Wall clock time and date at job start Tue Mar 31 2020 06:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99808 * 2 1 4 4 H 1.48504 * 109.47051 * 269.99823 * 3 2 1 5 5 H 1.48495 * 109.47354 * 29.99934 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00353 * 3 2 1 7 7 C 1.38801 * 120.00287 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00072 * 359.97438 * 7 2 1 9 9 S 1.76200 * 120.00059 * 180.02562 * 7 2 1 10 10 C 1.81000 * 100.00094 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46980 * 179.97438 * 10 9 7 12 12 O 1.20824 * 120.00117 * 359.97438 * 11 10 9 13 13 O 1.34233 * 119.99787 * 180.02562 * 11 10 9 14 14 C 1.45199 * 117.00176 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47137 * 179.97438 * 14 13 11 16 16 C 1.35004 * 125.68895 * 359.97438 * 15 14 13 17 17 N 1.36841 * 107.09654 * 180.28408 * 16 15 14 18 18 C 1.36454 * 132.73385 * 180.48279 * 17 16 15 19 19 C 1.35580 * 119.07357 * 179.58625 * 18 17 16 20 20 C 1.40202 * 119.32860 * 359.73661 * 19 18 17 21 21 N 1.31220 * 120.38078 * 359.97438 * 20 19 18 22 22 C 1.34093 * 120.91790 * 0.02562 * 21 20 19 23 23 N 1.32514 * 131.94534 * 180.02562 * 22 21 20 24 24 H 0.96995 * 120.00059 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46970 * 59.99513 * 10 9 7 26 26 H 1.08998 * 109.46755 * 299.99508 * 10 9 7 27 27 H 1.08999 * 109.47336 * 59.99484 * 14 13 11 28 28 H 1.09008 * 109.46782 * 299.99617 * 14 13 11 29 29 H 1.08002 * 126.44797 * 0.02562 * 16 15 14 30 30 H 1.07995 * 120.46083 * 359.34844 * 18 17 16 31 31 H 1.08005 * 120.33347 * 179.71365 * 19 18 17 32 32 H 1.08001 * 119.81011 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4403 0.6999 7 6 2.0103 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0014 9 16 3.7723 -1.2019 0.0012 10 6 4.0867 -2.9844 0.0025 11 6 5.5732 -3.2323 0.0026 12 8 6.3412 -2.2996 0.0014 13 8 6.0440 -4.4894 0.0030 14 6 7.4867 -4.6530 0.0037 15 6 7.8257 -6.1213 0.0047 16 6 6.9345 -7.1354 0.0055 17 7 7.6514 -8.3010 0.0127 18 6 7.2828 -9.6148 0.0081 19 6 8.2458 -10.5692 0.0096 20 6 9.5940 -10.1845 0.0102 21 7 9.9215 -8.9138 0.0088 22 6 8.9795 -7.9595 0.0073 23 7 9.0587 -6.6367 0.0053 24 1 -0.4850 0.8400 -0.0004 25 1 3.6441 -3.4321 -0.8873 26 1 3.6435 -3.4308 0.8927 27 1 7.9053 -4.1832 0.8937 28 1 7.9060 -4.1835 -0.8863 29 1 5.8584 -7.0438 0.0050 30 1 6.2386 -9.8905 0.0073 31 1 7.9770 -11.6152 0.0107 32 1 10.3674 -10.9383 0.0117 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762851321.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:53 Heat of formation + Delta-G solvation = 28.982621 kcal Electronic energy + Delta-G solvation = -19270.795380 eV Core-core repulsion = 15939.131060 eV Total energy + Delta-G solvation = -3331.664320 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.39597 -40.23176 -38.71872 -36.36537 -34.98917 -32.51874 -31.97575 -30.50204 -29.58600 -27.45696 -25.70406 -24.38979 -23.76373 -21.55284 -20.86452 -18.68806 -18.20081 -17.79218 -17.10018 -16.90884 -16.64472 -16.32704 -15.79016 -15.03932 -14.82593 -14.49494 -14.09922 -14.07513 -13.61278 -13.46240 -12.88459 -12.81950 -12.46598 -12.31461 -12.02870 -11.35350 -11.06893 -10.83861 -10.80929 -10.78173 -10.28669 -10.20694 -9.90022 -9.39999 -9.07775 -8.64474 -8.51628 -7.05230 -6.36063 -4.10610 0.08396 0.62835 1.97327 2.20831 2.29267 2.47211 2.90237 3.17770 3.27528 3.30966 3.44545 3.51225 3.84033 3.95774 4.25170 4.27576 4.52212 4.66010 4.71064 4.93622 5.02872 5.03376 5.14058 5.17548 5.21593 5.48425 5.60593 5.69074 5.89898 5.99746 6.17988 6.48682 7.12038 7.53854 7.86609 7.95847 8.34872 9.09072 10.72874 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.048315 B = 0.002583 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.392114 B =10836.605156 C =11395.549436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.097 3.903 3 Si 0.856 3.144 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.235 1.235 7 C -0.523 4.523 8 H 0.092 0.908 9 S -0.138 6.138 10 C -0.098 4.098 11 C 0.483 3.517 12 O -0.484 6.484 13 O -0.359 6.359 14 C 0.151 3.849 15 C 0.072 3.928 16 C -0.063 4.063 17 N -0.402 5.402 18 C 0.117 3.883 19 C -0.211 4.211 20 C 0.170 3.830 21 N -0.436 5.436 22 C 0.379 3.621 23 N -0.461 5.461 24 H 0.272 0.728 25 H 0.111 0.889 26 H 0.112 0.888 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.198 0.802 30 H 0.177 0.823 31 H 0.166 0.834 32 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.930 -23.498 0.098 27.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.159 1.159 7 C -0.671 4.671 8 H 0.110 0.890 9 S 0.088 5.912 10 C -0.246 4.246 11 C 0.323 3.677 12 O -0.369 6.369 13 O -0.277 6.277 14 C 0.076 3.924 15 C -0.061 4.061 16 C -0.194 4.194 17 N -0.079 5.079 18 C -0.015 4.015 19 C -0.234 4.234 20 C -0.018 4.018 21 N -0.148 5.148 22 C 0.030 3.970 23 N -0.184 5.184 24 H 0.082 0.918 25 H 0.129 0.871 26 H 0.130 0.870 27 H 0.113 0.887 28 H 0.114 0.886 29 H 0.215 0.785 30 H 0.194 0.806 31 H 0.183 0.817 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 16.253 -21.237 0.108 26.743 hybrid contribution -2.285 -1.106 -0.028 2.539 sum 13.968 -22.343 0.080 26.349 Atomic orbital electron populations 1.69924 1.05885 1.27917 1.47556 1.24697 0.94468 0.98979 0.93057 0.86750 0.81878 0.83286 0.80025 1.19100 1.19786 1.15901 1.22250 0.87668 0.97749 1.59385 0.89045 1.84863 1.10081 0.98675 1.97560 1.23006 0.89441 1.04732 1.07430 1.23248 0.92003 0.79906 0.72498 1.90695 1.58784 1.43530 1.43878 1.86360 1.24388 1.31848 1.85080 1.20721 0.78363 0.88734 1.04617 1.20351 0.88349 0.95166 1.02197 1.22511 0.99623 0.82009 1.15252 1.44003 1.11182 1.06388 1.46337 1.22261 1.02138 0.80744 0.96401 1.21827 0.93356 1.01212 1.06998 1.23336 0.95771 0.91673 0.90983 1.67891 1.31857 1.00250 1.14782 1.21825 0.78138 0.91903 1.05123 1.70434 1.22614 1.02077 1.23315 0.91791 0.87080 0.87036 0.88652 0.88645 0.78548 0.80570 0.81672 0.79984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.82 13.97 55.49 0.78 -25.04 16 2 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 3 Si 0.86 21.16 27.74 -169.99 -4.72 16.44 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.23 -5.77 6.74 56.52 0.38 -5.39 16 7 C -0.52 -14.55 10.04 30.94 0.31 -14.24 16 8 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 9 S -0.14 -3.35 18.55 -107.50 -1.99 -5.34 16 10 C -0.10 -1.81 6.27 36.00 0.23 -1.59 16 11 C 0.48 8.36 7.98 36.00 0.29 8.65 16 12 O -0.48 -9.78 15.61 -18.75 -0.29 -10.07 16 13 O -0.36 -5.10 9.48 -39.26 -0.37 -5.47 16 14 C 0.15 2.01 6.09 36.00 0.22 2.23 16 15 C 0.07 0.95 7.04 -82.96 -0.58 0.37 16 16 C -0.06 -0.69 11.08 -16.47 -0.18 -0.87 16 17 N -0.40 -4.07 2.95 -64.40 -0.19 -4.26 16 18 C 0.12 0.66 11.07 -16.45 -0.18 0.47 16 19 C -0.21 -0.80 10.06 -39.79 -0.40 -1.20 16 20 C 0.17 1.00 11.27 -17.08 -0.19 0.81 16 21 N -0.44 -4.89 10.48 -13.70 -0.14 -5.03 16 22 C 0.38 4.96 8.92 -322.52 -2.88 2.08 16 23 N -0.46 -6.94 11.31 -10.66 -0.12 -7.06 16 24 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.11 1.89 8.14 -51.91 -0.42 1.46 16 26 H 0.11 1.89 8.14 -51.92 -0.42 1.47 16 27 H 0.10 1.26 8.13 -51.93 -0.42 0.84 16 28 H 0.10 1.26 8.13 -51.92 -0.42 0.84 16 29 H 0.20 1.67 7.83 -52.49 -0.41 1.26 16 30 H 0.18 0.34 8.06 -52.49 -0.42 -0.08 16 31 H 0.17 -0.03 8.06 -52.48 -0.42 -0.46 16 32 H 0.18 0.32 8.06 -52.49 -0.42 -0.10 16 LS Contribution 307.23 15.07 4.63 4.63 Total: -1.00 -36.04 307.23 -8.84 -44.88 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: -2.95 Total: -3.06 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -3.47 Total: -0.61 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.32 Total: -41.40 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.66 Total: -15.54 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.72 Total: 16.44 kcal Atomic # 16 Polarization: -3.35 SS G_CDS: -1.99 Total: -5.34 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -36.04 -8.84 -44.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762851321.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.859 kcal (2) G-P(sol) polarization free energy of solvation -36.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds