Wall clock time and date at job start Tue Mar 31 2020 06:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35109 * 126.40808 * 2 1 4 4 Cl 1.73596 * 125.66537 * 359.97438 * 3 2 1 5 5 N 1.30621 * 108.66802 * 180.28264 * 3 2 1 6 6 C 1.34200 * 109.25633 * 359.73383 * 5 3 2 7 7 C 1.34601 * 108.05615 * 359.97438 * 6 5 3 8 8 S 1.76199 * 126.58442 * 180.02562 * 7 6 5 9 9 O 1.42096 * 106.40321 * 336.48124 * 8 7 6 10 10 O 1.42108 * 106.39883 * 203.56132 * 8 7 6 11 11 N 1.65597 * 107.22117 * 90.02282 * 8 7 6 12 12 C 1.46499 * 119.99926 * 64.72196 * 11 8 7 13 13 C 1.53004 * 109.47094 * 165.27799 * 12 11 8 14 14 C 1.50701 * 109.47038 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00406 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00112 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99790 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00215 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47139 * 90.00760 * 18 16 14 20 20 H 1.48502 * 109.47156 * 210.00502 * 18 16 14 21 21 H 1.48499 * 109.47192 * 330.00096 * 18 16 14 22 22 H 1.08997 * 109.47317 * 270.16548 * 1 2 3 23 23 H 1.09000 * 109.46742 * 30.17165 * 1 2 3 24 24 H 1.09001 * 109.46755 * 150.16404 * 1 2 3 25 25 H 1.08000 * 125.97122 * 180.02562 * 6 5 3 26 26 H 0.97001 * 120.00224 * 245.00409 * 11 8 7 27 27 H 1.09007 * 109.47241 * 285.27714 * 12 11 8 28 28 H 1.08995 * 109.47308 * 45.27753 * 12 11 8 29 29 H 1.08994 * 109.46776 * 299.99858 * 13 12 11 30 30 H 1.09002 * 109.46826 * 60.00127 * 13 12 11 31 31 H 0.96996 * 120.00150 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2669 1.0874 0.0000 4 17 1.7326 2.7391 -0.0006 5 7 3.5110 0.6894 -0.0061 6 6 3.5466 -0.6522 -0.0043 7 6 2.2783 -1.1031 0.0038 8 16 1.7629 -2.7880 0.0100 9 8 2.8376 -3.5384 -0.5387 10 8 0.4475 -2.8071 -0.5275 11 7 1.6278 -3.2535 1.5934 12 6 0.6233 -2.6287 2.4575 13 6 0.4517 -3.4648 3.7273 14 6 -0.5812 -2.8217 4.6165 15 1 -1.0670 -1.9082 4.3067 16 6 -0.9068 -3.4000 5.8250 17 7 -0.3156 -4.5127 6.2020 18 14 -2.1876 -2.6033 6.9268 19 1 -3.5314 -3.1387 6.5911 20 1 -1.8753 -2.9047 8.3470 21 1 -2.1742 -1.1330 6.7184 22 1 -0.3634 0.0030 1.0276 23 1 -0.3633 0.8885 -0.5165 24 1 -0.3633 -0.8915 -0.5113 25 1 4.4371 -1.2632 -0.0078 26 1 2.2166 -3.9371 1.9499 27 1 0.9492 -1.6236 2.7256 28 1 -0.3277 -2.5731 1.9278 29 1 0.1258 -4.4698 3.4592 30 1 1.4027 -3.5203 4.2570 31 1 -0.5443 -4.9194 7.0524 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784372160.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:32 Heat of formation + Delta-G solvation = -46.983938 kcal Electronic energy + Delta-G solvation = -19357.465090 eV Core-core repulsion = 16020.073764 eV Total energy + Delta-G solvation = -3337.391327 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 293.039 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.43165 -38.56050 -38.27099 -37.14175 -37.06368 -35.40593 -34.73739 -31.10175 -31.01763 -28.24444 -26.43689 -23.72908 -22.99682 -22.90427 -20.59472 -19.35825 -18.74138 -18.23307 -17.54122 -17.39323 -17.02659 -16.47184 -16.13196 -15.56997 -15.50446 -15.13722 -14.43537 -14.33455 -14.11591 -13.48278 -13.40366 -13.34326 -13.24565 -13.16320 -12.98799 -12.83383 -12.58547 -12.46936 -12.32998 -11.58784 -11.51598 -11.31520 -11.12067 -10.64716 -10.40634 -10.15541 -8.19732 -6.30051 -0.84397 -0.05090 0.03780 1.43902 1.44746 1.45333 1.55203 1.57580 1.94229 2.43359 2.53940 3.12884 3.16063 3.52921 3.66086 4.09767 4.14586 4.22061 4.49666 4.55264 4.68082 4.80888 4.94262 5.10289 5.37858 5.50583 5.64241 5.81508 5.99000 6.21623 6.26238 6.85933 7.39453 8.92201 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.015835 B = 0.004969 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.810132 B = 5633.934925 C = 6797.994913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.390 5.390 3 C 0.274 3.726 4 Cl 0.069 6.931 5 N -0.499 5.499 6 C 0.107 3.893 7 C -0.593 4.593 8 S 2.746 3.254 9 O -0.963 6.963 10 O -0.969 6.969 11 N -1.104 6.104 12 C 0.133 3.867 13 C 0.019 3.981 14 C -0.541 4.541 15 H 0.070 0.930 16 C 0.004 3.996 17 N -0.930 5.930 18 Si 0.961 3.039 19 H -0.274 1.274 20 H -0.287 1.287 21 H -0.261 1.261 22 H 0.106 0.894 23 H 0.124 0.876 24 H 0.123 0.877 25 H 0.218 0.782 26 H 0.426 0.574 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.005 0.995 30 H 0.007 0.993 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.762 11.025 -12.926 17.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.073 5.073 3 C -0.016 4.016 4 Cl 0.096 6.904 5 N -0.221 5.221 6 C -0.050 4.050 7 C -0.789 4.789 8 S 2.830 3.170 9 O -0.952 6.952 10 O -0.959 6.959 11 N -0.866 5.866 12 C 0.008 3.992 13 C -0.020 4.020 14 C -0.580 4.580 15 H 0.088 0.912 16 C -0.194 4.194 17 N -0.570 5.570 18 Si 0.786 3.214 19 H -0.199 1.199 20 H -0.213 1.213 21 H -0.185 1.185 22 H 0.125 0.875 23 H 0.143 0.857 24 H 0.141 0.859 25 H 0.235 0.765 26 H 0.262 0.738 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.024 0.976 30 H 0.025 0.975 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.882 11.256 -13.614 17.898 hybrid contribution -0.708 0.160 1.329 1.515 sum 2.175 11.416 -12.285 16.911 Atomic orbital electron populations 1.23199 0.72856 1.08966 1.07212 1.45099 1.09064 1.03054 1.50043 1.24086 0.86852 0.86074 1.04568 1.98446 1.88545 1.06611 1.96766 1.70362 1.17376 1.12574 1.21796 1.22869 0.96300 0.90166 0.95625 1.33898 1.00518 1.15206 1.29255 1.00455 0.72925 0.71506 0.72078 1.93590 1.56677 1.68071 1.76905 1.93505 1.38661 1.86204 1.77520 1.55377 1.48111 1.52712 1.30436 1.21348 0.89781 0.96168 0.91918 1.19164 0.96313 0.95070 0.91457 1.21550 1.22774 1.10142 1.03537 0.91222 1.25886 0.98525 0.95427 0.99601 1.70078 1.43976 1.20272 1.22659 0.85500 0.79049 0.79277 0.77550 1.19933 1.21289 1.18493 0.87518 0.85725 0.85875 0.76548 0.73775 0.92081 0.90519 0.97642 0.97453 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.74 127.77 1.37 1.71 16 2 N -0.39 -9.49 3.16 -538.01 -1.70 -11.19 16 3 C 0.27 6.85 8.51 180.21 1.53 8.39 16 4 Cl 0.07 1.30 28.77 -2.72 -0.08 1.23 16 5 N -0.50 -13.89 11.26 -191.05 -2.15 -16.04 16 6 C 0.11 2.73 11.63 83.50 0.97 3.70 16 7 C -0.59 -15.41 6.99 83.04 0.58 -14.83 16 8 S 2.75 75.08 5.83 -56.49 -0.33 74.75 16 9 O -0.96 -29.04 17.86 -128.00 -2.29 -31.32 16 10 O -0.97 -29.41 14.88 -128.00 -1.90 -31.31 16 11 N -1.10 -32.39 6.00 -187.48 -1.12 -33.52 16 12 C 0.13 4.65 6.16 86.38 0.53 5.18 16 13 C 0.02 0.88 5.12 29.85 0.15 1.03 16 14 C -0.54 -27.85 9.11 25.60 0.23 -27.62 16 15 H 0.07 3.33 7.74 -2.91 -0.02 3.31 16 16 C 0.00 0.22 5.46 84.65 0.46 0.68 16 17 N -0.93 -53.37 13.29 21.45 0.28 -53.08 16 18 Si 0.96 41.47 29.54 68.60 2.03 43.49 16 19 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 22 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.12 1.61 7.81 -2.39 -0.02 1.59 16 24 H 0.12 2.53 5.64 -2.39 -0.01 2.51 16 25 H 0.22 4.28 8.06 -2.91 -0.02 4.26 16 26 H 0.43 11.65 8.65 -96.74 -0.84 10.81 16 27 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 28 H 0.08 2.56 7.76 -2.39 -0.02 2.54 16 29 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -67.04 302.16 -1.09 -68.13 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 0.34 Total: 10.62 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: 5.84 Total: -21.76 kcal Atomic # 7 Polarization: -109.14 SS G_CDS: -4.69 Total: -113.83 kcal Atomic # 8 Polarization: -58.44 SS G_CDS: -4.19 Total: -62.63 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.49 kcal Atomic # 16 Polarization: 75.08 SS G_CDS: -0.33 Total: 74.75 kcal Atomic # 17 Polarization: 1.30 SS G_CDS: -0.08 Total: 1.23 kcal Total: -67.04 -1.09 -68.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784372160.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.143 kcal (2) G-P(sol) polarization free energy of solvation -67.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds