Wall clock time and date at job start Tue Mar 31 2020 07:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86796 * 119.99770 * 2 1 4 4 H 1.48502 * 109.47379 * 269.99884 * 3 2 1 5 5 H 1.48500 * 109.47311 * 29.99978 * 3 2 1 6 6 H 1.48504 * 109.47053 * 149.99842 * 3 2 1 7 7 C 1.38798 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00418 * 359.97438 * 7 2 1 9 9 S 1.76199 * 119.99622 * 180.02562 * 7 2 1 10 10 C 1.80996 * 100.00049 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47271 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00159 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00151 * 179.97438 * 11 10 9 14 14 N 1.40102 * 120.00381 * 179.97438 * 13 11 10 15 15 C 1.39310 * 120.00415 * 180.02562 * 14 13 11 16 16 N 1.32975 * 125.26824 * 359.97438 * 15 14 13 17 17 C 1.32959 * 109.61861 * 180.02562 * 16 15 14 18 18 C 1.40606 * 132.74794 * 180.02562 * 17 16 15 19 19 C 1.36248 * 119.27400 * 180.02562 * 18 17 16 20 20 C 1.40215 * 119.59872 * 0.02562 * 19 18 17 21 21 C 1.35252 * 120.19175 * 359.97438 * 20 19 18 22 22 N 1.35836 * 120.59115 * 359.97438 * 21 20 19 23 23 N 1.31791 * 125.27623 * 180.02562 * 15 14 13 24 24 H 0.96998 * 120.00133 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47131 * 59.99591 * 10 9 7 26 26 H 1.09000 * 109.46895 * 300.00148 * 10 9 7 27 27 H 0.96998 * 120.00022 * 359.97438 * 13 11 10 28 28 H 0.96998 * 119.99597 * 359.97438 * 14 13 11 29 29 H 1.08001 * 120.36129 * 0.02562 * 18 17 16 30 30 H 1.08000 * 120.20262 * 180.27196 * 19 18 17 31 31 H 1.08001 * 119.90301 * 179.97438 * 20 19 18 32 32 H 1.08003 * 119.70196 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0014 9 16 3.7723 -1.2020 0.0012 10 6 4.0866 -2.9844 0.0025 11 6 5.5730 -3.2324 0.0026 12 8 6.3440 -2.2962 0.0014 13 7 6.0457 -4.4946 0.0041 14 7 7.4276 -4.7252 0.0036 15 6 7.9162 -6.0298 0.0046 16 7 7.1688 -7.1296 0.0064 17 6 7.9537 -8.2028 0.0074 18 6 7.6837 -9.5827 0.0089 19 6 8.7221 -10.4647 0.0102 20 6 10.0392 -9.9839 0.0106 21 6 10.2772 -8.6525 0.0091 22 7 9.2478 -7.7662 0.0068 23 7 9.1907 -6.3652 0.0048 24 1 -0.4850 0.8400 0.0004 25 1 3.6440 -3.4321 -0.8873 26 1 3.6433 -3.4309 0.8926 27 1 5.4291 -5.2434 0.0054 28 1 8.0442 -3.9764 0.0019 29 1 6.6643 -9.9394 0.0090 30 1 8.5319 -11.5278 0.0069 31 1 10.8660 -10.6787 0.0120 32 1 11.2949 -8.2908 0.0090 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791255413.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:40 Heat of formation + Delta-G solvation = 110.487442 kcal Electronic energy + Delta-G solvation = -19229.585502 eV Core-core repulsion = 15933.748247 eV Total energy + Delta-G solvation = -3295.837254 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.65827 -40.95748 -39.05272 -36.92775 -34.66861 -34.50153 -33.38527 -31.43170 -30.76200 -29.44352 -27.83916 -24.69022 -24.41527 -22.85554 -22.49792 -20.07545 -19.39094 -18.85830 -18.26834 -17.72321 -17.43729 -17.12005 -16.84161 -16.69714 -16.16170 -15.90223 -15.49409 -15.13136 -14.83951 -14.53690 -13.80813 -13.73851 -13.36167 -13.34616 -13.02081 -12.73775 -12.41341 -12.25918 -12.22506 -11.88337 -11.41905 -11.20854 -11.16718 -10.74942 -10.56115 -9.41700 -9.03248 -8.89039 -8.50893 -6.22315 -0.17949 -0.02021 0.16726 1.01038 1.28403 1.32316 1.37958 1.49666 1.66439 1.73144 2.24882 2.45455 2.47721 2.66125 2.87327 3.09443 3.44649 3.74105 3.90988 4.14710 4.17427 4.38006 4.43419 4.47360 4.67011 5.01841 5.14994 5.26163 5.42271 5.55201 5.71460 5.71879 5.96319 6.13495 6.34046 6.80861 6.93917 7.18235 8.61352 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.051566 B = 0.002550 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.866578 B =10977.283183 C =11505.005734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.046 3.954 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.236 1.236 7 C -0.529 4.529 8 H 0.066 0.934 9 S -0.162 6.162 10 C -0.100 4.100 11 C 0.540 3.460 12 O -0.556 6.556 13 N -0.493 5.493 14 N -0.496 5.496 15 C 0.500 3.500 16 N -0.613 5.613 17 C 0.284 3.716 18 C -0.135 4.135 19 C -0.028 4.028 20 C -0.142 4.142 21 C 0.095 3.905 22 N -0.287 5.287 23 N -0.408 5.408 24 H 0.277 0.723 25 H 0.124 0.876 26 H 0.125 0.875 27 H 0.440 0.560 28 H 0.447 0.553 29 H 0.170 0.830 30 H 0.196 0.804 31 H 0.207 0.793 32 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.642 -27.102 0.128 34.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.160 4.160 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.160 1.160 7 C -0.677 4.677 8 H 0.085 0.915 9 S 0.064 5.936 10 C -0.252 4.252 11 C 0.325 3.675 12 O -0.432 6.432 13 N -0.242 5.242 14 N -0.235 5.235 15 C 0.132 3.868 16 N -0.352 5.352 17 C 0.034 3.966 18 C -0.157 4.157 19 C -0.053 4.053 20 C -0.164 4.164 21 C -0.033 4.033 22 N -0.060 5.060 23 N -0.252 5.252 24 H 0.086 0.914 25 H 0.142 0.858 26 H 0.143 0.857 27 H 0.284 0.716 28 H 0.293 0.707 29 H 0.187 0.813 30 H 0.213 0.787 31 H 0.224 0.776 32 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 22.703 -24.774 0.129 33.603 hybrid contribution -1.231 -0.079 -0.044 1.234 sum 21.472 -24.852 0.085 32.844 Atomic orbital electron populations 1.70013 1.07267 1.29026 1.49043 1.25543 0.95273 1.02231 0.92938 0.85886 0.80713 0.79689 0.80206 1.18712 1.18386 1.15977 1.22458 0.90061 0.96882 1.58296 0.91536 1.84737 1.06616 1.04635 1.97629 1.23110 0.92699 1.00714 1.08641 1.20242 0.90410 0.80854 0.75948 1.90716 1.58869 1.42860 1.50782 1.44524 0.94721 1.08783 1.76195 1.41631 0.95847 1.01991 1.84059 1.20030 0.87594 0.86028 0.93135 1.70458 1.32420 0.95547 1.36800 1.22119 0.80873 0.96401 0.97239 1.20715 1.03914 0.85073 1.06044 1.21880 0.90689 1.02554 0.90211 1.21615 1.00126 0.92497 1.02161 1.22370 0.93042 0.88742 0.99161 1.47470 1.08143 1.04672 1.45732 1.78651 1.14665 0.87027 1.44885 0.91351 0.85777 0.85736 0.71610 0.70715 0.81299 0.78714 0.77570 0.79197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.65 13.97 21.65 0.30 -55.35 16 2 C 0.05 2.68 5.50 84.86 0.47 3.14 16 3 Si 0.91 44.89 27.74 68.60 1.90 46.79 16 4 H -0.26 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.24 -11.55 6.74 99.48 0.67 -10.88 16 7 C -0.53 -30.55 10.04 67.95 0.68 -29.87 16 8 H 0.07 4.03 8.03 -2.91 -0.02 4.00 16 9 S -0.16 -8.12 18.55 -56.49 -1.05 -9.17 16 10 C -0.10 -3.73 6.16 71.23 0.44 -3.29 16 11 C 0.54 19.44 7.96 87.66 0.70 20.13 16 12 O -0.56 -23.96 15.70 -3.03 -0.05 -24.01 16 13 N -0.49 -14.79 6.32 -173.54 -1.10 -15.89 16 14 N -0.50 -15.17 6.46 -59.27 -0.38 -15.55 16 15 C 0.50 15.10 9.03 261.12 2.36 17.46 16 16 N -0.61 -17.36 10.75 -195.65 -2.10 -19.46 16 17 C 0.28 6.22 7.87 134.07 1.06 7.28 16 18 C -0.14 -1.53 10.11 22.38 0.23 -1.30 16 19 C -0.03 -0.07 10.07 22.29 0.22 0.15 16 20 C -0.14 -0.27 9.99 22.06 0.22 -0.05 16 21 C 0.10 0.95 11.20 83.38 0.93 1.88 16 22 N -0.29 -6.07 3.89 -192.98 -0.75 -6.82 16 23 N -0.41 -11.61 12.81 -59.30 -0.76 -12.37 16 24 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 25 H 0.12 4.20 8.14 -2.40 -0.02 4.18 16 26 H 0.12 4.21 8.14 -2.40 -0.02 4.19 16 27 H 0.44 11.47 8.29 -213.32 -1.77 9.70 16 28 H 0.45 13.76 8.13 -213.32 -1.73 12.03 16 29 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 30 H 0.20 -1.17 8.06 -2.91 -0.02 -1.19 16 31 H 0.21 -1.47 8.06 -2.91 -0.02 -1.50 16 32 H 0.19 0.93 8.06 -2.91 -0.02 0.91 16 Total: -1.00 -82.84 306.33 0.98 -81.87 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -2.34 Total: 14.42 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 7.30 Total: 15.53 kcal Atomic # 7 Polarization: -120.65 SS G_CDS: -4.79 Total: -125.44 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.05 Total: -24.01 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.90 Total: 46.79 kcal Atomic # 16 Polarization: -8.12 SS G_CDS: -1.05 Total: -9.17 kcal Total: -82.84 0.98 -81.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791255413.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.357 kcal (2) G-P(sol) polarization free energy of solvation -82.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds