Wall clock time and date at job start Tue Mar 31 2020 07:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86796 * 119.99770 * 2 1 4 4 H 1.48502 * 109.47379 * 269.99884 * 3 2 1 5 5 H 1.48500 * 109.47311 * 29.99978 * 3 2 1 6 6 H 1.48504 * 109.47053 * 149.99842 * 3 2 1 7 7 C 1.38798 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00418 * 359.97438 * 7 2 1 9 9 S 1.76199 * 119.99622 * 180.02562 * 7 2 1 10 10 C 1.80996 * 100.00049 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47271 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00159 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00151 * 179.97438 * 11 10 9 14 14 N 1.40102 * 120.00381 * 179.97438 * 13 11 10 15 15 C 1.39310 * 120.00415 * 180.02562 * 14 13 11 16 16 N 1.32975 * 125.26824 * 359.97438 * 15 14 13 17 17 C 1.32959 * 109.61861 * 180.02562 * 16 15 14 18 18 C 1.40606 * 132.74794 * 180.02562 * 17 16 15 19 19 C 1.36248 * 119.27400 * 180.02562 * 18 17 16 20 20 C 1.40215 * 119.59872 * 0.02562 * 19 18 17 21 21 C 1.35252 * 120.19175 * 359.97438 * 20 19 18 22 22 N 1.35836 * 120.59115 * 359.97438 * 21 20 19 23 23 N 1.31791 * 125.27623 * 180.02562 * 15 14 13 24 24 H 0.96998 * 120.00133 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47131 * 59.99591 * 10 9 7 26 26 H 1.09000 * 109.46895 * 300.00148 * 10 9 7 27 27 H 0.96998 * 120.00022 * 359.97438 * 13 11 10 28 28 H 0.96998 * 119.99597 * 359.97438 * 14 13 11 29 29 H 1.08001 * 120.36129 * 0.02562 * 18 17 16 30 30 H 1.08000 * 120.20262 * 180.27196 * 19 18 17 31 31 H 1.08001 * 119.90301 * 179.97438 * 20 19 18 32 32 H 1.08003 * 119.70196 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0014 9 16 3.7723 -1.2020 0.0012 10 6 4.0866 -2.9844 0.0025 11 6 5.5730 -3.2324 0.0026 12 8 6.3440 -2.2962 0.0014 13 7 6.0457 -4.4946 0.0041 14 7 7.4276 -4.7252 0.0036 15 6 7.9162 -6.0298 0.0046 16 7 7.1688 -7.1296 0.0064 17 6 7.9537 -8.2028 0.0074 18 6 7.6837 -9.5827 0.0089 19 6 8.7221 -10.4647 0.0102 20 6 10.0392 -9.9839 0.0106 21 6 10.2772 -8.6525 0.0091 22 7 9.2478 -7.7662 0.0068 23 7 9.1907 -6.3652 0.0048 24 1 -0.4850 0.8400 0.0004 25 1 3.6440 -3.4321 -0.8873 26 1 3.6433 -3.4309 0.8926 27 1 5.4291 -5.2434 0.0054 28 1 8.0442 -3.9764 0.0019 29 1 6.6643 -9.9394 0.0090 30 1 8.5319 -11.5278 0.0069 31 1 10.8660 -10.6787 0.0120 32 1 11.2949 -8.2908 0.0090 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791255413.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:41 Heat of formation + Delta-G solvation = 134.787449 kcal Electronic energy + Delta-G solvation = -19228.531774 eV Core-core repulsion = 15933.748247 eV Total energy + Delta-G solvation = -3294.783527 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.89992 -39.59404 -38.32572 -35.77596 -33.82697 -32.46208 -32.24657 -30.34981 -30.12200 -28.19375 -25.63262 -24.09998 -23.73107 -21.95255 -21.17769 -18.50114 -18.38578 -17.48140 -17.37693 -16.80474 -16.59100 -16.01672 -15.39660 -15.28802 -15.00812 -14.85592 -14.07735 -13.54964 -13.50709 -13.17839 -13.00508 -12.81451 -12.38799 -11.68707 -11.57659 -11.40803 -11.29707 -11.02280 -10.70313 -10.36868 -9.93719 -9.88289 -9.78214 -9.02169 -8.70597 -8.55201 -7.86392 -6.95640 -6.30542 -4.03368 0.29533 0.61470 1.24411 2.15746 2.45078 2.82007 2.87159 3.07881 3.31812 3.35493 3.48988 3.52565 3.86209 4.22883 4.28422 4.31255 4.49887 4.63784 4.86615 4.90773 5.08397 5.11753 5.35623 5.60879 5.66441 5.67345 5.79699 5.94305 5.96636 6.37021 6.63406 7.01713 7.49727 7.85040 7.92434 8.40609 8.42563 9.15080 10.78556 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.051566 B = 0.002550 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.866578 B =10977.283183 C =11505.005734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.523 4.523 8 H 0.091 0.909 9 S -0.132 6.132 10 C -0.113 4.113 11 C 0.533 3.467 12 O -0.519 6.519 13 N -0.513 5.513 14 N -0.488 5.488 15 C 0.515 3.485 16 N -0.579 5.579 17 C 0.309 3.691 18 C -0.116 4.116 19 C -0.054 4.054 20 C -0.173 4.173 21 C 0.127 3.873 22 N -0.281 5.281 23 N -0.380 5.380 24 H 0.271 0.729 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.431 0.569 28 H 0.450 0.550 29 H 0.157 0.843 30 H 0.150 0.850 31 H 0.160 0.840 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.504 -23.900 0.108 30.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.671 4.671 8 H 0.109 0.891 9 S 0.094 5.906 10 C -0.265 4.265 11 C 0.319 3.681 12 O -0.392 6.392 13 N -0.264 5.264 14 N -0.227 5.227 15 C 0.148 3.852 16 N -0.316 5.316 17 C 0.056 3.944 18 C -0.138 4.138 19 C -0.080 4.080 20 C -0.196 4.196 21 C -0.003 4.003 22 N -0.055 5.055 23 N -0.224 5.224 24 H 0.081 0.919 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.272 0.728 28 H 0.296 0.704 29 H 0.175 0.825 30 H 0.168 0.832 31 H 0.177 0.823 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 20.542 -21.469 0.108 29.714 hybrid contribution -0.751 -0.603 -0.034 0.963 sum 19.791 -22.072 0.074 29.646 Atomic orbital electron populations 1.69935 1.05888 1.27816 1.47843 1.24701 0.94458 0.98958 0.93153 0.86745 0.81885 0.83317 0.79960 1.19170 1.19881 1.15915 1.22307 0.88065 0.97676 1.59019 0.89149 1.84839 1.09499 0.98836 1.97472 1.23187 0.91473 1.05180 1.06676 1.20629 0.91178 0.80415 0.75905 1.90729 1.58295 1.41619 1.48569 1.44935 0.93889 1.09512 1.78085 1.41685 0.96604 1.01494 1.82885 1.19976 0.87064 0.86147 0.92049 1.70554 1.31212 0.95051 1.34831 1.21535 0.80909 0.95375 0.96581 1.20313 1.01986 0.86659 1.04884 1.21248 0.91576 1.00867 0.94270 1.20912 0.98718 0.93289 1.06711 1.21558 0.92816 0.88027 0.97907 1.47384 1.07063 1.05498 1.45509 1.78846 1.14729 0.84628 1.44156 0.91883 0.87718 0.87671 0.72761 0.70424 0.82538 0.83247 0.82283 0.81210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.34 13.97 55.49 0.78 -25.56 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.62 27.74 -169.99 -4.72 16.90 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 7 C -0.52 -14.87 10.04 30.94 0.31 -14.56 16 8 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 9 S -0.13 -3.30 18.55 -107.50 -1.99 -5.29 16 10 C -0.11 -2.14 6.16 36.00 0.22 -1.92 16 11 C 0.53 9.57 7.96 -10.99 -0.09 9.48 16 12 O -0.52 -11.03 15.70 5.56 0.09 -10.94 16 13 N -0.51 -7.64 6.32 31.22 0.20 -7.44 16 14 N -0.49 -7.22 6.46 29.91 0.19 -7.03 16 15 C 0.52 7.53 9.03 -321.76 -2.90 4.62 16 16 N -0.58 -8.04 10.75 -13.19 -0.14 -8.18 16 17 C 0.31 3.48 7.87 -156.29 -1.23 2.25 16 18 C -0.12 -0.80 10.11 -39.41 -0.40 -1.20 16 19 C -0.05 -0.20 10.07 -39.56 -0.40 -0.60 16 20 C -0.17 -0.60 9.99 -39.90 -0.40 -1.00 16 21 C 0.13 0.80 11.20 -16.84 -0.19 0.61 16 22 N -0.28 -3.07 3.89 -12.35 -0.05 -3.12 16 23 N -0.38 -5.26 12.81 29.91 0.38 -4.88 16 24 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.10 1.81 8.14 -51.92 -0.42 1.39 16 26 H 0.11 1.82 8.14 -51.92 -0.42 1.40 16 27 H 0.43 5.61 8.29 -182.60 -1.51 4.10 16 28 H 0.45 6.58 8.13 -182.60 -1.48 5.10 16 29 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 30 H 0.15 0.08 8.06 -52.49 -0.42 -0.34 16 31 H 0.16 0.01 8.06 -52.49 -0.42 -0.42 16 32 H 0.17 0.63 8.06 -52.48 -0.42 0.21 16 LS Contribution 306.33 15.07 4.62 4.62 Total: -1.00 -36.40 306.33 -10.93 -47.32 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -5.11 Total: 3.22 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -5.17 Total: 0.38 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: 1.36 Total: -56.21 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.94 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.72 Total: 16.90 kcal Atomic # 16 Polarization: -3.30 SS G_CDS: -1.99 Total: -5.29 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -36.40 -10.93 -47.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791255413.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.110 kcal (2) G-P(sol) polarization free energy of solvation -36.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds