Wall clock time and date at job start Tue Mar 31 2020 06:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46997 * 2 1 4 4 H 1.09001 * 109.47502 * 55.00061 * 3 2 1 5 5 C 1.50706 * 109.47238 * 174.99896 * 3 2 1 6 6 H 1.07995 * 120.00167 * 119.72028 * 5 3 2 7 7 C 1.37879 * 119.99394 * 299.99727 * 5 3 2 8 8 N 1.31514 * 119.99350 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 120.00608 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47353 * 89.99430 * 9 7 5 11 11 H 1.48494 * 109.47031 * 209.99977 * 9 7 5 12 12 H 1.48504 * 109.46680 * 329.99678 * 9 7 5 13 13 O 1.45200 * 109.46978 * 294.99673 * 3 2 1 14 14 C 1.34702 * 117.00095 * 90.00481 * 13 3 2 15 15 O 1.21461 * 119.99834 * 359.97438 * 14 13 3 16 16 C 1.47807 * 120.00183 * 180.02562 * 14 13 3 17 17 C 1.39716 * 119.99078 * 359.72227 * 16 14 13 18 18 C 1.37659 * 120.03859 * 179.72451 * 17 16 14 19 19 C 1.39718 * 120.01435 * 0.54478 * 18 17 16 20 20 C 1.43198 * 120.01107 * 179.70019 * 19 18 17 21 21 N 9.62181 * 70.80029 * 310.32470 * 2 1 3 22 22 C 1.39775 * 119.97819 * 359.72959 * 19 18 17 23 23 Cl 1.73602 * 120.01745 * 179.97438 * 22 19 18 24 24 C 1.37908 * 119.96705 * 359.97438 * 22 19 18 25 25 H 1.08996 * 109.46972 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47331 * 300.00296 * 1 2 3 27 27 H 1.09001 * 109.46791 * 60.00740 * 1 2 3 28 28 H 1.08993 * 109.47331 * 239.99704 * 2 1 3 29 29 H 1.09002 * 109.46801 * 119.99817 * 2 1 3 30 30 H 0.97005 * 119.99656 * 180.02562 * 8 7 5 31 31 H 1.08011 * 119.97647 * 359.97438 * 17 16 14 32 32 H 1.08001 * 119.99761 * 180.25290 * 18 17 16 33 33 H 1.08000 * 120.00926 * 180.02562 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1474 1.8849 -0.6544 7 6 4.1432 0.8785 1.2281 8 7 5.4539 0.8797 1.3359 9 14 3.0963 0.1089 2.5702 10 1 2.8754 -1.3272 2.2635 11 1 3.7935 0.2350 3.8752 12 1 1.7876 0.8074 2.6387 13 8 1.6559 2.0916 -1.2407 14 6 0.4686 2.7276 -1.2561 15 8 -0.2270 2.7393 -0.2605 16 6 0.0118 3.4104 -2.4849 17 6 0.8142 3.4009 -3.6286 18 6 0.3872 4.0316 -4.7753 19 6 -0.8442 4.6916 -4.7927 20 6 -1.2854 5.3531 -5.9836 21 7 -1.6342 5.8801 -6.9275 22 6 -1.6449 4.7064 -3.6472 23 17 -3.1748 5.5267 -3.6675 24 6 -1.2191 4.0691 -2.5007 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.8770 0.4812 2.1126 31 1 1.7684 2.8949 -3.6142 32 1 1.0062 4.0204 -5.6602 33 1 -1.8374 4.0797 -1.6153 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787084302.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:21 Heat of formation + Delta-G solvation = -36.242607 kcal Electronic energy + Delta-G solvation = -20218.309356 eV Core-core repulsion = 16849.480200 eV Total energy + Delta-G solvation = -3368.829155 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.52191 -39.30318 -36.93704 -36.81171 -36.13695 -33.76754 -32.17566 -31.83577 -31.32845 -27.98635 -25.67019 -23.27625 -22.88662 -21.70527 -20.11788 -19.49525 -18.12073 -16.86967 -16.53888 -16.05580 -15.66211 -15.33527 -14.85639 -14.63668 -14.39393 -14.06868 -13.60900 -13.22253 -13.15175 -13.03036 -12.66704 -12.58224 -12.10551 -11.97958 -11.83322 -11.74501 -11.59647 -11.39738 -11.32769 -10.83900 -10.28048 -10.09651 -9.74884 -9.64282 -9.50746 -9.23886 -9.19498 -8.74258 -6.31250 -4.34678 -0.10169 0.72316 1.54153 2.14616 2.26893 2.97832 3.08703 3.12363 3.25764 3.26757 3.39495 3.48914 4.18647 4.27675 4.67720 4.74821 4.75635 4.97966 5.05887 5.32223 5.53302 5.68297 5.72229 5.81420 5.87508 5.94179 6.13129 6.31183 6.48122 6.55460 6.62287 6.91029 7.06097 7.20291 7.38060 8.04087 8.39512 8.74579 9.24949 10.80471 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.029710 B = 0.003708 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.206055 B = 7549.346621 C = 8084.884318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.149 4.149 3 C 0.199 3.801 4 H 0.049 0.951 5 C -0.528 4.528 6 H 0.088 0.912 7 C 0.082 3.918 8 N -0.885 5.885 9 Si 0.876 3.124 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.260 1.260 13 O -0.331 6.331 14 C 0.494 3.506 15 O -0.502 6.502 16 C -0.070 4.070 17 C -0.057 4.057 18 C -0.070 4.070 19 C 0.003 3.997 20 C 0.251 3.749 21 N -0.395 5.395 22 C -0.009 4.009 23 Cl -0.046 7.046 24 C -0.053 4.053 25 H 0.043 0.957 26 H 0.056 0.944 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.270 0.730 31 H 0.163 0.837 32 H 0.152 0.848 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.361 4.494 -9.376 16.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.187 4.187 3 C 0.145 3.855 4 H 0.067 0.933 5 C -0.566 4.566 6 H 0.106 0.894 7 C -0.122 4.122 8 N -0.522 5.522 9 Si 0.704 3.296 10 H -0.199 1.199 11 H -0.216 1.216 12 H -0.184 1.184 13 O -0.246 6.246 14 C 0.337 3.663 15 O -0.392 6.392 16 C -0.072 4.072 17 C -0.075 4.075 18 C -0.090 4.090 19 C -0.001 4.001 20 C -0.065 4.065 21 N -0.070 5.070 22 C -0.039 4.039 23 Cl -0.017 7.017 24 C -0.071 4.071 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.181 0.819 32 H 0.170 0.830 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -13.032 5.310 -10.405 17.501 hybrid contribution -0.460 -0.682 1.288 1.528 sum -13.492 4.627 -9.117 16.929 Atomic orbital electron populations 1.21910 0.96927 1.00219 1.01758 1.22384 0.94398 0.99457 1.02442 1.21072 0.96500 0.88107 0.79792 0.93295 1.20756 0.87486 1.40393 1.07941 0.89352 1.24723 0.94945 0.95193 0.97357 1.69828 1.08500 1.44016 1.29828 0.87016 0.81018 0.80177 0.81352 1.19865 1.21620 1.18440 1.86540 1.33152 1.62056 1.42890 1.20812 0.81264 0.77158 0.87028 1.90813 1.55400 1.58138 1.34835 1.19533 0.94807 0.99296 0.93587 1.21707 1.00192 0.95280 0.90343 1.21217 0.93256 0.95063 0.99505 1.15982 0.95835 1.00826 0.87436 1.25348 0.94129 0.94016 0.92989 1.81242 1.07101 1.08156 1.10506 1.20692 0.89333 0.99669 0.94189 1.98415 1.27756 1.76954 1.98579 1.21104 0.95159 0.93555 0.97328 0.93794 0.92457 0.93611 0.91055 0.91637 0.91949 0.81934 0.83024 0.82299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.56 37.16 0.32 -2.39 16 2 C -0.15 -3.10 5.15 -26.73 -0.14 -3.24 16 3 C 0.20 4.54 1.84 -27.88 -0.05 4.49 16 4 H 0.05 1.19 6.22 -51.93 -0.32 0.87 16 5 C -0.53 -14.06 9.48 -34.44 -0.33 -14.39 16 6 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 7 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 8 N -0.89 -25.44 13.96 55.43 0.77 -24.66 16 9 Si 0.88 20.47 24.41 -169.99 -4.15 16.32 16 10 H -0.27 -6.11 6.83 56.52 0.39 -5.72 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.26 -5.93 6.53 56.52 0.37 -5.56 16 13 O -0.33 -6.54 9.04 -40.50 -0.37 -6.91 16 14 C 0.49 8.44 6.35 34.64 0.22 8.66 16 15 O -0.50 -9.56 13.51 -19.24 -0.26 -9.82 16 16 C -0.07 -0.88 5.88 -104.92 -0.62 -1.49 16 17 C -0.06 -0.57 9.60 -39.24 -0.38 -0.95 16 18 C -0.07 -0.56 9.73 -39.24 -0.38 -0.94 16 19 C 0.00 0.03 5.74 -106.84 -0.61 -0.58 16 20 C 0.25 2.64 14.36 -22.47 -0.32 2.31 16 21 N -0.40 -4.88 18.54 41.84 0.78 -4.10 16 22 C -0.01 -0.09 6.34 -39.13 -0.25 -0.34 16 23 Cl -0.05 -0.46 28.00 -51.86 -1.45 -1.91 16 24 C -0.05 -0.58 9.36 -39.19 -0.37 -0.94 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 1.07 7.79 -51.93 -0.40 0.67 16 27 H 0.04 0.78 6.06 -51.93 -0.31 0.47 16 28 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.07 1.43 3.21 -51.93 -0.17 1.26 16 30 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.16 1.58 7.60 -52.48 -0.40 1.18 16 32 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.16 1.71 7.64 -52.49 -0.40 1.31 16 LS Contribution 304.98 15.07 4.60 4.60 Total: -1.00 -29.43 304.98 -5.96 -35.40 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -2.88 Total: -1.23 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -3.00 Total: -7.68 kcal Atomic # 7 Polarization: -30.32 SS G_CDS: 1.55 Total: -28.77 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.63 Total: -16.73 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.15 Total: 16.32 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.45 Total: -1.91 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.43 -5.96 -35.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787084302.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.843 kcal (2) G-P(sol) polarization free energy of solvation -29.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds