Wall clock time and date at job start Tue Mar 31 2020 06:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39818 * 120.06040 * 103.47148 * 3 2 1 5 5 C 1.37955 * 120.17695 * 180.02562 * 4 3 2 6 6 C 1.38284 * 120.29538 * 0.02562 * 5 4 3 7 7 Cl 1.73599 * 119.94486 * 179.97438 * 6 5 4 8 8 C 1.39873 * 120.11390 * 359.97438 * 6 5 4 9 9 C 1.47676 * 120.08784 * 180.02562 * 8 6 5 10 10 O 1.21480 * 119.99674 * 359.72870 * 9 8 6 11 11 O 1.34705 * 119.99952 * 179.97438 * 9 8 6 12 12 C 1.45208 * 117.00046 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47054 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.46804 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47028 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99899 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99994 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99772 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00072 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47207 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47080 * 120.00150 * 19 17 15 22 22 H 1.48500 * 109.47409 * 239.99964 * 19 17 15 23 23 C 1.39334 * 120.05835 * 283.76179 * 3 2 1 24 24 H 1.08004 * 119.91119 * 359.97438 * 4 3 2 25 25 H 1.08000 * 119.84861 * 179.97438 * 5 4 3 26 26 H 1.09003 * 109.46707 * 300.00012 * 12 11 9 27 27 H 1.08998 * 109.47162 * 60.00246 * 12 11 9 28 28 H 1.08994 * 109.47273 * 299.99730 * 13 12 11 29 29 H 1.08995 * 109.47465 * 60.00397 * 13 12 11 30 30 H 1.09003 * 109.46727 * 299.99560 * 14 13 12 31 31 H 1.08998 * 109.47391 * 59.99947 * 14 13 12 32 32 H 0.97003 * 120.00039 * 179.97438 * 18 17 15 33 33 H 1.07995 * 120.14823 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2683 0.2829 -1.1768 5 6 4.6478 0.2836 -1.1797 6 6 5.3479 0.0051 -0.0202 7 17 7.0839 0.0078 -0.0342 8 6 4.6598 -0.2789 1.1640 9 6 5.4081 -0.5758 2.4021 10 8 6.6229 -0.5783 2.3917 11 8 4.7436 -0.8485 3.5417 12 6 5.5439 -1.1305 4.7201 13 6 4.6213 -1.4152 5.9069 14 6 5.4646 -1.7117 7.1487 15 6 4.5558 -1.9928 8.3176 16 1 3.4841 -1.9626 8.1878 17 6 5.0927 -2.2886 9.5526 18 7 6.3978 -2.3259 9.7104 19 14 3.9664 -2.6363 11.0016 20 1 2.5510 -2.5327 10.5645 21 1 4.2269 -4.0057 11.5136 22 1 4.2259 -1.6475 12.0788 23 6 3.2660 -0.2859 1.1713 24 1 2.7277 0.5001 -2.0863 25 1 5.1833 0.5019 -2.0918 26 1 6.1729 -2.0007 4.5323 27 1 6.1728 -0.2696 4.9467 28 1 3.9920 -0.5454 6.0947 29 1 3.9927 -2.2763 5.6801 30 1 6.0942 -2.5815 6.9610 31 1 6.0929 -0.8504 7.3754 32 1 6.7756 -2.5336 10.5794 33 1 2.7295 -0.5087 2.0817 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000803834238.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:22 Heat of formation + Delta-G solvation = -60.526675 kcal Electronic energy + Delta-G solvation = -19277.186551 eV Core-core repulsion = 15907.304359 eV Total energy + Delta-G solvation = -3369.882192 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.72405 -40.26690 -38.08732 -37.57734 -37.23602 -35.92487 -33.76451 -32.77677 -32.36333 -29.04026 -26.12839 -24.92391 -24.75737 -22.55918 -22.15172 -20.00834 -18.76859 -18.37624 -17.91830 -17.67787 -17.06519 -16.75697 -16.46071 -15.79688 -15.31455 -15.18513 -14.71238 -14.56270 -14.27108 -14.12464 -14.09576 -13.76457 -13.67031 -13.26593 -12.84975 -12.76442 -12.60323 -12.47343 -12.46759 -12.31774 -12.06132 -11.59749 -11.39038 -11.26173 -11.02031 -10.57427 -10.39242 -9.98866 -8.21647 -6.32724 -0.77807 -0.31454 0.94397 1.22906 1.41287 1.41499 1.45433 1.55054 1.59798 1.86041 2.41365 2.63248 2.63731 3.12536 3.38494 3.53471 3.84660 3.94631 4.03692 4.08439 4.17201 4.44171 4.58503 4.67242 4.80673 4.82241 4.90314 5.03066 5.09346 5.34478 5.38706 5.51637 5.65661 5.81382 6.19886 6.35453 6.61473 6.83704 7.36843 8.90696 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.018272 B = 0.003063 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.000790 B = 9139.757451 C =10646.007710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.280 3.720 3 C -0.035 4.035 4 C 0.002 3.998 5 C -0.107 4.107 6 C 0.034 3.966 7 Cl -0.036 7.036 8 C -0.133 4.133 9 C 0.495 3.505 10 O -0.509 6.509 11 O -0.352 6.352 12 C 0.082 3.918 13 C -0.095 4.095 14 C 0.026 3.974 15 C -0.542 4.542 16 H 0.064 0.936 17 C -0.001 4.001 18 N -0.933 5.933 19 Si 0.967 3.033 20 H -0.260 1.260 21 H -0.279 1.279 22 H -0.279 1.279 23 C 0.002 3.998 24 H 0.190 0.810 25 H 0.188 0.812 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.067 0.933 30 H -0.003 1.003 31 H -0.003 1.003 32 H 0.264 0.736 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.306 6.495 -27.091 28.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.035 4.035 3 C -0.039 4.039 4 C -0.018 4.018 5 C -0.126 4.126 6 C 0.005 3.995 7 Cl -0.006 7.006 8 C -0.135 4.135 9 C 0.339 3.661 10 O -0.399 6.399 11 O -0.269 6.269 12 C 0.008 3.992 13 C -0.132 4.132 14 C -0.012 4.012 15 C -0.580 4.580 16 H 0.083 0.917 17 C -0.199 4.199 18 N -0.573 5.573 19 Si 0.791 3.209 20 H -0.184 1.184 21 H -0.204 1.204 22 H -0.204 1.204 23 C -0.019 4.019 24 H 0.207 0.793 25 H 0.206 0.794 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.016 0.984 31 H 0.016 0.984 32 H 0.073 0.927 33 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.414 6.451 -26.924 28.210 hybrid contribution 0.745 -0.348 1.453 1.669 sum -4.669 6.104 -25.471 26.605 Atomic orbital electron populations 1.81351 1.13231 1.09783 1.08110 1.25484 0.92273 0.92751 0.92994 1.15885 0.83944 1.08427 0.95619 1.21817 0.93042 0.89552 0.97391 1.21353 0.93733 1.00256 0.97221 1.21599 0.86599 0.97088 0.94179 1.98463 1.07820 1.95775 1.98535 1.18691 0.93454 1.10906 0.90488 1.21367 0.86310 0.73988 0.84396 1.90930 1.15222 1.47861 1.85875 1.86489 1.41862 1.79940 1.18595 1.23151 0.93619 1.00942 0.81447 1.21462 0.98049 1.01975 0.91735 1.18936 0.94942 0.95322 0.91962 1.21662 0.93814 1.47453 0.95049 0.91731 1.25985 0.96594 0.95106 1.02187 1.70101 1.12307 1.50044 1.24868 0.85367 0.79215 0.77777 0.78503 1.18432 1.20441 1.20428 1.21508 0.91267 0.90388 0.98710 0.79275 0.79449 0.91633 0.91621 0.91437 0.91434 0.98424 0.98414 0.92700 0.82485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.50 18.54 19.00 0.35 -9.14 16 2 C 0.28 4.19 15.32 88.33 1.35 5.55 16 3 C -0.04 -0.37 5.73 -21.39 -0.12 -0.49 16 4 C 0.00 0.01 9.74 22.58 0.22 0.23 16 5 C -0.11 -0.68 9.80 22.21 0.22 -0.46 16 6 C 0.03 0.52 6.36 22.68 0.14 0.66 16 7 Cl -0.04 -0.71 25.99 -2.72 -0.07 -0.78 16 8 C -0.13 -2.58 5.87 -20.11 -0.12 -2.69 16 9 C 0.49 13.83 7.89 70.32 0.55 14.38 16 10 O -0.51 -16.77 13.74 19.90 0.27 -16.49 16 11 O -0.35 -10.70 9.46 -56.14 -0.53 -11.23 16 12 C 0.08 2.89 5.48 71.98 0.39 3.29 16 13 C -0.09 -3.80 5.53 30.59 0.17 -3.63 16 14 C 0.03 1.33 4.97 29.85 0.15 1.47 16 15 C -0.54 -30.42 9.11 25.60 0.23 -30.19 16 16 H 0.06 3.46 7.74 -2.91 -0.02 3.43 16 17 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 18 N -0.93 -56.51 13.29 21.45 0.28 -56.23 16 19 Si 0.97 43.92 29.54 68.60 2.03 45.94 16 20 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 23 C 0.00 0.03 9.32 22.81 0.21 0.25 16 24 H 0.19 -0.55 8.06 -2.91 -0.02 -0.58 16 25 H 0.19 0.01 8.06 -2.91 -0.02 -0.01 16 26 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 32 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 33 H 0.16 2.41 7.60 -2.91 -0.02 2.38 16 Total: -1.00 -71.36 321.06 7.35 -64.01 By element: Atomic # 1 Polarization: -6.00 SS G_CDS: 1.14 Total: -4.85 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: 3.87 Total: -11.22 kcal Atomic # 7 Polarization: -66.01 SS G_CDS: 0.64 Total: -65.37 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.26 Total: -27.73 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.07 Total: -0.78 kcal Total: -71.36 7.35 -64.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803834238.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.486 kcal (2) G-P(sol) polarization free energy of solvation -71.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds