Wall clock time and date at job start Tue Mar 31 2020 06:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38226 * 119.44483 * 2 1 4 4 C 1.38515 * 119.41270 * 179.97438 * 3 2 1 5 5 C 1.39594 * 118.37273 * 0.02562 * 4 3 2 6 6 C 1.48297 * 120.56091 * 180.02562 * 5 4 3 7 7 N 1.30815 * 126.42171 * 0.02562 * 6 5 4 8 8 O 1.21291 * 110.09055 * 180.02562 * 7 6 5 9 9 C 1.33673 * 110.03450 * 359.97438 * 8 7 6 10 10 C 1.50701 * 126.43082 * 180.02562 * 9 8 7 11 11 S 1.81000 * 109.47118 * 269.97957 * 10 9 8 12 12 C 1.76196 * 99.99933 * 180.02562 * 11 10 9 13 13 H 1.08006 * 120.00319 * 359.97438 * 12 11 10 14 14 C 1.38800 * 119.99938 * 180.02562 * 12 11 10 15 15 N 1.31639 * 119.99999 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00236 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.46976 * 89.99883 * 16 14 12 18 18 H 1.48494 * 109.47168 * 210.00246 * 16 14 12 19 19 H 1.48508 * 109.46988 * 330.00142 * 16 14 12 20 20 N 1.30972 * 107.13800 * 359.73200 * 9 8 7 21 21 C 1.39980 * 118.87564 * 359.97438 * 5 4 3 22 22 O 1.35562 * 119.77017 * 180.02562 * 21 5 4 23 23 N 1.31929 * 119.44620 * 179.72130 * 2 1 3 24 24 H 1.09001 * 109.46953 * 89.99975 * 1 2 3 25 25 H 1.09000 * 109.47318 * 209.99573 * 1 2 3 26 26 H 1.09000 * 109.47161 * 330.00204 * 1 2 3 27 27 H 1.07994 * 120.29175 * 359.95543 * 3 2 1 28 28 H 1.07994 * 120.81119 * 179.97438 * 4 3 2 29 29 H 1.08997 * 109.47198 * 29.97779 * 10 9 8 30 30 H 1.09003 * 109.46938 * 149.97915 * 10 9 8 31 31 H 0.96998 * 119.99653 * 179.97438 * 15 14 12 32 32 H 0.96700 * 114.00194 * 89.99728 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1866 1.2037 0.0000 4 6 3.5717 1.2029 0.0005 5 6 4.2344 -0.0257 0.0005 6 6 5.7162 -0.0831 0.0017 7 7 6.5331 0.9386 0.0032 8 8 7.6830 0.5527 0.0033 9 6 7.7176 -0.7836 0.0023 10 6 8.9529 -1.6468 0.0026 11 16 9.4483 -1.9917 -1.7038 12 6 10.8723 -2.9880 -1.4135 13 1 11.1823 -3.2053 -0.4020 14 6 11.5963 -3.4926 -2.4848 15 7 12.6598 -4.2374 -2.2679 16 14 11.0607 -3.1162 -4.2343 17 1 11.7207 -1.8688 -4.6965 18 1 11.4487 -4.2404 -5.1235 19 1 9.5866 -2.9400 -4.2736 20 7 6.4765 -1.2018 0.0075 21 6 3.4764 -1.2025 0.0005 22 8 4.1013 -2.4056 0.0010 23 7 2.1556 -1.1488 0.0056 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6423 2.1365 -0.0007 28 1 4.1254 2.1301 0.0001 29 1 9.7602 -1.1257 0.5171 30 1 8.7405 -2.5847 0.5159 31 1 13.1656 -4.5904 -3.0166 32 1 4.2823 -2.7544 0.8845 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771110605.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:20 Heat of formation + Delta-G solvation = 63.234421 kcal Electronic energy + Delta-G solvation = -19766.783873 eV Core-core repulsion = 16436.604823 eV Total energy + Delta-G solvation = -3330.179050 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.38235 -40.77730 -37.34772 -35.86665 -34.12412 -32.57511 -32.38984 -31.86169 -28.71711 -28.12683 -25.77538 -24.33235 -23.54938 -22.87110 -21.22030 -18.75746 -18.25641 -18.00125 -17.49955 -16.68825 -16.10121 -15.78123 -15.15587 -14.69819 -14.48753 -14.38174 -14.12009 -13.57725 -13.31741 -12.93857 -12.85317 -12.68830 -12.44301 -12.16194 -11.83963 -11.70802 -11.52314 -11.16291 -11.10618 -10.90351 -10.29614 -10.02149 -9.79672 -9.73251 -9.13685 -8.87199 -8.72765 -7.15932 -6.40903 -4.17720 0.28062 0.82405 1.27055 2.31548 2.82116 2.99554 3.20555 3.23054 3.33876 3.38170 3.45052 3.55552 3.94560 4.20091 4.25562 4.41569 4.54710 4.73106 4.83331 4.98305 5.08821 5.16107 5.22231 5.27655 5.48308 5.53402 5.61860 5.74326 5.80253 5.98376 6.04143 6.20134 7.36910 7.62696 7.81955 8.23069 8.30802 9.03150 10.67874 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.029505 B = 0.003382 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.778408 B = 8277.116667 C = 8596.583682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.164 3.836 3 C -0.188 4.188 4 C -0.024 4.024 5 C -0.091 4.091 6 C 0.210 3.790 7 N -0.382 5.382 8 O 0.085 5.915 9 C 0.223 3.777 10 C -0.012 4.012 11 S -0.163 6.163 12 C -0.512 4.512 13 H 0.096 0.904 14 C 0.099 3.901 15 N -0.873 5.873 16 Si 0.855 3.145 17 H -0.266 1.266 18 H -0.271 1.271 19 H -0.237 1.237 20 N -0.454 5.454 21 C 0.364 3.636 22 O -0.455 6.455 23 N -0.504 5.504 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.145 0.855 28 H 0.147 0.853 29 H 0.110 0.890 30 H 0.120 0.880 31 H 0.273 0.727 32 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.458 10.445 7.011 24.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.026 3.974 3 C -0.208 4.208 4 C -0.051 4.051 5 C -0.096 4.096 6 C -0.060 4.060 7 N -0.090 5.090 8 O 0.024 5.976 9 C 0.002 3.998 10 C -0.161 4.161 11 S 0.062 5.938 12 C -0.660 4.660 13 H 0.114 0.886 14 C -0.111 4.111 15 N -0.509 5.509 16 Si 0.680 3.320 17 H -0.191 1.191 18 H -0.196 1.196 19 H -0.161 1.161 20 N -0.187 5.187 21 C 0.182 3.818 22 O -0.261 6.261 23 N -0.224 5.224 24 H 0.102 0.898 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.163 0.837 28 H 0.165 0.835 29 H 0.129 0.871 30 H 0.138 0.862 31 H 0.083 0.917 32 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -21.762 10.408 5.399 24.720 hybrid contribution 1.415 0.227 0.646 1.571 sum -20.348 10.635 6.045 23.742 Atomic orbital electron populations 1.20804 0.88106 1.03879 1.03606 1.21235 0.97109 0.87228 0.91874 1.21868 0.94025 0.99661 1.05208 1.21578 0.94325 0.97110 0.92125 1.18436 0.87123 0.94671 1.09376 1.23421 0.95623 0.84631 1.02346 1.74839 0.89735 1.22851 1.21574 1.85281 1.22699 1.24085 1.65517 1.28266 0.95860 0.81885 0.93740 1.21726 0.90589 0.99069 1.04722 1.84718 1.38306 1.68589 1.02140 1.22075 1.10004 1.35906 0.97987 0.88584 1.24690 0.93780 0.93371 0.99255 1.69917 1.16273 1.32065 1.32631 0.86770 0.81873 0.79162 0.84229 1.19075 1.19614 1.16133 1.72171 0.99716 1.26719 1.20128 1.19084 0.86126 0.85234 0.91361 1.84822 1.76139 1.31584 1.33602 1.67169 1.09018 1.30375 1.15819 0.89832 0.90059 0.90203 0.83677 0.83535 0.87137 0.86231 0.91660 0.73646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.16 36.01 0.37 -0.28 16 2 C 0.16 1.61 6.78 -82.55 -0.56 1.05 16 3 C -0.19 -1.63 9.71 -39.48 -0.38 -2.01 16 4 C -0.02 -0.27 9.82 -38.97 -0.38 -0.65 16 5 C -0.09 -1.27 5.91 -104.60 -0.62 -1.89 16 6 C 0.21 3.44 7.78 -156.10 -1.21 2.23 16 7 N -0.38 -6.34 11.93 30.98 0.37 -5.97 16 8 O 0.09 1.45 11.29 18.03 0.20 1.65 16 9 C 0.22 3.88 7.75 -12.98 -0.10 3.78 16 10 C -0.01 -0.22 6.30 36.01 0.23 0.00 16 11 S -0.16 -3.78 19.39 -107.50 -2.08 -5.87 16 12 C -0.51 -13.85 10.04 30.94 0.31 -13.54 16 13 H 0.10 2.70 8.03 -52.48 -0.42 2.27 16 14 C 0.10 2.75 5.50 -17.43 -0.10 2.65 16 15 N -0.87 -25.30 13.97 55.49 0.78 -24.52 16 16 Si 0.85 20.74 27.74 -169.99 -4.71 16.03 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.24 -5.73 6.74 56.52 0.38 -5.35 16 20 N -0.45 -7.95 10.11 -9.87 -0.10 -8.05 16 21 C 0.36 5.11 7.76 -16.75 -0.13 4.98 16 22 O -0.45 -6.50 11.91 -18.38 -0.22 -6.72 16 23 N -0.50 -6.49 10.28 -9.28 -0.10 -6.58 16 24 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.30 8.07 -51.93 -0.42 -0.12 16 27 H 0.15 0.76 8.06 -52.49 -0.42 0.33 16 28 H 0.15 1.43 7.94 -52.49 -0.42 1.01 16 29 H 0.11 1.77 8.14 -51.92 -0.42 1.35 16 30 H 0.12 2.04 8.14 -51.91 -0.42 1.62 16 31 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.40 4.08 9.06 45.56 0.41 4.50 16 LS Contribution 307.14 15.07 4.63 4.63 Total: -1.00 -32.36 307.14 -5.93 -38.30 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -2.11 Total: 0.80 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -2.58 Total: -3.68 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: 0.95 Total: -45.13 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.02 Total: -5.07 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.71 Total: 16.03 kcal Atomic # 16 Polarization: -3.78 SS G_CDS: -2.08 Total: -5.87 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.36 -5.93 -38.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771110605.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.530 kcal (2) G-P(sol) polarization free energy of solvation -32.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds