Wall clock time and date at job start Tue Mar 31 2020 07:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00032 * 2 1 4 4 H 1.48495 * 109.47486 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46952 * 299.99925 * 3 2 1 6 6 H 1.48503 * 109.47306 * 59.99567 * 3 2 1 7 7 C 1.37876 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00021 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00180 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47218 * 180.02562 * 9 7 2 11 11 C 1.34783 * 119.99918 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00122 * 359.97438 * 11 10 9 13 13 C 1.50692 * 120.00079 * 180.02562 * 11 10 9 14 14 N 1.46501 * 109.47528 * 179.97438 * 13 11 10 15 15 N 1.39878 * 125.44659 * 270.75541 * 14 13 11 16 16 C 1.30308 * 110.07709 * 179.97438 * 15 14 13 17 17 Cl 1.73593 * 126.12007 * 179.50441 * 16 15 14 18 18 C 1.46011 * 107.76158 * 359.46652 * 16 15 14 19 19 C 1.39916 * 134.03122 * 180.02562 * 18 16 15 20 20 C 1.36477 * 119.63728 * 179.72250 * 19 18 16 21 21 C 1.38965 * 120.62376 * 0.29638 * 20 19 18 22 22 C 1.36585 * 120.81728 * 0.02562 * 21 20 19 23 23 C 1.37035 * 125.45164 * 89.99412 * 14 13 11 24 24 H 0.97002 * 119.99940 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47181 * 59.99694 * 9 7 2 26 26 H 1.09008 * 109.47189 * 300.00481 * 9 7 2 27 27 H 0.96997 * 120.00390 * 359.97438 * 10 9 7 28 28 H 1.08995 * 109.47515 * 59.99219 * 13 11 10 29 29 H 1.09008 * 109.47052 * 299.99885 * 13 11 10 30 30 H 1.08002 * 120.18414 * 0.02562 * 19 18 16 31 31 H 1.07994 * 119.68400 * 180.27881 * 20 19 18 32 32 H 1.08002 * 119.58953 * 179.97438 * 21 20 19 33 33 H 1.07995 * 120.07512 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8834 0.0015 12 8 0.5615 -5.1050 0.0006 13 6 2.7331 -6.0288 0.0033 14 7 2.0007 -7.2975 0.0032 15 7 1.5808 -7.9919 1.1425 16 6 0.9565 -9.0823 0.7971 17 17 0.2741 -10.2569 1.8779 18 6 0.9328 -9.1389 -0.6617 19 6 0.4159 -10.0478 -1.5914 20 6 0.5585 -9.8023 -2.9264 21 6 1.2174 -8.6621 -3.3700 22 6 1.7363 -7.7635 -2.4818 23 6 1.6046 -7.9865 -1.1132 24 1 -0.4850 0.8401 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 3.1568 -3.4354 0.0021 28 1 3.3585 -5.9707 0.8941 29 1 3.3612 -5.9713 -0.8858 30 1 -0.0976 -10.9362 -1.2546 31 1 0.1559 -10.5011 -3.6446 32 1 1.3211 -8.4846 -4.4303 33 1 2.2464 -6.8815 -2.8398 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767398108.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:41 Heat of formation + Delta-G solvation = 23.142018 kcal Electronic energy + Delta-G solvation = -19993.135415 eV Core-core repulsion = 16659.174121 eV Total energy + Delta-G solvation = -3333.961294 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.46427 -40.51153 -38.29723 -37.90345 -36.24814 -34.61511 -34.29536 -31.66909 -30.99556 -29.77317 -27.81854 -24.75815 -24.17403 -23.12465 -22.36009 -21.33830 -19.25068 -18.46528 -18.17365 -17.79773 -17.07828 -16.52685 -16.33145 -16.18526 -16.06139 -15.51174 -14.98549 -14.81453 -14.65753 -14.27546 -14.06583 -13.46648 -13.35128 -12.97991 -12.92121 -12.78891 -12.72255 -12.67737 -12.23883 -12.06766 -11.73417 -11.49139 -11.26686 -10.85266 -10.77451 -9.95033 -9.78904 -8.95301 -8.31661 -6.48879 -0.16164 0.17511 0.46563 1.16770 1.42808 1.43894 1.50684 1.55005 1.57652 2.28296 2.48452 2.80054 3.03768 3.22875 3.54162 3.78188 3.86480 4.05254 4.06883 4.25407 4.38806 4.43179 4.80713 4.92110 5.05061 5.12941 5.17645 5.40811 5.44303 5.54933 5.59254 5.73133 5.80084 5.94265 6.29362 6.61464 6.76505 7.19427 7.36387 8.80748 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.023908 B = 0.003322 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.874822 B = 8426.629050 C = 9071.135626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.986 3.014 4 H -0.250 1.250 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.554 4.554 8 H 0.089 0.911 9 C 0.268 3.732 10 N -0.697 5.697 11 C 0.477 3.523 12 O -0.594 6.594 13 C 0.130 3.870 14 N -0.383 5.383 15 N -0.261 5.261 16 C 0.130 3.870 17 Cl 0.033 6.967 18 C -0.189 4.189 19 C -0.045 4.045 20 C -0.150 4.150 21 C -0.059 4.059 22 C -0.153 4.153 23 C 0.122 3.878 24 H 0.268 0.732 25 H -0.011 1.011 26 H -0.017 1.017 27 H 0.414 0.586 28 H 0.151 0.849 29 H 0.167 0.833 30 H 0.151 0.849 31 H 0.165 0.835 32 H 0.165 0.835 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.036 -20.947 -5.857 23.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.173 1.173 5 H -0.204 1.204 6 H -0.207 1.207 7 C -0.592 4.592 8 H 0.107 0.893 9 C 0.145 3.855 10 N -0.348 5.348 11 C 0.262 3.738 12 O -0.475 6.475 13 C 0.005 3.995 14 N -0.172 5.172 15 N -0.077 5.077 16 C -0.073 4.073 17 Cl 0.061 6.939 18 C -0.197 4.197 19 C -0.065 4.065 20 C -0.169 4.169 21 C -0.079 4.079 22 C -0.175 4.175 23 C 0.009 3.991 24 H 0.077 0.923 25 H 0.007 0.993 26 H 0.001 0.999 27 H 0.251 0.749 28 H 0.168 0.832 29 H 0.184 0.816 30 H 0.169 0.831 31 H 0.182 0.818 32 H 0.183 0.817 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.488 -20.225 -4.760 22.086 hybrid contribution -0.281 0.793 0.051 0.843 sum 7.207 -19.432 -4.709 21.254 Atomic orbital electron populations 1.70155 1.08412 1.28549 1.50030 1.26097 0.95743 1.04051 0.93826 0.85088 0.79222 0.77182 0.77588 1.17284 1.20448 1.20730 1.21646 0.94481 0.90251 1.52775 0.89298 1.18554 0.88669 0.84309 0.93999 1.46086 1.11567 1.04889 1.72257 1.21716 0.90087 0.85433 0.76537 1.90708 1.19438 1.85386 1.51970 1.21755 0.91584 0.76126 1.09992 1.47614 1.49781 1.19293 1.00543 1.76435 1.15249 1.05616 1.10449 1.23973 1.00309 0.92831 0.90150 1.98379 1.81501 1.51396 1.62648 1.19763 1.09535 0.99784 0.90594 1.20689 0.96025 0.97539 0.92293 1.21139 1.01525 0.99074 0.95207 1.21245 0.93468 0.92329 1.00869 1.20222 1.06409 1.02961 0.87914 1.19214 0.97229 0.92178 0.90513 0.92269 0.99341 0.99945 0.74928 0.83170 0.81599 0.83144 0.81772 0.81737 0.84293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.22 13.29 21.45 0.28 -55.93 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.99 41.65 29.54 68.60 2.03 43.67 16 4 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 5 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 6 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 7 C -0.55 -29.43 9.28 25.60 0.24 -29.19 16 8 H 0.09 4.19 7.60 -2.91 -0.02 4.17 16 9 C 0.27 14.51 5.43 85.63 0.46 14.98 16 10 N -0.70 -28.03 5.55 -466.79 -2.59 -30.62 16 11 C 0.48 18.80 7.90 87.65 0.69 19.49 16 12 O -0.59 -30.69 16.43 -3.04 -0.05 -30.74 16 13 C 0.13 3.44 6.85 85.63 0.59 4.02 16 14 N -0.38 -12.25 3.14 -343.36 -1.08 -13.33 16 15 N -0.26 -9.08 12.41 -45.94 -0.57 -9.65 16 16 C 0.13 3.99 8.09 86.93 0.70 4.69 16 17 Cl 0.03 0.80 29.33 -2.72 -0.08 0.72 16 18 C -0.19 -5.33 6.37 -20.23 -0.13 -5.46 16 19 C -0.05 -0.93 10.06 22.26 0.22 -0.71 16 20 C -0.15 -2.44 9.97 22.03 0.22 -2.22 16 21 C -0.06 -1.02 9.96 22.06 0.22 -0.80 16 22 C -0.15 -3.58 9.97 22.14 0.22 -3.36 16 23 C 0.12 3.61 6.87 39.22 0.27 3.88 16 24 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 25 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 26 H -0.02 -1.09 8.14 -2.38 -0.02 -1.11 16 27 H 0.41 12.86 8.32 -92.71 -0.77 12.09 16 28 H 0.15 3.13 8.14 -2.39 -0.02 3.12 16 29 H 0.17 2.82 8.14 -2.38 -0.02 2.80 16 30 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 31 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 32 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 33 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -80.51 316.21 2.50 -78.01 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.39 Total: 11.95 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 4.17 Total: 5.92 kcal Atomic # 7 Polarization: -105.58 SS G_CDS: -3.95 Total: -109.53 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -0.05 Total: -30.74 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.67 kcal Atomic # 17 Polarization: 0.80 SS G_CDS: -0.08 Total: 0.72 kcal Total: -80.51 2.50 -78.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767398108.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.153 kcal (2) G-P(sol) polarization free energy of solvation -80.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds