Wall clock time and date at job start Tue Mar 31 2020 06:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39818 * 120.06040 * 103.47148 * 3 2 1 5 5 C 1.37955 * 120.17695 * 180.02562 * 4 3 2 6 6 C 1.38284 * 120.29538 * 0.02562 * 5 4 3 7 7 Cl 1.73599 * 119.94486 * 179.97438 * 6 5 4 8 8 C 1.39873 * 120.11390 * 359.97438 * 6 5 4 9 9 C 1.47676 * 120.08784 * 180.02562 * 8 6 5 10 10 O 1.21480 * 119.99674 * 359.72870 * 9 8 6 11 11 O 1.34705 * 119.99952 * 179.97438 * 9 8 6 12 12 C 1.45208 * 117.00046 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47054 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.46804 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47028 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99899 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99994 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99772 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00072 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47207 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47080 * 120.00150 * 19 17 15 22 22 H 1.48500 * 109.47409 * 239.99964 * 19 17 15 23 23 C 1.39334 * 120.05835 * 283.76179 * 3 2 1 24 24 H 1.08004 * 119.91119 * 359.97438 * 4 3 2 25 25 H 1.08000 * 119.84861 * 179.97438 * 5 4 3 26 26 H 1.09003 * 109.46707 * 300.00012 * 12 11 9 27 27 H 1.08998 * 109.47162 * 60.00246 * 12 11 9 28 28 H 1.08994 * 109.47273 * 299.99730 * 13 12 11 29 29 H 1.08995 * 109.47465 * 60.00397 * 13 12 11 30 30 H 1.09003 * 109.46727 * 299.99560 * 14 13 12 31 31 H 1.08998 * 109.47391 * 59.99947 * 14 13 12 32 32 H 0.97003 * 120.00039 * 179.97438 * 18 17 15 33 33 H 1.07995 * 120.14823 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2683 0.2829 -1.1768 5 6 4.6478 0.2836 -1.1797 6 6 5.3479 0.0051 -0.0202 7 17 7.0839 0.0078 -0.0342 8 6 4.6598 -0.2789 1.1640 9 6 5.4081 -0.5758 2.4021 10 8 6.6229 -0.5783 2.3917 11 8 4.7436 -0.8485 3.5417 12 6 5.5439 -1.1305 4.7201 13 6 4.6213 -1.4152 5.9069 14 6 5.4646 -1.7117 7.1487 15 6 4.5558 -1.9928 8.3176 16 1 3.4841 -1.9626 8.1878 17 6 5.0927 -2.2886 9.5526 18 7 6.3978 -2.3259 9.7104 19 14 3.9664 -2.6363 11.0016 20 1 2.5510 -2.5327 10.5645 21 1 4.2269 -4.0057 11.5136 22 1 4.2259 -1.6475 12.0788 23 6 3.2660 -0.2859 1.1713 24 1 2.7277 0.5001 -2.0863 25 1 5.1833 0.5019 -2.0918 26 1 6.1729 -2.0007 4.5323 27 1 6.1728 -0.2696 4.9467 28 1 3.9920 -0.5454 6.0947 29 1 3.9927 -2.2763 5.6801 30 1 6.0942 -2.5815 6.9610 31 1 6.0929 -0.8504 7.3754 32 1 6.7756 -2.5336 10.5794 33 1 2.7295 -0.5087 2.0817 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000803834238.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:22 Heat of formation + Delta-G solvation = -43.545428 kcal Electronic energy + Delta-G solvation = -19276.450189 eV Core-core repulsion = 15907.304359 eV Total energy + Delta-G solvation = -3369.145830 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.76434 -39.43371 -37.25428 -36.50403 -36.41948 -34.04264 -32.35622 -31.74150 -31.56440 -27.25631 -25.04214 -24.25622 -23.24304 -21.58659 -20.42651 -19.14284 -17.60502 -17.29508 -16.51991 -16.42373 -16.16941 -15.80367 -14.74157 -14.71273 -14.48105 -14.09195 -13.89545 -13.43324 -13.37014 -13.35942 -12.64173 -12.24754 -12.17166 -12.15794 -11.92138 -11.76690 -11.63039 -11.00697 -10.68703 -10.61175 -10.44810 -10.13291 -9.83381 -9.74626 -9.53912 -9.33969 -9.17349 -8.40962 -6.05556 -4.08583 -0.13816 0.30363 1.62356 1.98259 2.20000 2.61054 2.71073 3.27966 3.29032 3.29669 3.36718 3.40873 4.05469 4.17694 4.41657 4.51579 4.54212 4.81304 5.16498 5.18936 5.30706 5.41018 5.51204 5.53291 5.56147 5.84856 5.96464 6.37027 6.49731 6.75770 6.93970 7.02143 7.57916 7.68356 7.75145 7.92751 8.33484 8.97913 9.56012 11.05878 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.018272 B = 0.003063 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.000790 B = 9139.757451 C =10646.007710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C 0.253 3.747 3 C -0.036 4.036 4 C -0.029 4.029 5 C -0.124 4.124 6 C 0.039 3.961 7 Cl -0.014 7.014 8 C -0.112 4.112 9 C 0.497 3.503 10 O -0.481 6.481 11 O -0.353 6.353 12 C 0.071 3.929 13 C -0.110 4.110 14 C 0.024 3.976 15 C -0.521 4.521 16 H 0.058 0.942 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.894 3.106 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.002 4.002 24 H 0.149 0.851 25 H 0.154 0.846 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.261 0.739 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.674 6.012 -25.083 25.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.077 5.077 2 C -0.063 4.063 3 C -0.040 4.040 4 C -0.050 4.050 5 C -0.142 4.142 6 C 0.011 3.989 7 Cl 0.015 6.985 8 C -0.114 4.114 9 C 0.340 3.660 10 O -0.369 6.369 11 O -0.270 6.270 12 C -0.002 4.002 13 C -0.147 4.147 14 C -0.013 4.013 15 C -0.560 4.560 16 H 0.076 0.924 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.722 3.278 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.022 4.022 24 H 0.167 0.833 25 H 0.172 0.828 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.765 5.963 -24.894 25.874 hybrid contribution 0.233 -0.227 0.953 1.007 sum -3.532 5.736 -23.941 24.871 Atomic orbital electron populations 1.81311 1.11798 1.07988 1.06581 1.25393 0.92277 0.94213 0.94420 1.15917 0.84995 1.07848 0.95227 1.21379 0.93433 0.93076 0.97095 1.20986 0.93561 1.02185 0.97499 1.21370 0.87545 0.96474 0.93503 1.98467 1.05882 1.95614 1.98499 1.18924 0.92993 1.07779 0.91750 1.20687 0.86227 0.75056 0.84064 1.90943 1.13990 1.46411 1.85588 1.86514 1.42296 1.79545 1.18623 1.23580 0.94357 1.01247 0.80998 1.21785 0.98598 1.01511 0.92834 1.19057 0.95076 0.97292 0.89900 1.21205 0.93130 1.47670 0.93967 0.92374 1.25027 0.95057 0.95398 0.98981 1.69972 1.10331 1.49054 1.23950 0.86498 0.80956 0.77896 0.82441 1.19663 1.20969 1.20963 1.21596 0.92085 0.90552 0.98005 0.83303 0.82819 0.91192 0.91192 0.92077 0.92071 0.96182 0.96180 0.92927 0.82157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.55 18.54 41.84 0.78 -3.77 16 2 C 0.25 2.19 15.32 -22.47 -0.34 1.85 16 3 C -0.04 -0.25 5.73 -106.97 -0.61 -0.86 16 4 C -0.03 -0.13 9.74 -39.09 -0.38 -0.51 16 5 C -0.12 -0.65 9.80 -39.67 -0.39 -1.04 16 6 C 0.04 0.34 6.36 -38.95 -0.25 0.10 16 7 Cl -0.01 -0.15 25.99 -51.86 -1.35 -1.50 16 8 C -0.11 -1.15 5.87 -105.00 -0.62 -1.76 16 9 C 0.50 6.91 7.89 34.58 0.27 7.18 16 10 O -0.48 -7.75 13.74 -19.25 -0.26 -8.01 16 11 O -0.35 -5.33 9.46 -40.50 -0.38 -5.72 16 12 C 0.07 1.22 5.48 37.16 0.20 1.42 16 13 C -0.11 -2.17 5.53 -26.73 -0.15 -2.32 16 14 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 15 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 16 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 19 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C 0.00 -0.01 9.32 -38.75 -0.36 -0.37 16 24 H 0.15 0.27 8.06 -52.48 -0.42 -0.16 16 25 H 0.15 0.41 8.06 -52.49 -0.42 -0.01 16 26 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.16 1.30 7.60 -52.49 -0.40 0.90 16 LS Contribution 321.06 15.07 4.84 4.84 Total: -1.00 -32.01 321.06 -7.16 -39.17 By element: Atomic # 1 Polarization: -3.12 SS G_CDS: -3.32 Total: -6.44 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -3.17 Total: -9.13 kcal Atomic # 7 Polarization: -31.09 SS G_CDS: 1.51 Total: -29.58 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.65 Total: -13.73 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.35 Total: -1.50 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.01 -7.16 -39.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803834238.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.372 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds