Wall clock time and date at job start Tue Mar 31 2020 06:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86802 * 119.99670 * 2 1 4 4 H 1.48500 * 109.47190 * 239.99647 * 3 2 1 5 5 H 1.48498 * 109.47358 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47042 * 119.99591 * 3 2 1 7 7 C 1.38792 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99990 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00175 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99992 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46825 * 180.02562 * 10 9 7 12 12 O 1.20824 * 120.00486 * 359.97438 * 11 10 9 13 13 O 1.34241 * 119.99795 * 180.02562 * 11 10 9 14 14 C 1.35979 * 117.00237 * 185.77465 * 13 11 10 15 15 C 1.38754 * 120.14503 * 68.97977 * 14 13 11 16 16 C 1.37890 * 120.31255 * 180.02562 * 15 14 13 17 17 C 1.39375 * 120.20293 * 0.04334 * 16 15 14 18 18 C 1.39198 * 119.00641 * 359.89925 * 17 16 15 19 19 C 1.37412 * 120.80203 * 0.14248 * 18 17 16 20 20 C 1.51146 * 106.19881 * 179.97438 * 18 17 16 21 21 C 1.51383 * 104.20854 * 0.11353 * 20 18 17 22 22 O 1.21299 * 126.43271 * 179.97438 * 21 20 18 23 23 N 1.34353 * 107.13461 * 359.92878 * 21 20 18 24 24 H 0.96998 * 120.00462 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.46921 * 59.99919 * 10 9 7 26 26 H 1.08996 * 109.47162 * 299.99837 * 10 9 7 27 27 H 1.07992 * 119.84348 * 0.03018 * 15 14 13 28 28 H 1.07995 * 119.89945 * 180.02562 * 16 15 14 29 29 H 1.08007 * 119.97194 * 179.97438 * 19 18 17 30 30 H 1.08998 * 110.50734 * 241.38976 * 20 18 17 31 31 H 1.09000 * 110.50221 * 118.82944 * 20 18 17 32 32 H 0.96998 * 123.89316 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0001 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9876 -5.3026 -0.0012 12 8 0.7958 -5.5015 -0.0011 13 8 2.8410 -6.3388 -0.0008 14 6 2.3030 -7.5817 -0.1233 15 6 1.7213 -7.9743 -1.3202 16 6 1.1744 -9.2336 -1.4481 17 6 1.2011 -10.1220 -0.3745 18 6 1.7882 -9.7182 0.8213 19 6 2.3326 -8.4630 0.9492 20 6 1.6578 -10.8869 1.7708 21 6 0.9470 -11.9482 0.9584 22 8 0.6383 -13.0586 1.3367 23 7 0.7213 -11.4289 -0.2601 24 1 -0.4851 0.8400 -0.0004 25 1 3.1246 -3.7312 0.8894 26 1 3.1246 -3.7312 -0.8905 27 1 1.6969 -7.2904 -2.1557 28 1 0.7237 -9.5324 -2.3829 29 1 2.7845 -8.1635 1.8834 30 1 1.0618 -10.6082 2.6398 31 1 2.6419 -11.2386 2.0807 32 1 0.2762 -11.9064 -0.9775 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797351718.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:52 Heat of formation + Delta-G solvation = -73.845272 kcal Electronic energy + Delta-G solvation = -19478.778871 eV Core-core repulsion = 16110.362848 eV Total energy + Delta-G solvation = -3368.416023 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.83800 -40.83873 -38.50233 -36.90375 -35.26757 -32.69333 -32.54024 -30.34868 -29.12188 -28.10482 -25.62386 -23.45394 -22.68989 -21.52851 -20.79756 -18.31911 -18.16177 -17.83252 -17.05092 -16.48578 -16.32844 -16.12396 -14.91127 -14.89310 -14.62278 -14.41227 -14.20328 -13.66245 -13.50932 -13.44388 -13.02671 -12.73592 -12.67680 -12.60799 -11.76249 -11.18423 -11.10604 -11.10107 -10.87169 -10.76907 -10.54636 -10.22709 -9.98031 -9.25197 -9.15975 -8.45458 -8.22592 -6.67900 -6.32604 -4.06466 0.66217 0.96248 2.01457 2.44047 2.55438 2.63618 3.17539 3.18497 3.23671 3.34399 3.52784 3.80111 4.03003 4.10039 4.42776 4.73119 4.82164 4.98874 5.01094 5.02937 5.03586 5.29461 5.48043 5.54310 5.66041 5.70138 5.81937 5.97341 6.08716 6.12177 6.38103 6.45223 6.77131 7.49893 7.57446 8.05928 8.24645 9.12853 10.74780 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.051845 B = 0.002655 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.942291 B =10542.017299 C =10577.526609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.922 3.078 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.538 4.538 8 H 0.077 0.923 9 S -0.056 6.056 10 C -0.127 4.127 11 C 0.475 3.525 12 O -0.467 6.467 13 O -0.295 6.295 14 C 0.078 3.922 15 C -0.088 4.088 16 C -0.118 4.118 17 C 0.134 3.866 18 C -0.129 4.129 19 C -0.066 4.066 20 C -0.113 4.113 21 C 0.530 3.470 22 O -0.507 6.507 23 N -0.658 5.658 24 H 0.271 0.729 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.139 0.861 28 H 0.135 0.865 29 H 0.140 0.860 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.766 -18.727 -0.908 19.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.748 3.252 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.686 4.686 8 H 0.095 0.905 9 S 0.171 5.829 10 C -0.275 4.275 11 C 0.317 3.683 12 O -0.349 6.349 13 O -0.211 6.211 14 C 0.035 3.965 15 C -0.107 4.107 16 C -0.139 4.139 17 C 0.037 3.963 18 C -0.132 4.132 19 C -0.085 4.085 20 C -0.152 4.152 21 C 0.318 3.682 22 O -0.382 6.382 23 N -0.301 5.301 24 H 0.081 0.919 25 H 0.125 0.875 26 H 0.125 0.875 27 H 0.157 0.843 28 H 0.152 0.848 29 H 0.158 0.842 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 3.942 -19.524 -0.552 19.926 hybrid contribution 1.596 1.100 -0.499 2.002 sum 5.538 -18.424 -1.051 19.267 Atomic orbital electron populations 1.69993 1.06002 1.27858 1.46344 1.25005 0.95073 0.99145 0.94240 0.86166 0.79206 0.80877 0.78945 1.19807 1.20765 1.19795 1.22791 0.95014 0.91049 1.59734 0.90524 1.85463 1.03972 0.96579 1.96929 1.23334 1.07300 0.90027 1.06839 1.23812 0.85316 0.86696 0.72502 1.90710 1.16544 1.84944 1.42715 1.84701 1.39880 1.12682 1.83881 1.18303 1.00210 0.84453 0.93514 1.21106 0.96120 0.95983 0.97475 1.20171 1.03414 0.92557 0.97725 1.18232 0.97242 0.84985 0.95829 1.19504 1.03405 0.95398 0.94906 1.20059 0.98595 0.91619 0.98183 1.21048 1.03746 0.91573 0.98807 1.20593 0.78129 0.87413 0.82024 1.90830 1.53159 1.20040 1.74136 1.43746 1.57184 1.13365 1.15799 0.91940 0.87547 0.87546 0.84315 0.84751 0.84195 0.85545 0.85627 0.74792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.15 13.22 55.49 0.73 -24.42 16 2 C 0.08 2.05 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 20.59 29.55 -169.99 -5.02 15.56 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.54 -14.56 9.50 30.94 0.29 -14.27 16 8 H 0.08 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.42 20.58 -107.50 -2.21 -3.63 16 10 C -0.13 -2.41 6.27 36.01 0.23 -2.18 16 11 C 0.48 8.46 7.75 36.01 0.28 8.74 16 12 O -0.47 -9.64 15.28 -18.75 -0.29 -9.93 16 13 O -0.29 -4.39 10.05 -23.73 -0.24 -4.63 16 14 C 0.08 1.02 5.28 -39.17 -0.21 0.82 16 15 C -0.09 -1.03 9.31 -39.52 -0.37 -1.40 16 16 C -0.12 -1.12 10.07 -39.29 -0.40 -1.52 16 17 C 0.13 1.28 7.12 -83.50 -0.59 0.68 16 18 C -0.13 -1.25 6.36 -104.35 -0.66 -1.91 16 19 C -0.07 -0.72 9.96 -39.66 -0.40 -1.11 16 20 C -0.11 -0.87 6.87 -28.48 -0.20 -1.06 16 21 C 0.53 5.24 8.71 -10.84 -0.09 5.14 16 22 O -0.51 -6.65 18.03 5.54 0.10 -6.55 16 23 N -0.66 -5.54 5.89 -9.59 -0.06 -5.60 16 24 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.11 1.85 8.14 -51.92 -0.42 1.42 16 26 H 0.11 1.83 8.14 -51.92 -0.42 1.41 16 27 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 28 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 29 H 0.14 1.29 8.06 -52.48 -0.42 0.86 16 30 H 0.13 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.41 2.60 8.96 -40.82 -0.37 2.23 16 LS Contribution 308.41 15.07 4.65 4.65 Total: -1.00 -33.36 308.41 -7.42 -40.77 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -2.87 Total: -0.12 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -2.21 Total: -6.11 kcal Atomic # 7 Polarization: -30.69 SS G_CDS: 0.68 Total: -30.02 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.42 Total: -21.11 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: -1.42 SS G_CDS: -2.21 Total: -3.63 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.36 -7.42 -40.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797351718.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.072 kcal (2) G-P(sol) polarization free energy of solvation -33.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds