -6.69 16 23 S 0.11 2.80 21.89 -56.49 -1.24 1.56 16 24 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.09 2.40 8.07 -2.39 -0.02 2.38 16 26 H 0.08 1.77 7.04 -2.39 -0.02 1.75 16 27 H 0.04 1.70 8.07 -2.39 -0.02 1.68 16 28 H 0.02 1.05 7.60 -2.39 -0.02 1.03 16 29 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 30 H 0.16 4.03 8.06 -2.91 -0.02 4.01 16 31 H 0.18 3.23 7.60 -2.91 -0.02 3.21 16 32 H 0.17 3.43 7.60 -2.91 -0.02 3.41 16 Total: -1.00 -62.15 306.30 3.94 -58.22 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: 1.17 Total: 2.02 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 5.23 Total: 1.84 kcal Atomic # 7 Polarization: -94.20 SS G_CDS: -3.94 Total: -98.14 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.70 Total: -9.49 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 43.99 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -1.24 Total: 1.56 kcal Total: -62.15 3.94 -58.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756954125.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.175 kcal (2) G-P(sol) polarization free energy of solvation -62.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds