Wall clock time and date at job start Tue Mar 31 2020 06:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46578 * 2 1 4 4 H 1.08997 * 109.47597 * 305.00099 * 3 2 1 5 5 C 1.50704 * 109.47269 * 184.99982 * 3 2 1 6 6 H 1.07990 * 119.99757 * 240.00271 * 5 3 2 7 7 C 1.37877 * 119.99796 * 60.00009 * 5 3 2 8 8 N 1.31509 * 120.00000 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99763 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47146 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.46834 * 119.99975 * 9 7 5 12 12 H 1.48504 * 109.47022 * 239.99877 * 9 7 5 13 13 O 1.45199 * 109.47158 * 65.00107 * 3 2 1 14 14 C 1.34715 * 117.00094 * 269.99955 * 13 3 2 15 15 O 1.21458 * 119.99636 * 359.97438 * 14 13 3 16 16 C 1.47801 * 119.99985 * 179.72658 * 14 13 3 17 17 C 1.39718 * 119.99236 * 359.71725 * 16 14 13 18 18 C 1.37664 * 120.03343 * 179.76442 * 17 16 14 19 19 C 1.39707 * 120.01978 * 0.51751 * 18 17 16 20 20 C 1.43206 * 120.01308 * 179.71927 * 19 18 17 21 21 N 9.61709 * 70.69591 * 49.84302 * 2 1 3 22 22 C 1.39777 * 119.97661 * 359.73875 * 19 18 17 23 23 Cl 1.73609 * 120.01547 * 179.97438 * 22 19 18 24 24 C 1.37906 * 119.96582 * 0.02562 * 22 19 18 25 25 H 1.09003 * 109.46186 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47046 * 299.99354 * 1 2 3 27 27 H 1.08996 * 109.47256 * 60.00501 * 1 2 3 28 28 H 1.08997 * 109.47046 * 240.00645 * 2 1 3 29 29 H 1.08996 * 109.47256 * 119.99498 * 2 1 3 30 30 H 0.96999 * 119.99995 * 179.97438 * 8 7 5 31 31 H 1.08005 * 119.97894 * 0.02755 * 17 16 14 32 32 H 1.08007 * 119.98658 * 180.23775 * 18 17 16 33 33 H 1.08004 * 120.00393 * 180.02562 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4445 -0.1238 6 1 4.1470 1.8891 0.6523 7 6 4.1432 0.8787 -1.2280 8 7 3.4062 0.3377 -2.1733 9 14 6.0050 0.8805 -1.3811 10 1 6.5986 1.5458 -0.1937 11 1 6.4962 -0.5185 -1.4626 12 1 6.3999 1.6162 -2.6092 13 8 1.6557 2.0917 1.2407 14 6 0.4683 2.7276 1.2561 15 8 -0.2269 2.7399 0.2602 16 6 0.0089 3.4057 2.4864 17 6 0.8038 3.3820 3.6352 18 6 0.3790 4.0174 4.7802 19 6 -0.8523 4.6773 4.7976 20 6 -1.2967 5.3331 5.9905 21 7 -1.6492 5.8532 6.9369 22 6 -1.6504 4.6969 3.6503 23 17 -3.1809 5.5161 3.6709 24 6 -1.2219 4.0643 2.5022 25 1 -0.3632 -1.0278 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.8293 -0.0600 -2.9502 31 1 1.7539 2.8685 3.6236 32 1 0.9958 4.0018 5.6667 33 1 -1.8379 4.0794 1.6152 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787084301.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:18 Heat of formation + Delta-G solvation = -59.490804 kcal Electronic energy + Delta-G solvation = -20136.081875 eV Core-core repulsion = 16766.244602 eV Total energy + Delta-G solvation = -3369.837273 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.65235 -40.33246 -37.85512 -37.72890 -37.40143 -35.48039 -33.43104 -32.80071 -32.14905 -29.32284 -26.73389 -25.06839 -23.99404 -22.76112 -21.48506 -20.32192 -19.31432 -18.56215 -17.72183 -17.14893 -16.83122 -16.43941 -16.12923 -15.53976 -15.38268 -14.99903 -14.77678 -14.68891 -14.18782 -14.06116 -13.84637 -13.56954 -13.33984 -13.24502 -13.08640 -12.80951 -12.65458 -12.63253 -12.51688 -12.22241 -12.09073 -11.71647 -11.49298 -11.32036 -10.78175 -10.49744 -10.34698 -10.04987 -8.23193 -6.39090 -0.98494 -0.06311 0.72903 1.15301 1.42656 1.46503 1.47236 1.60038 1.90156 1.97764 2.43039 2.53797 2.58811 3.07604 3.53430 3.67359 3.87689 3.94314 4.13447 4.43175 4.45044 4.54026 4.61121 4.71107 4.87033 4.89868 5.09275 5.15535 5.25567 5.34807 5.41247 5.56581 5.72129 5.99343 6.13721 6.22832 6.64685 6.93692 7.31805 8.83570 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.026576 B = 0.003583 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.344517 B = 7813.479450 C = 8423.154455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.131 4.131 3 C 0.227 3.773 4 H 0.010 0.990 5 C -0.545 4.545 6 H 0.071 0.929 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.977 3.023 10 H -0.261 1.261 11 H -0.275 1.275 12 H -0.280 1.280 13 O -0.348 6.348 14 C 0.490 3.510 15 O -0.531 6.531 16 C -0.085 4.085 17 C -0.049 4.049 18 C -0.045 4.045 19 C 0.011 3.989 20 C 0.271 3.729 21 N -0.424 5.424 22 C -0.007 4.007 23 Cl -0.045 7.045 24 C -0.051 4.051 25 H 0.059 0.941 26 H 0.039 0.961 27 H 0.035 0.965 28 H 0.085 0.915 29 H 0.050 0.950 30 H 0.269 0.731 31 H 0.169 0.831 32 H 0.190 0.810 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.371 5.693 12.673 15.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.169 4.169 3 C 0.174 3.826 4 H 0.028 0.972 5 C -0.582 4.582 6 H 0.090 0.910 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.801 3.199 10 H -0.185 1.185 11 H -0.200 1.200 12 H -0.206 1.206 13 O -0.264 6.264 14 C 0.335 3.665 15 O -0.423 6.423 16 C -0.087 4.087 17 C -0.068 4.068 18 C -0.065 4.065 19 C 0.006 3.994 20 C -0.045 4.045 21 N -0.099 5.099 22 C -0.037 4.037 23 Cl -0.016 7.016 24 C -0.070 4.070 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.103 0.897 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.187 0.813 32 H 0.207 0.793 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -7.219 6.458 13.657 16.744 hybrid contribution 0.512 -0.247 -1.290 1.409 sum -6.708 6.211 12.368 15.380 Atomic orbital electron populations 1.21731 0.96347 1.00626 1.00193 1.21885 0.94395 0.98080 1.02542 1.20434 0.94580 0.89252 0.78382 0.97221 1.21366 0.90416 1.39627 1.06839 0.91044 1.25749 1.03871 0.94055 0.94532 1.70015 1.37263 1.38111 1.09886 0.85208 0.78168 0.78127 0.78362 1.18461 1.20033 1.20621 1.86490 1.34660 1.62670 1.42627 1.21530 0.80250 0.76471 0.88242 1.90797 1.55897 1.59075 1.36543 1.19334 0.96112 1.00683 0.92570 1.21771 0.99970 0.95130 0.89880 1.21494 0.92564 0.92676 0.99762 1.16025 0.96115 1.00664 0.86548 1.25314 0.93298 0.93274 0.92583 1.81274 1.07977 1.09125 1.11523 1.20623 0.89484 0.99562 0.93988 1.98420 1.27699 1.76906 1.98567 1.20986 0.94613 0.93699 0.97708 0.92182 0.94193 0.94541 0.89687 0.93149 0.92168 0.81345 0.79290 0.82852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.38 8.56 71.98 0.62 -4.76 16 2 C -0.13 -6.14 5.49 30.60 0.17 -5.98 16 3 C 0.23 11.39 2.25 29.85 0.07 11.46 16 4 H 0.01 0.57 7.16 -2.39 -0.02 0.55 16 5 C -0.54 -28.76 8.90 25.60 0.23 -28.54 16 6 H 0.07 3.65 7.81 -2.92 -0.02 3.63 16 7 C 0.02 0.93 5.29 84.66 0.45 1.37 16 8 N -0.91 -50.18 11.29 21.45 0.24 -49.94 16 9 Si 0.98 40.78 29.54 68.60 2.03 42.80 16 10 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 11 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 12 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 13 O -0.35 -14.69 9.04 -56.24 -0.51 -15.20 16 14 C 0.49 18.14 6.35 70.35 0.45 18.59 16 15 O -0.53 -22.72 13.52 19.97 0.27 -22.45 16 16 C -0.08 -2.18 5.88 -20.06 -0.12 -2.30 16 17 C -0.05 -0.92 9.60 22.49 0.22 -0.70 16 18 C -0.04 -0.59 9.73 22.49 0.22 -0.37 16 19 C 0.01 0.18 5.74 -21.30 -0.12 0.05 16 20 C 0.27 5.12 14.36 88.33 1.27 6.39 16 21 N -0.42 -9.75 18.54 19.00 0.35 -9.39 16 22 C -0.01 -0.14 6.34 22.56 0.14 0.00 16 23 Cl -0.05 -0.88 28.01 -2.72 -0.08 -0.95 16 24 C -0.05 -1.16 9.36 22.52 0.21 -0.95 16 25 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.04 1.53 6.06 -2.39 -0.01 1.52 16 27 H 0.04 1.59 7.79 -2.39 -0.02 1.57 16 28 H 0.08 4.44 5.95 -2.39 -0.01 4.42 16 29 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 31 H 0.17 2.96 7.60 -2.91 -0.02 2.94 16 32 H 0.19 1.11 8.06 -2.91 -0.02 1.09 16 33 H 0.15 3.62 7.64 -2.91 -0.02 3.59 16 Total: -1.00 -62.35 311.75 7.25 -55.09 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: 1.16 Total: 5.75 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: 3.79 Total: -5.72 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: 0.59 Total: -59.34 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -0.24 Total: -37.65 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.80 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.95 kcal Total: -62.35 7.25 -55.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787084301.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.396 kcal (2) G-P(sol) polarization free energy of solvation -62.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds