Wall clock time and date at job start Tue Mar 31 2020 06:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86802 * 119.99670 * 2 1 4 4 H 1.48500 * 109.47190 * 239.99647 * 3 2 1 5 5 H 1.48498 * 109.47358 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47042 * 119.99591 * 3 2 1 7 7 C 1.38792 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99990 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00175 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99992 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46825 * 180.02562 * 10 9 7 12 12 O 1.20824 * 120.00486 * 359.97438 * 11 10 9 13 13 O 1.34241 * 119.99795 * 180.02562 * 11 10 9 14 14 C 1.35979 * 117.00237 * 185.77465 * 13 11 10 15 15 C 1.38754 * 120.14503 * 68.97977 * 14 13 11 16 16 C 1.37890 * 120.31255 * 180.02562 * 15 14 13 17 17 C 1.39375 * 120.20293 * 0.04334 * 16 15 14 18 18 C 1.39198 * 119.00641 * 359.89925 * 17 16 15 19 19 C 1.37412 * 120.80203 * 0.14248 * 18 17 16 20 20 C 1.51146 * 106.19881 * 179.97438 * 18 17 16 21 21 C 1.51383 * 104.20854 * 0.11353 * 20 18 17 22 22 O 1.21299 * 126.43271 * 179.97438 * 21 20 18 23 23 N 1.34353 * 107.13461 * 359.92878 * 21 20 18 24 24 H 0.96998 * 120.00462 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.46921 * 59.99919 * 10 9 7 26 26 H 1.08996 * 109.47162 * 299.99837 * 10 9 7 27 27 H 1.07992 * 119.84348 * 0.03018 * 15 14 13 28 28 H 1.07995 * 119.89945 * 180.02562 * 16 15 14 29 29 H 1.08007 * 119.97194 * 179.97438 * 19 18 17 30 30 H 1.08998 * 110.50734 * 241.38976 * 20 18 17 31 31 H 1.09000 * 110.50221 * 118.82944 * 20 18 17 32 32 H 0.96998 * 123.89316 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0001 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9876 -5.3026 -0.0012 12 8 0.7958 -5.5015 -0.0011 13 8 2.8410 -6.3388 -0.0008 14 6 2.3030 -7.5817 -0.1233 15 6 1.7213 -7.9743 -1.3202 16 6 1.1744 -9.2336 -1.4481 17 6 1.2011 -10.1220 -0.3745 18 6 1.7882 -9.7182 0.8213 19 6 2.3326 -8.4630 0.9492 20 6 1.6578 -10.8869 1.7708 21 6 0.9470 -11.9482 0.9584 22 8 0.6383 -13.0586 1.3367 23 7 0.7213 -11.4289 -0.2601 24 1 -0.4851 0.8400 -0.0004 25 1 3.1246 -3.7312 0.8894 26 1 3.1246 -3.7312 -0.8905 27 1 1.6969 -7.2904 -2.1557 28 1 0.7237 -9.5324 -2.3829 29 1 2.7845 -8.1635 1.8834 30 1 1.0618 -10.6082 2.6398 31 1 2.6419 -11.2386 2.0807 32 1 0.2762 -11.9064 -0.9775 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797351718.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:52 Heat of formation + Delta-G solvation = -95.017923 kcal Electronic energy + Delta-G solvation = -19479.696986 eV Core-core repulsion = 16110.362848 eV Total energy + Delta-G solvation = -3369.334138 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.71625 -41.97026 -39.45784 -38.13055 -36.19484 -34.59443 -33.44626 -31.69985 -30.07063 -28.95750 -27.68899 -24.52671 -23.53637 -22.28008 -21.90650 -19.94094 -19.18059 -19.09967 -17.98512 -17.80627 -17.29763 -17.08196 -16.87602 -16.25283 -15.86994 -15.36890 -15.24642 -14.80522 -14.63985 -14.29917 -14.24588 -13.97936 -13.83373 -13.47655 -13.17840 -12.92734 -12.84942 -12.67040 -12.03925 -11.79714 -11.74839 -11.59834 -11.38587 -11.12900 -10.37017 -10.04337 -9.08797 -8.71983 -8.35950 -6.15469 -0.24407 0.16246 0.99572 1.04352 1.31412 1.44829 1.46386 1.55831 1.86206 1.93330 2.25258 2.61321 2.99412 3.00356 3.25050 3.33416 3.64369 3.81197 4.00791 4.16744 4.18436 4.27802 4.45544 4.46212 4.64497 4.75385 4.88699 4.98493 5.19707 5.22296 5.43087 5.48072 5.67114 5.81177 6.19639 6.74677 6.84593 7.06172 8.72822 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.051845 B = 0.002655 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.942291 B =10542.017299 C =10577.526609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.016 3.984 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.088 0.912 9 S -0.135 6.135 10 C -0.107 4.107 11 C 0.485 3.515 12 O -0.501 6.501 13 O -0.283 6.283 14 C 0.039 3.961 15 C -0.099 4.099 16 C -0.113 4.113 17 C 0.136 3.864 18 C -0.129 4.129 19 C -0.065 4.065 20 C -0.106 4.106 21 C 0.529 3.471 22 O -0.542 6.542 23 N -0.648 5.648 24 H 0.272 0.728 25 H 0.126 0.874 26 H 0.127 0.873 27 H 0.137 0.863 28 H 0.161 0.839 29 H 0.156 0.844 30 H 0.143 0.857 31 H 0.151 0.849 32 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.388 -19.372 -0.766 20.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.189 4.189 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.695 4.695 8 H 0.106 0.894 9 S 0.092 5.908 10 C -0.255 4.255 11 C 0.328 3.672 12 O -0.386 6.386 13 O -0.198 6.198 14 C -0.003 4.003 15 C -0.118 4.118 16 C -0.134 4.134 17 C 0.039 3.961 18 C -0.132 4.132 19 C -0.084 4.084 20 C -0.144 4.144 21 C 0.318 3.682 22 O -0.420 6.420 23 N -0.291 5.291 24 H 0.081 0.919 25 H 0.144 0.856 26 H 0.145 0.855 27 H 0.155 0.845 28 H 0.179 0.821 29 H 0.173 0.827 30 H 0.161 0.839 31 H 0.169 0.831 32 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 5.589 -20.189 -0.430 20.952 hybrid contribution 1.110 1.085 -0.569 1.653 sum 6.699 -19.103 -0.998 20.268 Atomic orbital electron populations 1.70152 1.07920 1.28834 1.47749 1.26096 0.95946 1.03248 0.93596 0.85006 0.77799 0.75670 0.79571 1.18621 1.20571 1.18630 1.23167 0.95588 0.91519 1.59252 0.89403 1.85564 1.09030 0.99022 1.97194 1.23112 1.04429 0.89177 1.08783 1.23483 0.84915 0.87079 0.71731 1.90697 1.17975 1.85499 1.44457 1.84671 1.38803 1.13034 1.83294 1.18660 1.02780 0.83769 0.95073 1.21223 0.96454 0.96963 0.97180 1.20382 1.02528 0.91614 0.98863 1.18356 0.96676 0.85211 0.95899 1.19683 1.02565 0.95392 0.95524 1.20187 0.98358 0.91671 0.98179 1.21130 1.05076 0.89797 0.98438 1.20892 0.77674 0.87205 0.82387 1.90821 1.54761 1.21597 1.74805 1.43712 1.56556 1.12891 1.15972 0.91886 0.85553 0.85492 0.84474 0.82108 0.82653 0.83901 0.83118 0.73623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.77 13.22 21.65 0.29 -53.49 16 2 C 0.02 0.89 5.49 84.86 0.47 1.36 16 3 Si 1.00 41.81 29.55 68.60 2.03 43.84 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 5 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 6 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 7 C -0.55 -29.64 9.50 67.95 0.65 -28.99 16 8 H 0.09 4.38 7.80 -2.91 -0.02 4.35 16 9 S -0.14 -7.01 20.58 -56.49 -1.16 -8.17 16 10 C -0.11 -3.96 6.27 71.24 0.45 -3.51 16 11 C 0.48 17.09 7.75 71.24 0.55 17.64 16 12 O -0.50 -20.94 15.28 21.97 0.34 -20.61 16 13 O -0.28 -8.13 10.05 4.15 0.04 -8.09 16 14 C 0.04 1.00 5.28 22.54 0.12 1.11 16 15 C -0.10 -2.23 9.31 22.31 0.21 -2.03 16 16 C -0.11 -1.95 10.07 22.46 0.23 -1.73 16 17 C 0.14 2.30 7.12 38.39 0.27 2.57 16 18 C -0.13 -2.19 6.36 -19.69 -0.13 -2.31 16 19 C -0.07 -1.31 9.96 22.22 0.22 -1.09 16 20 C -0.11 -1.33 6.87 29.46 0.20 -1.13 16 21 C 0.53 9.40 8.71 87.94 0.77 10.16 16 22 O -0.54 -13.55 18.03 -3.09 -0.06 -13.61 16 23 N -0.65 -9.55 5.89 -302.88 -1.78 -11.33 16 24 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 25 H 0.13 4.19 8.14 -2.40 -0.02 4.18 16 26 H 0.13 4.20 8.14 -2.40 -0.02 4.18 16 27 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 28 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 29 H 0.16 2.53 8.06 -2.91 -0.02 2.50 16 30 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.15 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.42 4.48 8.96 -92.71 -0.83 3.64 16 Total: -1.00 -73.19 308.41 4.04 -69.15 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 0.35 Total: 10.26 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: 4.00 Total: -7.95 kcal Atomic # 7 Polarization: -63.32 SS G_CDS: -1.50 Total: -64.82 kcal Atomic # 8 Polarization: -42.63 SS G_CDS: 0.32 Total: -42.31 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 16 Polarization: -7.01 SS G_CDS: -1.16 Total: -8.17 kcal Total: -73.19 4.04 -69.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797351718.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.869 kcal (2) G-P(sol) polarization free energy of solvation -73.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds