Wall clock time and date at job start Tue Mar 31 2020 06:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38226 * 119.44483 * 2 1 4 4 C 1.38515 * 119.41270 * 179.97438 * 3 2 1 5 5 C 1.39594 * 118.37273 * 0.02562 * 4 3 2 6 6 C 1.48297 * 120.56091 * 180.02562 * 5 4 3 7 7 N 1.30815 * 126.42171 * 0.02562 * 6 5 4 8 8 O 1.21291 * 110.09055 * 180.02562 * 7 6 5 9 9 C 1.33673 * 110.03450 * 359.97438 * 8 7 6 10 10 C 1.50701 * 126.43082 * 180.02562 * 9 8 7 11 11 S 1.81000 * 109.47118 * 269.97957 * 10 9 8 12 12 C 1.76196 * 99.99933 * 180.02562 * 11 10 9 13 13 H 1.08006 * 120.00319 * 359.97438 * 12 11 10 14 14 C 1.38800 * 119.99938 * 180.02562 * 12 11 10 15 15 N 1.31639 * 119.99999 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00236 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.46976 * 89.99883 * 16 14 12 18 18 H 1.48494 * 109.47168 * 210.00246 * 16 14 12 19 19 H 1.48508 * 109.46988 * 330.00142 * 16 14 12 20 20 N 1.30972 * 107.13800 * 359.73200 * 9 8 7 21 21 C 1.39980 * 118.87564 * 359.97438 * 5 4 3 22 22 O 1.35562 * 119.77017 * 180.02562 * 21 5 4 23 23 N 1.31929 * 119.44620 * 179.72130 * 2 1 3 24 24 H 1.09001 * 109.46953 * 89.99975 * 1 2 3 25 25 H 1.09000 * 109.47318 * 209.99573 * 1 2 3 26 26 H 1.09000 * 109.47161 * 330.00204 * 1 2 3 27 27 H 1.07994 * 120.29175 * 359.95543 * 3 2 1 28 28 H 1.07994 * 120.81119 * 179.97438 * 4 3 2 29 29 H 1.08997 * 109.47198 * 29.97779 * 10 9 8 30 30 H 1.09003 * 109.46938 * 149.97915 * 10 9 8 31 31 H 0.96998 * 119.99653 * 179.97438 * 15 14 12 32 32 H 0.96700 * 114.00194 * 89.99728 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1866 1.2037 0.0000 4 6 3.5717 1.2029 0.0005 5 6 4.2344 -0.0257 0.0005 6 6 5.7162 -0.0831 0.0017 7 7 6.5331 0.9386 0.0032 8 8 7.6830 0.5527 0.0033 9 6 7.7176 -0.7836 0.0023 10 6 8.9529 -1.6468 0.0026 11 16 9.4483 -1.9917 -1.7038 12 6 10.8723 -2.9880 -1.4135 13 1 11.1823 -3.2053 -0.4020 14 6 11.5963 -3.4926 -2.4848 15 7 12.6598 -4.2374 -2.2679 16 14 11.0607 -3.1162 -4.2343 17 1 11.7207 -1.8688 -4.6965 18 1 11.4487 -4.2404 -5.1235 19 1 9.5866 -2.9400 -4.2736 20 7 6.4765 -1.2018 0.0075 21 6 3.4764 -1.2025 0.0005 22 8 4.1013 -2.4056 0.0010 23 7 2.1556 -1.1488 0.0056 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6423 2.1365 -0.0007 28 1 4.1254 2.1301 0.0001 29 1 9.7602 -1.1257 0.5171 30 1 8.7405 -2.5847 0.5159 31 1 13.1656 -4.5904 -3.0166 32 1 4.2823 -2.7544 0.8845 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771110605.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:19 Heat of formation + Delta-G solvation = 37.545388 kcal Electronic energy + Delta-G solvation = -19767.897833 eV Core-core repulsion = 16436.604823 eV Total energy + Delta-G solvation = -3331.293010 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -46.68606 -41.65119 -38.30335 -37.12749 -35.29404 -34.69256 -33.44897 -32.64631 -30.10210 -28.94468 -27.89092 -25.47514 -24.42732 -23.95974 -22.34278 -20.04715 -19.69699 -19.33122 -18.89155 -17.64324 -17.17960 -17.14246 -16.72960 -16.28417 -15.79495 -15.48781 -14.94176 -14.90623 -14.66902 -14.29083 -13.65966 -13.54972 -13.52026 -13.45873 -13.10385 -13.04580 -13.00970 -12.74784 -12.63522 -12.21713 -11.98850 -11.49621 -11.18933 -10.89227 -10.66167 -10.62482 -9.72940 -9.09527 -8.52660 -6.27137 -0.70347 -0.10022 0.00404 0.96856 1.28980 1.30844 1.45766 1.51052 1.74394 2.20851 2.23343 2.37019 2.53254 2.61901 2.78650 2.86341 3.47348 3.64250 3.70509 3.97334 4.05221 4.24737 4.33805 4.38867 4.55388 4.66788 4.74011 4.81014 4.93594 5.02806 5.12554 5.47566 5.70339 6.13422 6.49259 6.77636 6.90977 6.91643 8.59418 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.029505 B = 0.003382 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.778408 B = 8277.116667 C = 8596.583682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.162 3.838 3 C -0.171 4.171 4 C -0.024 4.024 5 C -0.122 4.122 6 C 0.213 3.787 7 N -0.386 5.386 8 O 0.081 5.919 9 C 0.219 3.781 10 C 0.004 3.996 11 S -0.182 6.182 12 C -0.518 4.518 13 H 0.073 0.927 14 C 0.049 3.951 15 N -0.912 5.912 16 Si 0.910 3.090 17 H -0.260 1.260 18 H -0.261 1.261 19 H -0.237 1.237 20 N -0.464 5.464 21 C 0.349 3.651 22 O -0.476 6.476 23 N -0.527 5.527 24 H 0.095 0.905 25 H 0.076 0.924 26 H 0.112 0.888 27 H 0.190 0.810 28 H 0.158 0.842 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.278 0.722 32 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.107 12.332 6.826 27.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.024 3.976 3 C -0.190 4.190 4 C -0.051 4.051 5 C -0.128 4.128 6 C -0.057 4.057 7 N -0.095 5.095 8 O 0.022 5.978 9 C -0.002 4.002 10 C -0.144 4.144 11 S 0.043 5.957 12 C -0.665 4.665 13 H 0.091 0.909 14 C -0.157 4.157 15 N -0.550 5.550 16 Si 0.732 3.268 17 H -0.184 1.184 18 H -0.186 1.186 19 H -0.161 1.161 20 N -0.198 5.198 21 C 0.168 3.832 22 O -0.285 6.285 23 N -0.247 5.247 24 H 0.113 0.887 25 H 0.095 0.905 26 H 0.130 0.870 27 H 0.207 0.793 28 H 0.176 0.824 29 H 0.150 0.850 30 H 0.147 0.853 31 H 0.088 0.912 32 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -24.404 12.302 5.227 27.825 hybrid contribution 2.034 -0.287 0.842 2.220 sum -22.370 12.015 6.069 26.108 Atomic orbital electron populations 1.20960 0.85233 1.05321 1.04693 1.22023 0.98946 0.86833 0.89840 1.22318 0.93043 1.01024 1.02606 1.21837 0.95503 0.96333 0.91400 1.18594 0.85877 0.96036 1.12283 1.23857 0.96747 0.83984 1.01092 1.74817 0.89554 1.22819 1.22320 1.85268 1.23079 1.23741 1.65707 1.28025 0.95607 0.82115 0.94496 1.21620 0.91587 1.00118 1.01106 1.84506 1.36474 1.67751 1.06925 1.22233 1.11279 1.35976 0.97056 0.90906 1.25510 0.93881 0.93352 1.02985 1.70001 1.17563 1.33442 1.33990 0.85932 0.81453 0.79417 0.79964 1.18408 1.18563 1.16081 1.72179 0.99922 1.27558 1.20147 1.19196 0.86732 0.85015 0.92258 1.84765 1.76515 1.32227 1.34951 1.67235 1.08461 1.32175 1.16875 0.88679 0.90461 0.86979 0.79311 0.82421 0.85043 0.85278 0.91232 0.72374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.16 71.24 0.72 -0.17 16 2 C 0.16 2.72 6.78 42.54 0.29 3.00 16 3 C -0.17 -2.33 9.71 22.33 0.22 -2.12 16 4 C -0.02 -0.47 9.82 22.66 0.22 -0.25 16 5 C -0.12 -3.33 5.91 -19.85 -0.12 -3.44 16 6 C 0.21 6.89 7.78 137.23 1.07 7.96 16 7 N -0.39 -12.50 11.93 -59.04 -0.70 -13.21 16 8 O 0.08 2.70 11.29 74.57 0.84 3.54 16 9 C 0.22 7.48 7.75 88.36 0.68 8.16 16 10 C 0.00 0.15 6.30 71.24 0.45 0.60 16 11 S -0.18 -8.41 19.39 -56.49 -1.10 -9.50 16 12 C -0.52 -28.33 10.04 67.95 0.68 -27.65 16 13 H 0.07 4.20 8.03 -2.91 -0.02 4.17 16 14 C 0.05 2.74 5.50 84.86 0.47 3.20 16 15 N -0.91 -53.66 13.97 21.65 0.30 -53.35 16 16 Si 0.91 42.77 27.74 68.60 1.90 44.67 16 17 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 18 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 19 H -0.24 -11.02 6.74 99.48 0.67 -10.35 16 20 N -0.46 -16.15 10.11 -302.42 -3.06 -19.21 16 21 C 0.35 9.68 7.76 85.06 0.66 10.34 16 22 O -0.48 -13.82 11.91 -88.69 -1.06 -14.88 16 23 N -0.53 -12.95 10.28 -296.24 -3.05 -15.99 16 24 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.11 0.26 8.07 -2.39 -0.02 0.24 16 27 H 0.19 0.89 8.06 -2.91 -0.02 0.87 16 28 H 0.16 2.68 7.94 -2.91 -0.02 2.66 16 29 H 0.13 4.10 8.14 -2.40 -0.02 4.08 16 30 H 0.13 4.34 8.14 -2.39 -0.02 4.32 16 31 H 0.28 15.16 8.31 -92.71 -0.77 14.39 16 32 H 0.42 8.75 9.06 -74.06 -0.67 8.08 16 Total: -1.00 -70.48 307.14 -0.09 -70.57 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 0.48 Total: 7.71 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 5.35 Total: -0.35 kcal Atomic # 7 Polarization: -95.26 SS G_CDS: -6.51 Total: -101.76 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: -0.21 Total: -11.34 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.90 Total: 44.67 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.10 Total: -9.50 kcal Total: -70.48 -0.09 -70.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771110605.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.116 kcal (2) G-P(sol) polarization free energy of solvation -70.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds