Wall clock time and date at job start Tue Mar 31 2020 06:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35109 * 126.40808 * 2 1 4 4 Cl 1.73596 * 125.66537 * 359.97438 * 3 2 1 5 5 N 1.30621 * 108.66802 * 180.28264 * 3 2 1 6 6 C 1.34200 * 109.25633 * 359.73383 * 5 3 2 7 7 C 1.34601 * 108.05615 * 359.97438 * 6 5 3 8 8 S 1.76199 * 126.58442 * 180.02562 * 7 6 5 9 9 O 1.42096 * 106.40321 * 336.48124 * 8 7 6 10 10 O 1.42108 * 106.39883 * 203.56132 * 8 7 6 11 11 N 1.65597 * 107.22117 * 90.02282 * 8 7 6 12 12 C 1.46499 * 119.99926 * 64.72196 * 11 8 7 13 13 C 1.53004 * 109.47094 * 165.27799 * 12 11 8 14 14 C 1.50701 * 109.47038 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00406 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00112 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99790 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00215 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47139 * 90.00760 * 18 16 14 20 20 H 1.48502 * 109.47156 * 210.00502 * 18 16 14 21 21 H 1.48499 * 109.47192 * 330.00096 * 18 16 14 22 22 H 1.08997 * 109.47317 * 270.16548 * 1 2 3 23 23 H 1.09000 * 109.46742 * 30.17165 * 1 2 3 24 24 H 1.09001 * 109.46755 * 150.16404 * 1 2 3 25 25 H 1.08000 * 125.97122 * 180.02562 * 6 5 3 26 26 H 0.97001 * 120.00224 * 245.00409 * 11 8 7 27 27 H 1.09007 * 109.47241 * 285.27714 * 12 11 8 28 28 H 1.08995 * 109.47308 * 45.27753 * 12 11 8 29 29 H 1.08994 * 109.46776 * 299.99858 * 13 12 11 30 30 H 1.09002 * 109.46826 * 60.00127 * 13 12 11 31 31 H 0.96996 * 120.00150 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2669 1.0874 0.0000 4 17 1.7326 2.7391 -0.0006 5 7 3.5110 0.6894 -0.0061 6 6 3.5466 -0.6522 -0.0043 7 6 2.2783 -1.1031 0.0038 8 16 1.7629 -2.7880 0.0100 9 8 2.8376 -3.5384 -0.5387 10 8 0.4475 -2.8071 -0.5275 11 7 1.6278 -3.2535 1.5934 12 6 0.6233 -2.6287 2.4575 13 6 0.4517 -3.4648 3.7273 14 6 -0.5812 -2.8217 4.6165 15 1 -1.0670 -1.9082 4.3067 16 6 -0.9068 -3.4000 5.8250 17 7 -0.3156 -4.5127 6.2020 18 14 -2.1876 -2.6033 6.9268 19 1 -3.5314 -3.1387 6.5911 20 1 -1.8753 -2.9047 8.3470 21 1 -2.1742 -1.1330 6.7184 22 1 -0.3634 0.0030 1.0276 23 1 -0.3633 0.8885 -0.5165 24 1 -0.3633 -0.8915 -0.5113 25 1 4.4371 -1.2632 -0.0078 26 1 2.2166 -3.9371 1.9499 27 1 0.9492 -1.6236 2.7256 28 1 -0.3277 -2.5731 1.9278 29 1 0.1258 -4.4698 3.4592 30 1 1.4027 -3.5203 4.2570 31 1 -0.5443 -4.9194 7.0524 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784372160.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:33 Heat of formation + Delta-G solvation = -23.607226 kcal Electronic energy + Delta-G solvation = -19356.451400 eV Core-core repulsion = 16020.073764 eV Total energy + Delta-G solvation = -3336.377636 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 293.039 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.42683 -37.37577 -37.33430 -35.90836 -35.57818 -34.43151 -32.84988 -30.05694 -29.27536 -27.35695 -24.62129 -22.64652 -21.94936 -21.26835 -19.42048 -18.26096 -17.49243 -16.47133 -16.43121 -16.33274 -15.76019 -15.08978 -14.63760 -14.24631 -14.14842 -13.96732 -13.45701 -13.23746 -12.69539 -12.30806 -12.19669 -12.12670 -11.95745 -11.87529 -11.54129 -11.40680 -11.20104 -10.73269 -10.62945 -10.49570 -10.13654 -9.71038 -9.38746 -9.21989 -9.07688 -8.50055 -6.16447 -4.20745 0.32578 0.90168 1.07057 2.47577 2.50482 3.11510 3.23064 3.30225 3.32087 3.68464 4.21159 4.33630 4.47272 4.58392 4.97484 5.09199 5.20607 5.41892 5.55537 5.59159 5.99646 6.08232 6.27147 6.33087 6.55443 7.22107 7.27948 7.45011 7.53295 7.80540 8.17140 8.84459 9.44440 10.94835 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.015835 B = 0.004969 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.810132 B = 5633.934925 C = 6797.994913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.389 5.389 3 C 0.279 3.721 4 Cl 0.045 6.955 5 N -0.475 5.475 6 C 0.110 3.890 7 C -0.582 4.582 8 S 2.719 3.281 9 O -0.952 6.952 10 O -0.955 6.955 11 N -1.103 6.103 12 C 0.118 3.882 13 C 0.018 3.982 14 C -0.527 4.527 15 H 0.058 0.942 16 C 0.061 3.939 17 N -0.891 5.891 18 Si 0.896 3.104 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.274 1.274 22 H 0.099 0.901 23 H 0.097 0.903 24 H 0.129 0.871 25 H 0.197 0.803 26 H 0.421 0.579 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.028 0.972 30 H 0.025 0.975 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.390 9.465 -12.518 16.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.071 5.071 3 C -0.010 4.010 4 Cl 0.073 6.927 5 N -0.197 5.197 6 C -0.046 4.046 7 C -0.776 4.776 8 S 2.802 3.198 9 O -0.941 6.941 10 O -0.945 6.945 11 N -0.866 5.866 12 C -0.007 4.007 13 C -0.020 4.020 14 C -0.566 4.566 15 H 0.076 0.924 16 C -0.142 4.142 17 N -0.529 5.529 18 Si 0.723 3.277 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.198 1.198 22 H 0.117 0.883 23 H 0.116 0.884 24 H 0.147 0.853 25 H 0.214 0.786 26 H 0.257 0.743 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.046 0.954 30 H 0.044 0.956 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.527 9.705 -13.196 16.756 hybrid contribution -0.929 0.593 1.259 1.674 sum 2.598 10.298 -11.936 15.977 Atomic orbital electron populations 1.22948 0.74155 1.07840 1.06356 1.44930 1.08252 1.03398 1.50527 1.23787 0.86896 0.84976 1.05358 1.98438 1.88833 1.08499 1.96930 1.70357 1.16472 1.12052 1.20788 1.22400 0.95527 0.90142 0.96536 1.34141 1.00120 1.15441 1.27929 1.01388 0.73676 0.71705 0.73026 1.93606 1.56279 1.67258 1.76951 1.93523 1.37805 1.85769 1.77394 1.55501 1.48426 1.52305 1.30393 1.21704 0.88544 0.96690 0.93740 1.19288 0.97909 0.95428 0.89421 1.21031 1.22570 1.09840 1.03155 0.92379 1.24992 0.96414 0.94898 0.97852 1.69949 1.42170 1.18656 1.22103 0.86535 0.81664 0.79649 0.79805 1.20487 1.21118 1.19838 0.88274 0.88426 0.85282 0.78595 0.74333 0.93238 0.91299 0.95361 0.95621 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.74 59.85 0.64 0.94 16 2 N -0.39 -5.09 3.16 -121.40 -0.38 -5.47 16 3 C 0.28 3.75 8.51 -90.21 -0.77 2.98 16 4 Cl 0.05 0.48 28.77 -51.86 -1.49 -1.01 16 5 N -0.48 -6.97 11.26 -11.74 -0.13 -7.11 16 6 C 0.11 1.49 11.63 -17.80 -0.21 1.28 16 7 C -0.58 -8.01 6.99 -16.51 -0.12 -8.12 16 8 S 2.72 38.78 5.83 -107.50 -0.63 38.15 16 9 O -0.95 -14.90 17.86 -57.17 -1.02 -15.92 16 10 O -0.96 -15.10 14.88 -57.17 -0.85 -15.95 16 11 N -1.10 -16.62 6.00 -10.61 -0.06 -16.69 16 12 C 0.12 2.12 6.16 -4.04 -0.02 2.09 16 13 C 0.02 0.43 5.12 -27.88 -0.14 0.28 16 14 C -0.53 -13.68 9.11 -34.44 -0.31 -13.99 16 15 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -25.23 13.29 55.43 0.74 -24.49 16 18 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 22 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.10 0.76 7.81 -51.93 -0.41 0.35 16 24 H 0.13 1.44 5.64 -51.93 -0.29 1.14 16 25 H 0.20 2.09 8.06 -52.49 -0.42 1.67 16 26 H 0.42 5.82 8.65 -34.47 -0.30 5.52 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.20 7.76 -51.93 -0.40 0.80 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 LS Contribution 302.16 15.07 4.55 4.55 Total: -1.00 -32.11 302.16 -8.38 -40.49 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -3.05 Total: 1.00 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -1.03 Total: -13.00 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.16 Total: -53.75 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -1.87 Total: -31.86 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 38.78 SS G_CDS: -0.63 Total: 38.15 kcal Atomic # 17 Polarization: 0.48 SS G_CDS: -1.49 Total: -1.01 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.11 -8.38 -40.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784372160.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.883 kcal (2) G-P(sol) polarization free energy of solvation -32.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds