Wall clock time and date at job start Tue Mar 31 2020 07:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 N 1.35495 * 179.97438 * 2 1 4 4 C 1.46498 * 120.00322 * 290.21411 * 3 2 1 5 5 C 1.50703 * 109.46937 * 270.00086 * 4 3 2 6 6 O 1.21281 * 119.99887 * 0.02562 * 5 4 3 7 7 N 1.34772 * 119.99690 * 179.97438 * 5 4 3 8 8 C 1.46505 * 119.99707 * 179.97438 * 7 5 4 9 9 C 1.50709 * 109.47075 * 180.02562 * 8 7 5 10 10 H 1.08006 * 119.99780 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99913 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99968 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 119.99877 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47339 * 89.99825 * 13 11 9 15 15 H 1.48498 * 109.47133 * 210.00402 * 13 11 9 16 16 H 1.48504 * 109.47246 * 329.99879 * 13 11 9 17 17 C 1.39851 * 120.00083 * 110.21086 * 3 2 1 18 18 C 1.38918 * 120.07024 * 180.02562 * 17 3 2 19 19 C 1.38091 * 119.95808 * 179.97438 * 18 17 3 20 20 C 1.38288 * 120.08299 * 359.97438 * 19 18 17 21 21 C 1.38382 * 120.12996 * 0.04124 * 20 19 18 22 22 Cl 1.73606 * 119.97619 * 179.97438 * 21 20 19 23 23 C 1.38245 * 120.05217 * 359.96025 * 21 20 19 24 24 H 1.08999 * 109.47227 * 29.99844 * 4 3 2 25 25 H 1.09002 * 109.47360 * 149.99965 * 4 3 2 26 26 H 0.97000 * 120.00291 * 0.02562 * 7 5 4 27 27 H 1.08996 * 109.47439 * 300.00109 * 8 7 5 28 28 H 1.09002 * 109.46955 * 60.00408 * 8 7 5 29 29 H 0.97000 * 119.99570 * 179.97438 * 12 11 9 30 30 H 1.08006 * 120.01719 * 359.95877 * 18 17 3 31 31 H 1.07997 * 119.95744 * 179.97438 * 19 18 17 32 32 H 1.08000 * 119.93321 * 180.02562 * 20 19 18 33 33 H 1.07995 * 120.04656 * 180.29877 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 7 2.4909 0.0006 0.0000 4 6 3.2237 -0.4374 1.1905 5 6 3.4743 0.7457 2.0897 6 8 3.0793 1.8463 1.7679 7 7 4.1365 0.5805 3.2518 8 6 4.3807 1.7308 4.1257 9 6 5.1344 1.2802 5.3505 10 1 5.4048 0.2410 5.4661 11 6 5.4786 2.1946 6.3233 12 7 5.1488 3.4599 6.1826 13 14 6.4134 1.6362 7.8410 14 1 7.8732 1.7311 7.5861 15 1 6.0542 2.5045 8.9909 16 1 6.0558 0.2290 8.1528 17 6 3.1900 0.4193 -1.1366 18 6 4.5792 0.4200 -1.1383 19 6 5.2671 0.8335 -2.2620 20 6 4.5749 1.2463 -3.3858 21 6 3.1911 1.2473 -3.3878 22 17 2.3261 1.7670 -4.8005 23 6 2.4969 0.8346 -2.2658 24 1 2.6350 -1.1823 1.7259 25 1 4.1763 -0.8742 0.8907 26 1 4.4521 -0.2998 3.5093 27 1 4.9700 2.4752 3.5903 28 1 3.4282 2.1681 4.4252 29 1 5.3906 4.1031 6.8673 30 1 5.1208 0.0977 -0.2612 31 1 6.3471 0.8344 -2.2633 32 1 5.1154 1.5687 -4.2634 33 1 1.4169 0.8308 -2.2691 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794572918.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:38 Heat of formation + Delta-G solvation = 7.484795 kcal Electronic energy + Delta-G solvation = -19808.210356 eV Core-core repulsion = 16473.570114 eV Total energy + Delta-G solvation = -3334.640242 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.54199 -40.16464 -38.48891 -37.42946 -36.28603 -35.94962 -34.36369 -32.18547 -31.23815 -29.95715 -28.15599 -24.78724 -24.36837 -23.24177 -21.62923 -20.40358 -19.26243 -18.58510 -17.73395 -17.20615 -16.74700 -16.53604 -16.15478 -16.04730 -15.78395 -15.48801 -14.85010 -14.68919 -14.50750 -14.42117 -14.11418 -13.97043 -13.64889 -13.10329 -12.91564 -12.83640 -12.80304 -12.68935 -12.37926 -12.20989 -11.96101 -11.55028 -11.46338 -10.78453 -10.75269 -9.89011 -9.84341 -8.97693 -8.26890 -6.43099 0.11166 0.20767 0.83321 1.14366 1.41130 1.46397 1.47927 1.58923 1.66885 1.86050 2.32898 2.51433 2.74706 3.08918 3.49483 3.78541 3.87012 3.99819 4.11225 4.16015 4.29086 4.36505 4.56604 4.76838 5.13847 5.16189 5.26668 5.29209 5.37422 5.40937 5.48944 5.69406 5.86571 5.89418 6.68433 6.72671 6.87332 7.26186 7.47402 8.84984 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.025357 B = 0.003140 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.978526 B = 8915.042403 C = 9405.382360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.429 3.571 3 N -0.483 5.483 4 C 0.109 3.891 5 C 0.471 3.529 6 O -0.593 6.593 7 N -0.698 5.698 8 C 0.267 3.733 9 C -0.551 4.551 10 H 0.090 0.910 11 C 0.002 3.998 12 N -0.933 5.933 13 Si 0.982 3.018 14 H -0.270 1.270 15 H -0.290 1.290 16 H -0.254 1.254 17 C 0.191 3.809 18 C -0.156 4.156 19 C -0.057 4.057 20 C -0.142 4.142 21 C -0.006 4.006 22 Cl -0.069 7.069 23 C -0.181 4.181 24 H 0.152 0.848 25 H 0.177 0.823 26 H 0.415 0.585 27 H -0.009 1.009 28 H -0.018 1.018 29 H 0.267 0.733 30 H 0.157 0.843 31 H 0.175 0.825 32 H 0.158 0.842 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.569 -12.264 -17.746 21.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.142 5.142 2 C 0.026 3.974 3 N -0.193 5.193 4 C -0.015 4.015 5 C 0.256 3.744 6 O -0.474 6.474 7 N -0.349 5.349 8 C 0.144 3.856 9 C -0.589 4.589 10 H 0.108 0.892 11 C -0.197 4.197 12 N -0.572 5.572 13 Si 0.805 3.195 14 H -0.195 1.195 15 H -0.216 1.216 16 H -0.177 1.177 17 C 0.095 3.905 18 C -0.177 4.177 19 C -0.075 4.075 20 C -0.161 4.161 21 C -0.033 4.033 22 Cl -0.040 7.040 23 C -0.203 4.203 24 H 0.169 0.831 25 H 0.194 0.806 26 H 0.251 0.749 27 H 0.009 0.991 28 H 0.000 1.000 29 H 0.076 0.924 30 H 0.174 0.826 31 H 0.192 0.808 32 H 0.176 0.824 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.563 -11.327 -17.895 21.236 hybrid contribution 0.314 0.418 0.991 1.121 sum 1.877 -10.909 -16.904 20.206 Atomic orbital electron populations 1.81896 1.06493 1.18548 1.07308 1.23478 0.86530 0.92045 0.95387 1.41416 0.96140 1.67882 1.13865 1.22061 1.02373 0.93849 0.83262 1.21913 0.78171 0.91475 0.82826 1.90727 1.52933 1.29056 1.74651 1.46092 1.55808 1.13206 1.19770 1.18523 0.93913 0.84654 0.88496 1.21644 1.36939 0.96360 1.03989 0.89237 1.26049 0.96754 0.94621 1.02279 1.70144 1.47201 1.03540 1.36295 0.85195 0.78470 0.78756 0.77049 1.19498 1.21609 1.17715 1.17723 0.91990 0.96335 0.84447 1.21169 0.90134 1.04762 1.01641 1.21348 1.01932 0.93945 0.90291 1.21323 0.90916 1.02707 1.01186 1.20705 0.93173 1.01210 0.88227 1.98372 1.77346 1.89098 1.39220 1.20536 0.99880 1.06905 0.92993 0.83059 0.80590 0.74862 0.99109 1.00048 0.92418 0.82587 0.80769 0.82432 0.86524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -14.90 18.54 17.21 0.32 -14.58 16 2 C 0.43 12.73 14.12 184.39 2.60 15.33 16 3 N -0.48 -11.89 2.20 -394.03 -0.87 -12.76 16 4 C 0.11 2.10 5.60 85.63 0.48 2.58 16 5 C 0.47 15.78 7.90 87.66 0.69 16.47 16 6 O -0.59 -27.14 16.43 -3.03 -0.05 -27.19 16 7 N -0.70 -24.86 5.55 -466.77 -2.59 -27.45 16 8 C 0.27 13.60 5.43 85.63 0.46 14.06 16 9 C -0.55 -27.92 9.28 25.60 0.24 -27.68 16 10 H 0.09 3.97 7.60 -2.91 -0.02 3.95 16 11 C 0.00 0.13 5.46 84.65 0.46 0.59 16 12 N -0.93 -54.83 13.29 21.45 0.28 -54.54 16 13 Si 0.98 40.43 29.54 68.60 2.03 42.46 16 14 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 15 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 16 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 17 C 0.19 4.46 6.52 38.17 0.25 4.71 16 18 C -0.16 -2.79 9.21 22.40 0.21 -2.58 16 19 C -0.06 -0.82 10.04 22.25 0.22 -0.59 16 20 C -0.14 -2.31 9.83 22.32 0.22 -2.09 16 21 C -0.01 -0.13 6.32 22.31 0.14 0.01 16 22 Cl -0.07 -1.43 28.95 -2.72 -0.08 -1.50 16 23 C -0.18 -4.46 9.08 22.42 0.20 -4.26 16 24 H 0.15 1.98 8.03 -2.39 -0.02 1.96 16 25 H 0.18 1.64 6.20 -2.39 -0.01 1.63 16 26 H 0.41 10.98 8.32 -92.71 -0.77 10.21 16 27 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 28 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 29 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 30 H 0.16 2.10 6.14 -2.91 -0.02 2.09 16 31 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 32 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 33 H 0.12 3.17 7.01 -2.91 -0.02 3.15 16 Total: -1.00 -76.52 318.60 5.63 -70.90 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 0.40 Total: 8.11 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: 6.18 Total: 16.56 kcal Atomic # 7 Polarization: -106.47 SS G_CDS: -2.85 Total: -109.33 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.05 Total: -27.19 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.08 Total: -1.50 kcal Total: -76.52 5.63 -70.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794572918.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.383 kcal (2) G-P(sol) polarization free energy of solvation -76.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds