Wall clock time and date at job start Tue Mar 31 2020 07:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47200 * 2 1 4 4 C 1.53001 * 109.46989 * 119.99969 * 2 1 3 5 5 C 1.50694 * 109.47168 * 300.00011 * 4 2 1 6 6 H 1.08000 * 120.00563 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47353 * 269.99586 * 9 7 5 11 11 H 1.48501 * 109.47293 * 30.00037 * 9 7 5 12 12 H 1.48504 * 109.46680 * 149.99835 * 9 7 5 13 13 C 1.53000 * 109.46927 * 240.00054 * 2 1 3 14 14 N 1.46497 * 109.47298 * 60.00396 * 13 2 1 15 15 C 1.34774 * 120.00283 * 180.02562 * 14 13 2 16 16 O 1.21280 * 119.99762 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00337 * 179.97438 * 15 14 13 18 18 H 1.09002 * 115.54601 * 325.66759 * 17 15 14 19 19 C 1.52996 * 117.49966 * 179.97438 * 17 15 14 20 20 C 1.53001 * 117.50146 * 111.37085 * 17 15 14 21 21 Cl 1.80295 * 117.50108 * 214.97921 * 20 17 15 22 22 Cl 1.80298 * 117.49835 * 0.02562 * 20 17 15 23 23 H 1.08998 * 109.46768 * 300.00007 * 1 2 3 24 24 H 1.08995 * 109.47095 * 59.99957 * 1 2 3 25 25 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47384 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47386 * 300.00499 * 3 2 1 28 28 H 1.09007 * 109.47390 * 60.00059 * 3 2 1 29 29 H 1.09007 * 109.46922 * 179.97438 * 4 2 1 30 30 H 1.09003 * 109.46836 * 60.00468 * 4 2 1 31 31 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.46807 * 179.97438 * 13 2 1 33 33 H 1.08992 * 109.47112 * 299.99548 * 13 2 1 34 34 H 0.96997 * 119.99674 * 359.97438 * 14 13 2 35 35 H 1.08999 * 117.50001 * 359.97438 * 19 17 15 36 36 H 1.09002 * 117.49732 * 144.99952 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5376 -0.0109 2.4797 6 1 0.9164 0.8670 2.3807 7 6 1.8712 -0.4817 3.7320 8 7 2.6273 -1.5510 3.8526 9 14 1.2491 0.3994 5.2572 10 1 2.2274 1.4410 5.6608 11 1 -0.0592 1.0369 4.9616 12 1 1.0844 -0.5796 6.3616 13 6 2.0400 -0.7212 -1.2493 14 7 1.5517 -0.0306 -2.4454 15 6 1.8768 -0.4913 -3.6695 16 8 2.5740 -1.4775 -3.7808 17 6 1.3741 0.2188 -4.9000 18 1 0.3817 0.6616 -4.8147 19 6 1.7784 -0.3530 -6.2603 20 6 2.4034 0.9515 -5.7629 21 17 1.8822 2.4818 -6.5611 22 17 4.1250 0.8988 -5.2302 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1300 -0.7216 1.2490 30 1 1.6767 -1.7490 1.2492 31 1 2.8622 -1.8819 4.7337 32 1 3.1300 -0.7208 -1.2495 33 1 1.6767 -1.7489 -1.2492 34 1 0.9938 0.7578 -2.3564 35 1 2.4083 -1.2425 -6.2653 36 1 1.0518 -0.2866 -7.0702 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807722897.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:09 Heat of formation + Delta-G solvation = -41.995329 kcal Electronic energy + Delta-G solvation = -19258.338091 eV Core-core repulsion = 16022.659724 eV Total energy + Delta-G solvation = -3235.678367 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.12711 -37.88520 -36.94378 -36.32118 -35.30883 -33.68956 -32.11080 -27.36214 -26.74347 -26.54600 -24.27472 -22.65906 -22.47740 -20.21455 -18.52616 -17.64900 -16.47134 -16.16245 -15.76193 -15.04032 -14.64628 -14.49330 -13.74902 -13.57919 -13.20485 -13.09560 -12.81089 -12.54979 -12.32943 -12.10817 -12.07412 -11.51556 -11.21952 -11.15511 -11.03931 -10.92558 -10.87170 -10.66567 -10.44504 -10.31702 -10.28161 -9.93104 -9.91396 -9.21399 -8.95660 -8.83479 -8.37802 -6.01913 -4.03321 0.77961 1.78827 2.19898 3.09819 3.22306 3.29757 3.36961 3.38590 3.83521 3.98753 4.43515 4.67936 4.77017 5.12335 5.33658 5.40685 5.47161 5.57885 5.70937 6.12719 6.17761 6.22373 6.34702 6.47563 6.59824 6.69618 7.02206 7.04349 7.08604 7.57899 7.61867 7.73173 7.96541 8.23419 8.38456 9.01412 9.59990 11.09538 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.030867 B = 0.003257 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.908611 B = 8594.608845 C = 8754.606474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.128 4.128 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.274 1.274 12 H -0.287 1.287 13 C 0.128 3.872 14 N -0.710 5.710 15 C 0.535 3.465 16 O -0.527 6.527 17 C -0.159 4.159 18 H 0.145 0.855 19 C -0.111 4.111 20 C 0.016 3.984 21 Cl -0.090 7.090 22 Cl -0.072 7.072 23 H 0.067 0.933 24 H 0.028 0.972 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.029 0.971 28 H 0.067 0.933 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.260 0.740 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.400 0.600 35 H 0.135 0.865 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.709 6.009 -20.691 21.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.199 1.199 12 H -0.213 1.213 13 C 0.006 3.994 14 N -0.360 5.360 15 C 0.319 3.681 16 O -0.403 6.403 17 C -0.182 4.182 18 H 0.163 0.837 19 C -0.149 4.149 20 C -0.036 4.036 21 Cl -0.063 7.063 22 Cl -0.045 7.045 23 H 0.086 0.914 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.086 0.914 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.236 0.764 35 H 0.153 0.847 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.019 5.294 -20.621 21.503 hybrid contribution -0.505 1.052 1.017 1.548 sum -3.524 6.346 -19.604 20.905 Atomic orbital electron populations 1.21767 0.95229 1.01186 1.00286 1.20915 0.95499 0.95914 0.94978 1.21767 1.00621 0.95817 1.00285 1.19087 0.96374 0.95205 0.89433 1.21175 1.31237 1.12097 0.90502 0.92246 1.25013 0.95307 0.95048 0.99093 1.69964 1.36929 1.22995 1.23471 0.86650 0.79193 0.79427 0.83053 1.20759 1.19930 1.21329 1.21695 0.99102 0.96018 0.82589 1.46092 1.52732 1.31668 1.05534 1.19144 0.80832 0.84491 0.83645 1.90731 1.37291 1.25921 1.86383 1.23310 0.99815 1.01767 0.93260 0.83732 1.23923 1.01373 0.94408 0.95210 1.26468 0.85190 0.87942 1.03978 1.98758 1.89819 1.36848 1.80873 1.98793 1.17339 1.97998 1.90336 0.91355 0.95269 0.93318 0.93311 0.95218 0.91383 0.96334 0.96332 0.93018 0.91573 0.91545 0.76433 0.84741 0.85379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 2 C -0.07 -1.33 0.54 -154.51 -0.08 -1.42 16 3 C -0.13 -2.19 8.05 37.15 0.30 -1.89 16 4 C 0.04 0.88 4.04 -27.89 -0.11 0.76 16 5 C -0.51 -13.39 7.65 -34.44 -0.26 -13.66 16 6 H 0.06 1.49 5.68 -52.49 -0.30 1.20 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 9 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.13 2.17 4.56 -4.04 -0.02 2.15 16 14 N -0.71 -9.64 4.96 -60.30 -0.30 -9.93 16 15 C 0.54 7.24 6.70 -10.99 -0.07 7.17 16 16 O -0.53 -8.96 16.09 5.56 0.09 -8.87 16 17 C -0.16 -1.52 6.03 -91.77 -0.55 -2.07 16 18 H 0.14 0.99 8.14 -51.93 -0.42 0.57 16 19 C -0.11 -0.90 9.72 -26.75 -0.26 -1.16 16 20 C 0.02 0.16 3.61 -26.75 -0.10 0.06 16 21 Cl -0.09 -0.81 29.29 -51.86 -1.52 -2.32 16 22 Cl -0.07 -0.88 28.18 -51.86 -1.46 -2.34 16 23 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 24 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 28 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 29 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.40 4.58 6.16 -40.82 -0.25 4.33 16 35 H 0.13 1.23 7.67 -51.93 -0.40 0.83 16 36 H 0.13 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 326.99 15.07 4.93 4.93 Total: -1.00 -30.06 326.99 -8.37 -38.44 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -4.86 Total: 0.01 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -0.96 Total: -10.42 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 0.44 Total: -35.39 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.09 Total: -8.87 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -2.98 Total: -4.67 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.06 -8.37 -38.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807722897.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.559 kcal (2) G-P(sol) polarization free energy of solvation -30.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds